ISNamo24
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1424 bp
Ends
Left end : AGGCTGTCGAGGCGAATGCCGCGGGGCTTGACCTCGTGGATGAAGCCGACAATCCGTGACATAAGCCATTAAGTAGCAACACAACGATAATCGAGGTACA II struct. : Yes
Right end : GTCGTTGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGAAGTCTTCCGCGATGACGAGACGCTCCGCGTCTCGAACCACTTGACCCTGAGGCGGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GGCAGCCAGCTG | TTTAC | GCTGAATGTCCG | TCAC |
DNA sequence
AGGCTGTCGAGGCGAATGCCGCGGGGCTTGACCTCGTGGATGAAGCCGACAATCCGTGACATAAGCCATTAAGTAGCAACACAACGATAATCGAGGTACA
GCGATGTGGTACGACTACCGCTTCCGCGCCTACCCTGACCGAACAGGTGTGACTGCGGAGGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAATC
ACACCCGCTACGAATATAATGTCCTCGACATAGACGAGGACAACATCGGTTCGGCGTACCAACACCAGAAACGCCTCACCGAATGGAAGGACGAGTGGCC
TGTGTTCTCCGAAGTCCACTCGAAGGCGTTGCAGAAGACCGTCGAACGCTTCTACGACAATCTCTCGAACCTCTCCAAGAAAAAGCAGAACGGGCACAAG
GTTGGGTGGCTCAAGTGGAAGTCCTCAAAAGAGTACCAGAGTATGACGTACTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGA
TCTGGCTCTCCAAAATCGGTGGCATCCCCATTCGCTACCACCGCGAAATCCCCGATAACGCCACTATCAAAGAAGTCACGTTGAAAAAGGAGACGACTGG
TGAGTGGTACGTCACGTTCGGCCTCGAAGTCGAGGACGCCACGCTCCCCGAGAAACCCGACATAGACGGCTTGGATGTTGAGGACTGCGTTGGCATCGAC
CTCGGCATCAACAACTACATCTACACGTCGGACGGCGACAGCGTGGACTGGCTCGACGTTTCTGACGAGTACGAGCGCCTACGTCGGGAACAACGTAATC
TCTCACAGAAAGAACACGGGAGTAACAACTGGGAGAAACAGCGCCGTGAGGTCGCCAAGGTCAAGCGCAGAATTAAGCGGAAGGTTGAAGACTTCCAGCA
CAAGCTCACGACGTGGCTCGTCAAGACGTATGACGCTGTGCTCGTGGAAGACTTGAACATCGCGGGGATGCTCCAAAGCGACGGAAATTCACGGAACAAG
CAGGACGCCGCGTGGCGCGGATTCATCGAGATGCTGGAGTACAAGGGCGACCTGCACGGTACGCACGTCGTCCAAGTGAACCCTGCGGGGACGACCAAGG
AGTGTGCGGAGTGTGGTGTTGAGACGGAGAAGCCGTTGTGGGTTCGGGAACACAGTTGTCCGAGTTGTGGGTTCGAGGTGGACAGGGACGCGAATGCGTC
GTACAACATTCTTTCTCGTGGGCTTCAGGAGTTAGGTTTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGTCGG
TCTTCGTCGGTTCCTGCAAGTCGTGTCGTTGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGAAGTCTTCCGCGATGACGAGACGCTCCGCGTCTCGAA
CCACTTGACCCTGAGGCGGTTCAC
GCGATGTGGTACGACTACCGCTTCCGCGCCTACCCTGACCGAACAGGTGTGACTGCGGAGGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAATC
ACACCCGCTACGAATATAATGTCCTCGACATAGACGAGGACAACATCGGTTCGGCGTACCAACACCAGAAACGCCTCACCGAATGGAAGGACGAGTGGCC
TGTGTTCTCCGAAGTCCACTCGAAGGCGTTGCAGAAGACCGTCGAACGCTTCTACGACAATCTCTCGAACCTCTCCAAGAAAAAGCAGAACGGGCACAAG
