ISNamo26
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1689 bp
Ends
Left end : CTTCCAACAGCGAGAGAATCCCGCCCTTCCCGCGAAGGACGAGCGTTCCGACGCTCTGTCGGAACCGAGGACTGAGTCGTTCGAAAATCGAAGAGTTTCG II struct. : Yes
Right end : GGCGTTCCACGGGTCGGAACTCTCTACCAGCAACAGCGAAACTTAGCTGGTATTCCCCATGCGTGGGAAGCCGCACCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCCGTCTGTTCG | CTAT | AGCTCCAGTCCG | tcac |
DNA sequence
CTTCCAACAGCGAGAGAATCCCGCCCTTCCCGCGAAGGACGAGCGTTCCGACGCTCTGTCGGAACCGAGGACTGAGTCGTTCGAAAATCGAAGAGTTTCG
TGATCACGAGAGACTTTGTCTCTCGGACGACAGGGCGGGAGTGAATCGCGTAAGCTCCGTGCCACAATCTCCGTGACCGTTGCCTGACTGAATACCCAAC
GTACGTATTTAGTAGGGCAAAAACGTACAAAATATTGTGCGAACGGAGATAGATATGGAGCGCGGTGGCGACCTTCACGAGCGGGTCAAAGAGTACGCCC
GTGAGAATGGTATCCGTCATCCGCGTGCCTACCGCGAGCTAATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCGACCCTCG
CCCCGCCGACAGCACACAAGGAGCGGAAACTGTGTGACCTACTCGAAACCTACCGTGAGGGGCTTCACGAGGCGTTCGACGCCGGGTGTGACACGATGAG
CGCTACCAGTGACGTGGTGACGCCCTACGACCTTCCGTATCAGGCGAAAGCGGCACTGTGCAACTACGTCCCACAACTCCACGACACCTACGACGCACAA
GAGTTGGACGACGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGAGACTACGAGTTTACGTGGTGGGCACCGCAAC
CCGGACGAGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAAGAGGGTCTGTGGCACGACCTCGTAGACGGGGACGCTTCGGCGGGACAACT
CCGACTGCAACAGAATCGCACATCGTGGATGTTACACGTCACCGTCGAATTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCAC
ATCGGTCTGGACATTGGTGAAACCGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTACGAAGC
ATCTTCGCAAAGAGATGCACACGACCCTGAAGCGACTCCAAGAGCGTGATGCCGCCGAGTGGCGGATAGACGAGCGATTCGACCACTACCAGAACGCGCT
CACCGATATTGTCGAGAAAGCGTCTTGGCAGGCTGTCGAGTACGCCCGACAATTCGAGAATCCGGTACTCGTGATGGAGAATCTGACGTACATCCGCGAA
GAATTGGACTACGGTTCGTACATGAACCGGCGGCTCCATGCGTGGGCGTTCGCTCGGTTACAGAACCGCGTTGAGGACAAGGCACGAGAGACTGGTATCC
CTGTCGAGTACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCTTGCGGCCACATCGGAAACAGAGCCGCACAAGCCACGTTCCGGTGTACCAACGA
CGGGTGCCACGTTACGGAGTTTCAGGGCGATATAAACGGCTCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCA
GGCAATGACTCGCTTCGGGATGGGAGTGCCTGTGACAGCACCGCGACCCATCGAGAGACGAGCGAGAAACACTCGCAAGTGACTCTCTCGGCGTTCCACG
GGTCGGAACTCTCTACCAGCAACAGCGAAACTTAGCTGGTATTCCCCATGCGTGGGAAGCCGCACCGTTCACGGCGCGGAGGATGTCAC
TGATCACGAGAGACTTTGTCTCTCGGACGACAGGGCGGGAGTGAATCGCGTAAGCTCCGTGCCACAATCTCCGTGACCGTTGCCTGACTGAATACCCAAC
GTACGTATTTAGTAGGGCAAAAACGTACAAAATATTGTGCGAACGGAGATAGATATGGAGCGCGGTGGCGACCTTCACGAGCGGGTCAAAGAGTACGCCC
GTGAGAATGGTATCCGTCATCCGCGTGCCTACCGCGAGCTAATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCGACCCTCG
CCCCGCCGACAGCACACAAGGAGCGGAAACTGTGTGACCTACTCGAAACCTACCGTGAGGGGCTTCACGAGGCGTTCGACGCCGGGTGTGACACGATGAG
CGCTACCAGTGACGTGGTGACGCCCTACGACCTTCCGTATCAGGCGAAAGCGGCACTGTGCAACTACGTCCCACAACTCCACGACACCTACGACGCACAA
GAGTTGGACGACGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGAGACTACGAGTTTACGTGGTGGGCACCGCAAC
CCGGACGAGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAAGAGGGTCTGTGGCACGACCTCGTAGACGGGGACGCTTCGGCGGGACAACT
CCGACTGCAACAGAATCGCACATCGTGGATGTTACACGTCACCGTCGAATTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCAC
ATCGGTCTGGACATTGGTGAAACCGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTACGAAGC
ATCTTCGCAAAGAGATGCACACGACCCTGAAGCGACTCCAAGAGCGTGATGCCGCCGAGTGGCGGATAGACGAGCGATTCGACCACTACCAGAACGCGCT
CACCGATATTGTCGAGAAAGCGTCTTGGCAGGCTGTCGAGTACGCCCGACAATTCGAGAATCCGGTACTCGTGATGGAGAATCTGACGTACATCCGCGAA
GAATTGGACTACGGTTCGTACATGAACCGGCGGCTCCATGCGTGGGCGTTCGCTCGGTTACAGAACCGCGTTGAGGACAAGGCACGAGAGACTGGTATCC
CTGTCGAGTACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCTTGCGGCCACATCGGAAACAGAGCCGCACAAGCCACGTTCCGGTGTACCAACGA
CGGGTGCCACGTTACGGAGTTTCAGGGCGATATAAACGGCTCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCA
GGCAATGACTCGCTTCGGGATGGGAGTGCCTGTGACAGCACCGCGACCCATCGAGAGACGAGCGAGAAACACTCGCAAGTGACTCTCTCGGCGTTCCACG
GGTCGGAACTCTCTACCAGCAACAGCGAAACTTAGCTGGTATTCCCCATGCGTGGGAAGCCGCACCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
144 bp | 47 aa | 237 | 380 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MRTEIDMERGGDLHERVKEYARENGIRHPRAYRELIEQGLETDGNDD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1272 bp | 423 aa | 364 | 1635 | + | No |
AG : TnpB
ORF sequence :
METTTKTLEATLAPPTAHKERKLCDLLETYREGLHEAFDAGCDTMSATSDVVTPYDLPYQAKAALCNYVPQLHDTYDAQELDDDHPVRLTNQAAEFDHSP
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEGLWHDLVDGDASAGQLRLQQNRTSWMLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRTKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASWQAVEYARQFENPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKARETGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDGCHVTEFQGDINGSINVAQRADPWGESVPLKPAGNDSLRDGSACDSTATHRETS
EKHSQVTLSAFHGSELSTSNSET
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEGLWHDLVDGDASAGQLRLQQNRTSWMLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRTKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASWQAVEYARQFENPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKARETGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDGCHVTEFQGDINGSINVAQRADPWGESVPLKPAGNDSLRDGSACDSTATHRETS
EKHSQVTLSAFHGSELSTSNSET
Blast result :
Comments
ISNamo26 is 95% (TnpB) aa similar to ISHmu4. Ths first ORF is a passenger gene annotated as uncharacterized protein.
For the left end (LE), the secondary structure position does not correspond to the clivage site and guide sequence.
For the left end (LE), the secondary structure position does not correspond to the clivage site and guide sequence.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513