ISNamo21
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1736 bp
Ends
Left end : AGCGGTAGCGAGGCGAAAGCCCACGGCTTTAGCCGTGGGATGAAGCCGACAACAGGGAAGCTAACCACGTCCGATGGCCGGCGTGGATTTCCCACCGCCT II struct. : Yes
Right end : TGGTATCAGCCCCGCTACGACGTGCTCATCTCCAGTGAATGGGCAGCACCGAACACGTACTATCCGGGGTTCGACCTCGACGACGTCGAGGCCGGCAACT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATGAACTACGA | TTAC | TGGTATCAGCCC | TCAA |
DNA sequence
AGCGGTAGCGAGGCGAAAGCCCACGGCTTTAGCCGTGGGATGAAGCCGACAACAGGGAAGCTAACCACGTCCGATGGCCGGCGTGGATTTCCCACCGCCT
ACACCGCGTCGTCACCTTCCATTCGCCGCGCTCCCTGCAATAGCAGTCCCTTCCATGTCAACCCGTGTTTCTTCTTGATCCGCTTCAACTCCTCGTACTG
CTCGTCGTCGTCCATCTCGACATATATCTTATTCGTCTCACCCATACTTAACCCATACATACCCAACTTATATATAGGTTCAGGAGCTACACGTTGGTAC
AGCGATGAAGCGCGTCAACGAGTTCGAGATACGCCCACGCACCCCCGAACAGCGTGAGGCACTCCTCGAACTCCTTGACGCGTCAGCCGCACTCTGGAAC
GAACTCACCTACAACCGCAGACAAGCCTTCTTCGACGACAACTCCGTGTGGAACGCCACCAACCCCAGCGACCGCTACAAAAACGTACTCGGGAGCGCGA
CCGCCCAACAAATCCCGCGCAAGAACAGCGAGGCGTGGCGGTCGTTCTTCAGCCTCAACGAAAAATACTACAGCGGCAAGCGCGACGAGAAACCCAGCCC
GCCCGGCTACTGGGGCAACGAGGAGGATGGCCGAGAGTTGCGGACGTACATCCGCAACGACCAATACACCCTCCAGTGGGGCGACCGCAGCCGCCTCGAA
ATCCCCGTCGGGAAGGCGTTGAAAGACGAGTACGCCATCACCGGCAGACTCCGCCTCGAAGCCTGCGGCGACCCGAAGTGGGATGGGGAACAGGGTCGGT
TGGAACTGGTGTACGACAAGACTTGCGACACGTTCAGGGCACTTCAACCCGTCACCGTGCCTGATTCTCGACGGGATTCACGGAAAATCGAAGATTTTCC
TGAAGTCGAAAACGCGCAGCGTTTTCGGAATTCACCACTGGCCTCTCACGAGGCCGCCTTGGACGTGGGCGCGAACAACCTCGTCGCCTGCACCACCACA
ACCGGCCAGCAGTACCTCTACGAGGGCCGCGAACTGTTCGCCCATTTCCGTGACACTACCGAAGAGATTGCCCACTACCAGTCGATGCTTGATAATCAAC
GACGAACAAGCAAGCGCATCGACAGTTTGTACCGCCAACGCACTGAACGACGAAATCACGCGCAGGACGCGCTGGTGCGCGATCTCATCGAACGATTGCA
CGACGAAGGTGTTTGTCGGGTGTACGTCGGCGATCTCGAAGACGTGCTGGAGACGCATTGGAAATGCGTCGTGAACGAGAAGACGCACAACTTCTGGGCG
TTCTCGCAGTTCATCGACCGCCTCAAGTGTGTCTGCGAGGAGTACGGTATTGAGGTGGTTGAGAAGTCGGAAGCGTTGACGACCCAAGAGTGTCCGGAGT
GCGGCGAGCGAGAGGAGACGCATCGGAACGGAGACGTATTCCGGTGCGGTGCGTGTGGGTTCGAGGGACACGCGGATTTGAAGGCGAGCAGGGTGTTCCT
TGACCGTGAGGCCGGTGGTGAAGTTGGGCCGATGGCCCGGCCCGTGCGCCTCGAGTGGGACAATCACGAGTGGCGGCCTGCCACAACCGCCCCGCCTCTT
CGGCGGGCAAATCCCAAAGAGGATCGCACAGACCGGAGTACCTGCCGCGAGGTGGGGAAAGTTGCCTCCGTGGGATCGTCATAGCCGAAATCCCCACCGG
AGGAATCCCACCCCTTCAGGGGTGGGAGGAAGTCAATGGTATCAGCCCCGCTACGACGTGCTCATCTCCAGTGAATGGGCAGCACCGAACACGTACTATC
CGGGGTTCGACCTCGACGACGTCGAGGCCGGCAACT
ACACCGCGTCGTCACCTTCCATTCGCCGCGCTCCCTGCAATAGCAGTCCCTTCCATGTCAACCCGTGTTTCTTCTTGATCCGCTTCAACTCCTCGTACTG
CTCGTCGTCGTCCATCTCGACATATATCTTATTCGTCTCACCCATACTTAACCCATACATACCCAACTTATATATAGGTTCAGGAGCTACACGTTGGTAC
AGCGATGAAGCGCGTCAACGAGTTCGAGATACGCCCACGCACCCCCGAACAGCGTGAGGCACTCCTCGAACTCCTTGACGCGTCAGCCGCACTCTGGAAC
GAACTCACCTACAACCGCAGACAAGCCTTCTTCGACGACAACTCCGTGTGGAACGCCACCAACCCCAGCGACCGCTACAAAAACGTACTCGGGAGCGCGA
