ISNamo22

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1706 bp

Ends


Left end : CCTGTAACAGCGAGAGAGTCCCGCCCTTCCCGTGAGGGACGAGTGTTCCGACGTTCTGTCGGAACCGAGGACTGAACAGGGCGGGCGTGAATCGTGTAAG II struct. : No
Right end : GTACCGTCCACCGTGACGGGAATGTTGCCTCCGGGGGATCTTAGACCGGCTGAGACTCCCACGGAGGAAACCCCGCCGTTCACGGCGGGGAGGATGTCAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGCGGGAGGTCGCCTAGACCAGGCGCACTCAT

DNA sequence

CCTGTAACAGCGAGAGAGTCCCGCCCTTCCCGTGAGGGACGAGTGTTCCGACGTTCTGTCGGAACCGAGGACTGAACAGGGCGGGCGTGAATCGTGTAAG
CTCCCGTGAGAAACTGCCGCATTACTGCTGGTCTTGAGTCTCCAACGTTTCGAGTCCCGTTTCCAACACTTCGATATACGCTTCATCGAGCGACAAATCG
TTTGCTTCGGCGTAGTCTTTCACCCGTCCGTGTAGCCCATACGAAATATCTATTGCAGGTCGCATTGTTACACAAGACTTATTTGACACTGCGACGTGAA
AACGATTGTGGTATGAAGCGAACCAACACGTTCGCCGTGCGACCGCTTTCCGACACCGGAAAGCAACTGCTACGCGACCTGTTGGACGCTTCCGCCGCGC
TCTGGAACGAAGTCAACTACCAGCGCCTCATGCGGTACAACGACGAGGGCGGCTTCGAGGGCGACGTGTGGGACGCCGATACTGGCCGTCTCGAAGGCCA
GTACAAAGGTGTTCTCGGCGCGTCTACCGCCCAACAGGTGATACGCAAAAACAGCGAAGCGTGGCGCGGGTTCTTCGATACGAAGAACAAGTACCACGAC
GAGTCGAATACGTCAGTCACGGAACACCCGGAACCACCGGGCTTCCGTGGCAACGAGGACGATGGACGTATTCTCAAGACCGTCATTCGCAACACATCGT
ACACCGTCGAATGGGGCGAGCGGTCCCGGCTTGAGATACTGGTCGGGAGCGATTTGAAAGACCGATACGACCACACCGGGCGTCTCCGGCTTGAAATCGC
TGGCGACCCGAATTGGCCCGACTACGAGAAACAGGGCCGGTTGGACCTGTGGTACGACGAGACTGATAACACCTTCAGAGCCTCGCAACCCGTGACTGTT
TCTGACGAGACACGGGACACTCCACTGGCCTCAGAGAAGGCCGCTCTGGATATTGGTGCGAACAGTCTTGTCGCCTGTACCACCACAACCGGCGAGCAAT
ACCTGTACGAAGGCCGCGAGTTGTTCCAGCGATTCCGCGAGACGACACGAGAAATCGCCCGATTACAGTCGAAGCTCGAAGAAGGACGATACAGTAGCGA
GCGTATCGAACGCCTGTATCGGAAGCGAACCCGTCGCCGCGACCATGCTCAAGAAGCACTATGTCGTGACCTGCTGGAACGACTACATTCCGAAGGCGTG
GACACGGTGTATATCGGTGGCCTGACCGACGTGTTGGAAACCCACTGGTCAGTCAAAACCAATGCCAAGACGCACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCATGTACCGCCGAGGAATACGGTATCTCGGTGGAAGTCCGGTCGGAAGCATGGACCAGTCAAGAGTGCCCGCAATGTGGTTCGACAGA
CCGAACGACACGGCACCAAGACACACTCACCTGTCCGTGTGGGTTCGAGGGGCACGCCGACCTGACAGCCTCAGAAACGTTCCTAGAGCGGCACACAGAG
AAGGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACACTCTCACCGTCCCAAAGAACAGCGCACAG
ACCCGAGTACCGTCCACCGTGACGGGAATGTTGCCTCCGGGGGATCTTAGACCGGCTGAGACTCCCACGGAGGAAACCCCGCCGTTCACGGCGGGGAGGA
TGTCAT
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
144 bp47 aa265122-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRPAIDISYGLHGRVKDYAEANDLSLDEAYIEVLETGLETLETQDQQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1338 bp445 aa3131650+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRTNTFAVRPLSDTGKQLLRDLLDASAALWNEVNYQRLMRYNDEGGFEGDVWDADTGRLEGQYKGVLGASTAQQVIRKNSEAWRGFFDTKNKYHDESNT
SVTEHPEPPGFRGNEDDGRILKTVIRNTSYTVEWGERSRLEILVGSDLKDRYDHTGRLRLEIAGDPNWPDYEKQGRLDLWYDETDNTFRASQPVTVSDET
RDTPLASEKAALDIGANSLVACTTTTGEQYLYEGRELFQRFRETTREIARLQSKLEEGRYSSERIERLYRKRTRRRDHAQEALCRDLLERLHSEGVDTVY
IGGLTDVLETHWSVKTNAKTHNFWAFKQFTERLACTAEEYGISVEVRSEAWTSQECPQCGSTDRTTRHQDTLTCPCGFEGHADLTASETFLERHTEKAVR
PMARPVRFEWDDHEWSESPHSHRPKEQRTDPSTVHRDGNVASGGS

 

Blast result :
Comments
ISNamo22 is 75% (TnpB) aa similar to ISHhu1. The first ORF is a passenger gene annotated as uncharacterized protein.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513