ISNamo22
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1706 bp
Ends
Left end : CCTGTAACAGCGAGAGAGTCCCGCCCTTCCCGTGAGGGACGAGTGTTCCGACGTTCTGTCGGAACCGAGGACTGAACAGGGCGGGCGTGAATCGTGTAAG II struct. : No
Right end : GTACCGTCCACCGTGACGGGAATGTTGCCTCCGGGGGATCTTAGACCGGCTGAGACTCCCACGGAGGAAACCCCGCCGTTCACGGCGGGGAGGATGTCAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCGGGAGGTCG | CCTA | GACCAGGCGCAC | TCAT |
DNA sequence
CCTGTAACAGCGAGAGAGTCCCGCCCTTCCCGTGAGGGACGAGTGTTCCGACGTTCTGTCGGAACCGAGGACTGAACAGGGCGGGCGTGAATCGTGTAAG
CTCCCGTGAGAAACTGCCGCATTACTGCTGGTCTTGAGTCTCCAACGTTTCGAGTCCCGTTTCCAACACTTCGATATACGCTTCATCGAGCGACAAATCG
TTTGCTTCGGCGTAGTCTTTCACCCGTCCGTGTAGCCCATACGAAATATCTATTGCAGGTCGCATTGTTACACAAGACTTATTTGACACTGCGACGTGAA
AACGATTGTGGTATGAAGCGAACCAACACGTTCGCCGTGCGACCGCTTTCCGACACCGGAAAGCAACTGCTACGCGACCTGTTGGACGCTTCCGCCGCGC
TCTGGAACGAAGTCAACTACCAGCGCCTCATGCGGTACAACGACGAGGGCGGCTTCGAGGGCGACGTGTGGGACGCCGATACTGGCCGTCTCGAAGGCCA
GTACAAAGGTGTTCTCGGCGCGTCTACCGCCCAACAGGTGATACGCAAAAACAGCGAAGCGTGGCGCGGGTTCTTCGATACGAAGAACAAGTACCACGAC
GAGTCGAATACGTCAGTCACGGAACACCCGGAACCACCGGGCTTCCGTGGCAACGAGGACGATGGACGTATTCTCAAGACCGTCATTCGCAACACATCGT
ACACCGTCGAATGGGGCGAGCGGTCCCGGCTTGAGATACTGGTCGGGAGCGATTTGAAAGACCGATACGACCACACCGGGCGTCTCCGGCTTGAAATCGC
TGGCGACCCGAATTGGCCCGACTACGAGAAACAGGGCCGGTTGGACCTGTGGTACGACGAGACTGATAACACCTTCAGAGCCTCGCAACCCGTGACTGTT
TCTGACGAGACACGGGACACTCCACTGGCCTCAGAGAAGGCCGCTCTGGATATTGGTGCGAACAGTCTTGTCGCCTGTACCACCACAACCGGCGAGCAAT
ACCTGTACGAAGGCCGCGAGTTGTTCCAGCGATTCCGCGAGACGACACGAGAAATCGCCCGATTACAGTCGAAGCTCGAAGAAGGACGATACAGTAGCGA
GCGTATCGAACGCCTGTATCGGAAGCGAACCCGTCGCCGCGACCATGCTCAAGAAGCACTATGTCGTGACCTGCTGGAACGACTACATTCCGAAGGCGTG
GACACGGTGTATATCGGTGGCCTGACCGACGTGTTGGAAACCCACTGGTCAGTCAAAACCAATGCCAAGACGCACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCATGTACCGCCGAGGAATACGGTATCTCGGTGGAAGTCCGGTCGGAAGCATGGACCAGTCAAGAGTGCCCGCAATGTGGTTCGACAGA
CCGAACGACACGGCACCAAGACACACTCACCTGTCCGTGTGGGTTCGAGGGGCACGCCGACCTGACAGCCTCAGAAACGTTCCTAGAGCGGCACACAGAG
AAGGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACACTCTCACCGTCCCAAAGAACAGCGCACAG
ACCCGAGTACCGTCCACCGTGACGGGAATGTTGCCTCCGGGGGATCTTAGACCGGCTGAGACTCCCACGGAGGAAACCCCGCCGTTCACGGCGGGGAGGA
TGTCAT
CTCCCGTGAGAAACTGCCGCATTACTGCTGGTCTTGAGTCTCCAACGTTTCGAGTCCCGTTTCCAACACTTCGATATACGCTTCATCGAGCGACAAATCG
TTTGCTTCGGCGTAGTCTTTCACCCGTCCGTGTAGCCCATACGAAATATCTATTGCAGGTCGCATTGTTACACAAGACTTATTTGACACTGCGACGTGAA
AACGATTGTGGTATGAAGCGAACCAACACGTTCGCCGTGCGACCGCTTTCCGACACCGGAAAGCAACTGCTACGCGACCTGTTGGACGCTTCCGCCGCGC
TCTGGAACGAAGTCAACTACCAGCGCCTCATGCGGTACAACGACGAGGGCGGCTTCGAGGGCGACGTGTGGGACGCCGATACTGGCCGTCTCGAAGGCCA