GTTGGGTGGCTCAAGTGGAAGTCCTCAAAAGAGTACCAGAGTATGACGTACTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGA
TCTGGCTCTCCAAAATCGGTGGCATCCCCATTCGCTACCACCGCGAAATCCCCGATAACGCCACTATCAAAGAAGTCACGTTGAAAAAGGAGACGACTGG
TGAGTGGTACGTCACGTTCGGCCTCGAAGTCGAGGACGCCACGCTCCCCGAGAAACCCGACATAGACGGCTTGGATGTTGAGGACTGCGTTGGCATCGAC
CTCGGCATCAACAACTACATCTACACGTCGGACGGCGACAGCGTGGACTGGCTCGACGTTTCTGACGAGTACGAGCGCCTACGTCGGGAACAACGTAATC
TCTCACAGAAAGAACACGGGAGTAACAACTGGGAGAAACAGCGCCGTGAGGTCGCCAAGGTCAAGCGCAGAATTAAGCGGAAGGTTGAAGACTTCCAGCA
CAAGCTCACGACGTGGCTCGTCAAGACGTATGACGCTGTGCTCGTGGAAGACTTGAACATCGCGGGGATGCTCCAAAGCGACGGAAATTCACGGAACAAG
CAGGACGCCGCGTGGCGCGGATTCATCGAGATGCTGGAGTACAAGGGCGACCTGCACGGTACGCACGTCGTCCAAGTGAACCCTGCGGGGACGACCAAGG
AGTGTGCGGAGTGTGGTGTTGAGACGGAGAAGCCGTTGTGGGTTCGGGAACACAGTTGTCCGAGTTGTGGGTTCGAGGTGGACAGGGACGCGAATGCGTC
GTACAACATTCTTTCTCGTGGGCTTCAGGAGTTAGGTTTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGTCGG
TCTTCGTCGGTTCCTGCAAGTCGTGTCGTTGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGAAGTCTTCCGCGATGACGAGACGCTCCGCGTCTCGAA
CCACTTGACCCTGAGGCGGTTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1305 bp | 434 aa | 104 | 1408 | + | No |
AG : TnpB
ORF sequence :
MWYDYRFRAYPDRTGVTAEAERHIDIHRQAYNHTRYEYNVLDIDEDNIGSAYQHQKRLTEWKDEWPVFSEVHSKALQKTVERFYDNLSNLSKKKQNGHKV
GWLKWKSSKEYQSMTYSQSGFELKNTSGRTATIWLSKIGGIPIRYHREIPDNATIKEVTLKKETTGEWYVTFGLEVEDATLPEKPDIDGLDVEDCVGIDL
GINNYIYTSDGDSVDWLDVSDEYERLRREQRNLSQKEHGSNNWEKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVLVEDLNIAGMLQSDGNSRNKQ
DAAWRGFIEMLEYKGDLHGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEVDRDANASYNILSRGLQELGLGQAEVTPVETATAVETDGGRS
SSVPASRVVETGSLGVVRKTKSSAMTRRSASRTT
GWLKWKSSKEYQSMTYSQSGFELKNTSGRTATIWLSKIGGIPIRYHREIPDNATIKEVTLKKETTGEWYVTFGLEVEDATLPEKPDIDGLDVEDCVGIDL
GINNYIYTSDGDSVDWLDVSDEYERLRREQRNLSQKEHGSNNWEKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVLVEDLNIAGMLQSDGNSRNKQ
DAAWRGFIEMLEYKGDLHGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEVDRDANASYNILSRGLQELGLGQAEVTPVETATAVETDGGRS
SSVPASRVVETGSLGVVRKTKSSAMTRRSASRTT
Blast result :
Comments
ISNamo24 is 94% (TnpB) aa similar to ISNph12.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513