CCGCCCAACAAATCCCGCGCAAGAACAGCGAGGCGTGGCGGTCGTTCTTCAGCCTCAACGAAAAATACTACAGCGGCAAGCGCGACGAGAAACCCAGCCC
GCCCGGCTACTGGGGCAACGAGGAGGATGGCCGAGAGTTGCGGACGTACATCCGCAACGACCAATACACCCTCCAGTGGGGCGACCGCAGCCGCCTCGAA
ATCCCCGTCGGGAAGGCGTTGAAAGACGAGTACGCCATCACCGGCAGACTCCGCCTCGAAGCCTGCGGCGACCCGAAGTGGGATGGGGAACAGGGTCGGT
TGGAACTGGTGTACGACAAGACTTGCGACACGTTCAGGGCACTTCAACCCGTCACCGTGCCTGATTCTCGACGGGATTCACGGAAAATCGAAGATTTTCC
TGAAGTCGAAAACGCGCAGCGTTTTCGGAATTCACCACTGGCCTCTCACGAGGCCGCCTTGGACGTGGGCGCGAACAACCTCGTCGCCTGCACCACCACA
ACCGGCCAGCAGTACCTCTACGAGGGCCGCGAACTGTTCGCCCATTTCCGTGACACTACCGAAGAGATTGCCCACTACCAGTCGATGCTTGATAATCAAC
GACGAACAAGCAAGCGCATCGACAGTTTGTACCGCCAACGCACTGAACGACGAAATCACGCGCAGGACGCGCTGGTGCGCGATCTCATCGAACGATTGCA
CGACGAAGGTGTTTGTCGGGTGTACGTCGGCGATCTCGAAGACGTGCTGGAGACGCATTGGAAATGCGTCGTGAACGAGAAGACGCACAACTTCTGGGCG
TTCTCGCAGTTCATCGACCGCCTCAAGTGTGTCTGCGAGGAGTACGGTATTGAGGTGGTTGAGAAGTCGGAAGCGTTGACGACCCAAGAGTGTCCGGAGT
GCGGCGAGCGAGAGGAGACGCATCGGAACGGAGACGTATTCCGGTGCGGTGCGTGTGGGTTCGAGGGACACGCGGATTTGAAGGCGAGCAGGGTGTTCCT
TGACCGTGAGGCCGGTGGTGAAGTTGGGCCGATGGCCCGGCCCGTGCGCCTCGAGTGGGACAATCACGAGTGGCGGCCTGCCACAACCGCCCCGCCTCTT
CGGCGGGCAAATCCCAAAGAGGATCGCACAGACCGGAGTACCTGCCGCGAGGTGGGGAAAGTTGCCTCCGTGGGATCGTCATAGCCGAAATCCCCACCGG
AGGAATCCCACCCCTTCAGGGGTGGGAGGAAGTCAATGGTATCAGCCCCGCTACGACGTGCTCATCTCCAGTGAATGGGCAGCACCGAACACGTACTATC
CGGGGTTCGACCTCGACGACGTCGAGGCCGGCAACT
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
147 bp | 48 aa | 245 | 99 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGETNKIYVEMDDDEQYEELKRIKKKHGLTWKGLLLQGARRMEGDDAV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1380 bp | 459 aa | 305 | 1684 | + | No |
AG : TnpB
ORF sequence :
MKRVNEFEIRPRTPEQREALLELLDASAALWNELTYNRRQAFFDDNSVWNATNPSDRYKNVLGSATAQQIPRKNSEAWRSFFSLNEKYYSGKRDEKPSPP
GYWGNEEDGRELRTYIRNDQYTLQWGDRSRLEIPVGKALKDEYAITGRLRLEACGDPKWDGEQGRLELVYDKTCDTFRALQPVTVPDSRRDSRKIEDFPE
VENAQRFRNSPLASHEAALDVGANNLVACTTTTGQQYLYEGRELFAHFRDTTEEIAHYQSMLDNQRRTSKRIDSLYRQRTERRNHAQDALVRDLIERLHD
EGVCRVYVGDLEDVLETHWKCVVNEKTHNFWAFSQFIDRLKCVCEEYGIEVVEKSEALTTQECPECGEREETHRNGDVFRCGACGFEGHADLKASRVFLD
REAGGEVGPMARPVRLEWDNHEWRPATTAPPLRRANPKEDRTDRSTCREVGKVASVGSS
GYWGNEEDGRELRTYIRNDQYTLQWGDRSRLEIPVGKALKDEYAITGRLRLEACGDPKWDGEQGRLELVYDKTCDTFRALQPVTVPDSRRDSRKIEDFPE
VENAQRFRNSPLASHEAALDVGANNLVACTTTTGQQYLYEGRELFAHFRDTTEEIAHYQSMLDNQRRTSKRIDSLYRQRTERRNHAQDALVRDLIERLHD
EGVCRVYVGDLEDVLETHWKCVVNEKTHNFWAFSQFIDRLKCVCEEYGIEVVEKSEALTTQECPECGEREETHRNGDVFRCGACGFEGHADLKASRVFLD
REAGGEVGPMARPVRLEWDNHEWRPATTAPPLRRANPKEDRTDRSTCREVGKVASVGSS
Blast result :
Comments
ISNamo21 is 73% aa (TnpB) similar to ISHbo5.
The first ORF is a passenger gene annotated as hypothetical protein.
The first ORF is a passenger gene annotated as hypothetical protein.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513