GTACAAAGGTGTTCTCGGCGCGTCTACCGCCCAACAGGTGATACGCAAAAACAGCGAAGCGTGGCGCGGGTTCTTCGATACGAAGAACAAGTACCACGAC
GAGTCGAATACGTCAGTCACGGAACACCCGGAACCACCGGGCTTCCGTGGCAACGAGGACGATGGACGTATTCTCAAGACCGTCATTCGCAACACATCGT
ACACCGTCGAATGGGGCGAGCGGTCCCGGCTTGAGATACTGGTCGGGAGCGATTTGAAAGACCGATACGACCACACCGGGCGTCTCCGGCTTGAAATCGC
TGGCGACCCGAATTGGCCCGACTACGAGAAACAGGGCCGGTTGGACCTGTGGTACGACGAGACTGATAACACCTTCAGAGCCTCGCAACCCGTGACTGTT
TCTGACGAGACACGGGACACTCCACTGGCCTCAGAGAAGGCCGCTCTGGATATTGGTGCGAACAGTCTTGTCGCCTGTACCACCACAACCGGCGAGCAAT
ACCTGTACGAAGGCCGCGAGTTGTTCCAGCGATTCCGCGAGACGACACGAGAAATCGCCCGATTACAGTCGAAGCTCGAAGAAGGACGATACAGTAGCGA
GCGTATCGAACGCCTGTATCGGAAGCGAACCCGTCGCCGCGACCATGCTCAAGAAGCACTATGTCGTGACCTGCTGGAACGACTACATTCCGAAGGCGTG
GACACGGTGTATATCGGTGGCCTGACCGACGTGTTGGAAACCCACTGGTCAGTCAAAACCAATGCCAAGACGCACAACTTCTGGGCGTTCAAGCAATTCA
CCGAGCGACTGGCATGTACCGCCGAGGAATACGGTATCTCGGTGGAAGTCCGGTCGGAAGCATGGACCAGTCAAGAGTGCCCGCAATGTGGTTCGACAGA
CCGAACGACACGGCACCAAGACACACTCACCTGTCCGTGTGGGTTCGAGGGGCACGCCGACCTGACAGCCTCAGAAACGTTCCTAGAGCGGCACACAGAG
AAGGCAGTCAGGCCGATGGCACGGCCCGTGCGGTTCGAGTGGGACGACCACGAATGGTCGGAGTCACCACACTCTCACCGTCCCAAAGAACAGCGCACAG
ACCCGAGTACCGTCCACCGTGACGGGAATGTTGCCTCCGGGGGATCTTAGACCGGCTGAGACTCCCACGGAGGAAACCCCGCCGTTCACGGCGGGGAGGA
TGTCAT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
144 bp | 47 aa | 265 | 122 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRPAIDISYGLHGRVKDYAEANDLSLDEAYIEVLETGLETLETQDQQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 313 | 1650 | + | No |
AG : TnpB
ORF sequence :
MKRTNTFAVRPLSDTGKQLLRDLLDASAALWNEVNYQRLMRYNDEGGFEGDVWDADTGRLEGQYKGVLGASTAQQVIRKNSEAWRGFFDTKNKYHDESNT
SVTEHPEPPGFRGNEDDGRILKTVIRNTSYTVEWGERSRLEILVGSDLKDRYDHTGRLRLEIAGDPNWPDYEKQGRLDLWYDETDNTFRASQPVTVSDET
RDTPLASEKAALDIGANSLVACTTTTGEQYLYEGRELFQRFRETTREIARLQSKLEEGRYSSERIERLYRKRTRRRDHAQEALCRDLLERLHSEGVDTVY
IGGLTDVLETHWSVKTNAKTHNFWAFKQFTERLACTAEEYGISVEVRSEAWTSQECPQCGSTDRTTRHQDTLTCPCGFEGHADLTASETFLERHTEKAVR
PMARPVRFEWDDHEWSESPHSHRPKEQRTDPSTVHRDGNVASGGS
SVTEHPEPPGFRGNEDDGRILKTVIRNTSYTVEWGERSRLEILVGSDLKDRYDHTGRLRLEIAGDPNWPDYEKQGRLDLWYDETDNTFRASQPVTVSDET
RDTPLASEKAALDIGANSLVACTTTTGEQYLYEGRELFQRFRETTREIARLQSKLEEGRYSSERIERLYRKRTRRRDHAQEALCRDLLERLHSEGVDTVY
IGGLTDVLETHWSVKTNAKTHNFWAFKQFTERLACTAEEYGISVEVRSEAWTSQECPQCGSTDRTTRHQDTLTCPCGFEGHADLTASETFLERHTEKAVR
PMARPVRFEWDDHEWSESPHSHRPKEQRTDPSTVHRDGNVASGGS
Blast result :
Comments
ISNamo22 is 75% (TnpB) aa similar to ISHhu1. The first ORF is a passenger gene annotated as uncharacterized protein.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513