ISNamo26

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1689 bp

Ends


Left end : CTTCCAACAGCGAGAGAATCCCGCCCTTCCCGCGAAGGACGAGCGTTCCGACGCTCTGTCGGAACCGAGGACTGAGTCGTTCGAAAATCGAAGAGTTTCG II struct. : Yes
Right end : GGCGTTCCACGGGTCGGAACTCTCTACCAGCAACAGCGAAACTTAGCTGGTATTCCCCATGCGTGGGAAGCCGCACCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCCGTCTGTTCGCTATAGCTCCAGTCCGtcac

DNA sequence

CTTCCAACAGCGAGAGAATCCCGCCCTTCCCGCGAAGGACGAGCGTTCCGACGCTCTGTCGGAACCGAGGACTGAGTCGTTCGAAAATCGAAGAGTTTCG
TGATCACGAGAGACTTTGTCTCTCGGACGACAGGGCGGGAGTGAATCGCGTAAGCTCCGTGCCACAATCTCCGTGACCGTTGCCTGACTGAATACCCAAC
GTACGTATTTAGTAGGGCAAAAACGTACAAAATATTGTGCGAACGGAGATAGATATGGAGCGCGGTGGCGACCTTCACGAGCGGGTCAAAGAGTACGCCC
GTGAGAATGGTATCCGTCATCCGCGTGCCTACCGCGAGCTAATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCGACCCTCG
CCCCGCCGACAGCACACAAGGAGCGGAAACTGTGTGACCTACTCGAAACCTACCGTGAGGGGCTTCACGAGGCGTTCGACGCCGGGTGTGACACGATGAG
CGCTACCAGTGACGTGGTGACGCCCTACGACCTTCCGTATCAGGCGAAAGCGGCACTGTGCAACTACGTCCCACAACTCCACGACACCTACGACGCACAA
GAGTTGGACGACGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGAGACTACGAGTTTACGTGGTGGGCACCGCAAC
CCGGACGAGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAAGAGGGTCTGTGGCACGACCTCGTAGACGGGGACGCTTCGGCGGGACAACT
CCGACTGCAACAGAATCGCACATCGTGGATGTTACACGTCACCGTCGAATTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCAC
ATCGGTCTGGACATTGGTGAAACCGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTACGAAGC
ATCTTCGCAAAGAGATGCACACGACCCTGAAGCGACTCCAAGAGCGTGATGCCGCCGAGTGGCGGATAGACGAGCGATTCGACCACTACCAGAACGCGCT
CACCGATATTGTCGAGAAAGCGTCTTGGCAGGCTGTCGAGTACGCCCGACAATTCGAGAATCCGGTACTCGTGATGGAGAATCTGACGTACATCCGCGAA
GAATTGGACTACGGTTCGTACATGAACCGGCGGCTCCATGCGTGGGCGTTCGCTCGGTTACAGAACCGCGTTGAGGACAAGGCACGAGAGACTGGTATCC
CTGTCGAGTACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCTTGCGGCCACATCGGAAACAGAGCCGCACAAGCCACGTTCCGGTGTACCAACGA
CGGGTGCCACGTTACGGAGTTTCAGGGCGATATAAACGGCTCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCA
GGCAATGACTCGCTTCGGGATGGGAGTGCCTGTGACAGCACCGCGACCCATCGAGAGACGAGCGAGAAACACTCGCAAGTGACTCTCTCGGCGTTCCACG
GGTCGGAACTCTCTACCAGCAACAGCGAAACTTAGCTGGTATTCCCCATGCGTGGGAAGCCGCACCGTTCACGGCGCGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
144 bp47 aa237380+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MRTEIDMERGGDLHERVKEYARENGIRHPRAYRELIEQGLETDGNDD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1272 bp423 aa3641635+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

METTTKTLEATLAPPTAHKERKLCDLLETYREGLHEAFDAGCDTMSATSDVVTPYDLPYQAKAALCNYVPQLHDTYDAQELDDDHPVRLTNQAAEFDHSP
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEGLWHDLVDGDASAGQLRLQQNRTSWMLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRTKHLRKEMHTTLKRLQERDAAEWRIDERFDHYQNALTDIVEKASWQAVEYARQFENPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKARETGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDGCHVTEFQGDINGSINVAQRADPWGESVPLKPAGNDSLRDGSACDSTATHRETS
EKHSQVTLSAFHGSELSTSNSET

 

Blast result :
Comments
ISNamo26 is 95% (TnpB) aa similar to ISHmu4. Ths first ORF is a passenger gene annotated as uncharacterized protein.
For the left end (LE), the secondary structure position does not correspond to the clivage site and guide sequence.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513