ISNamo24

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1424 bp

Ends


Left end : AGGCTGTCGAGGCGAATGCCGCGGGGCTTGACCTCGTGGATGAAGCCGACAATCCGTGACATAAGCCATTAAGTAGCAACACAACGATAATCGAGGTACA II struct. : Yes
Right end : GTCGTTGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGAAGTCTTCCGCGATGACGAGACGCTCCGCGTCTCGAACCACTTGACCCTGAGGCGGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GGCAGCCAGCTGTTTACGCTGAATGTCCGTCAC

DNA sequence

AGGCTGTCGAGGCGAATGCCGCGGGGCTTGACCTCGTGGATGAAGCCGACAATCCGTGACATAAGCCATTAAGTAGCAACACAACGATAATCGAGGTACA
GCGATGTGGTACGACTACCGCTTCCGCGCCTACCCTGACCGAACAGGTGTGACTGCGGAGGCGGAACGCCACATCGACATCCACCGCCAAGCCTACAATC
ACACCCGCTACGAATATAATGTCCTCGACATAGACGAGGACAACATCGGTTCGGCGTACCAACACCAGAAACGCCTCACCGAATGGAAGGACGAGTGGCC
TGTGTTCTCCGAAGTCCACTCGAAGGCGTTGCAGAAGACCGTCGAACGCTTCTACGACAATCTCTCGAACCTCTCCAAGAAAAAGCAGAACGGGCACAAG
GTTGGGTGGCTCAAGTGGAAGTCCTCAAAAGAGTACCAGAGTATGACGTACTCGCAGTCTGGCTTCGAACTCAAAAACACGAGTGGTCGGACTGCCACGA
TCTGGCTCTCCAAAATCGGTGGCATCCCCATTCGCTACCACCGCGAAATCCCCGATAACGCCACTATCAAAGAAGTCACGTTGAAAAAGGAGACGACTGG
TGAGTGGTACGTCACGTTCGGCCTCGAAGTCGAGGACGCCACGCTCCCCGAGAAACCCGACATAGACGGCTTGGATGTTGAGGACTGCGTTGGCATCGAC
CTCGGCATCAACAACTACATCTACACGTCGGACGGCGACAGCGTGGACTGGCTCGACGTTTCTGACGAGTACGAGCGCCTACGTCGGGAACAACGTAATC
TCTCACAGAAAGAACACGGGAGTAACAACTGGGAGAAACAGCGCCGTGAGGTCGCCAAGGTCAAGCGCAGAATTAAGCGGAAGGTTGAAGACTTCCAGCA
CAAGCTCACGACGTGGCTCGTCAAGACGTATGACGCTGTGCTCGTGGAAGACTTGAACATCGCGGGGATGCTCCAAAGCGACGGAAATTCACGGAACAAG
CAGGACGCCGCGTGGCGCGGATTCATCGAGATGCTGGAGTACAAGGGCGACCTGCACGGTACGCACGTCGTCCAAGTGAACCCTGCGGGGACGACCAAGG
AGTGTGCGGAGTGTGGTGTTGAGACGGAGAAGCCGTTGTGGGTTCGGGAACACAGTTGTCCGAGTTGTGGGTTCGAGGTGGACAGGGACGCGAATGCGTC
GTACAACATTCTTTCTCGTGGGCTTCAGGAGTTAGGTTTGGGACAGGCCGAAGTCACGCCCGTGGAGACTGCGACCGCTGTGGAAACCGATGGAGGTCGG
TCTTCGTCGGTTCCTGCAAGTCGTGTCGTTGAAACGGGAAGCCTCGGGGTCGTACGGAAGACGAAGTCTTCCGCGATGACGAGACGCTCCGCGTCTCGAA
CCACTTGACCCTGAGGCGGTTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1305 bp434 aa1041408+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MWYDYRFRAYPDRTGVTAEAERHIDIHRQAYNHTRYEYNVLDIDEDNIGSAYQHQKRLTEWKDEWPVFSEVHSKALQKTVERFYDNLSNLSKKKQNGHKV
GWLKWKSSKEYQSMTYSQSGFELKNTSGRTATIWLSKIGGIPIRYHREIPDNATIKEVTLKKETTGEWYVTFGLEVEDATLPEKPDIDGLDVEDCVGIDL
GINNYIYTSDGDSVDWLDVSDEYERLRREQRNLSQKEHGSNNWEKQRREVAKVKRRIKRKVEDFQHKLTTWLVKTYDAVLVEDLNIAGMLQSDGNSRNKQ
DAAWRGFIEMLEYKGDLHGTHVVQVNPAGTTKECAECGVETEKPLWVREHSCPSCGFEVDRDANASYNILSRGLQELGLGQAEVTPVETATAVETDGGRS
SSVPASRVVETGSLGVVRKTKSSAMTRRSASRTT

 

Blast result :
Comments
ISNamo24 is 94% (TnpB) aa similar to ISNph12.
References
1] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. Genome Announc. (2013) 1: e0009513