ISNamo20

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1536 bp

Ends


Left end : AGAGAGCAAGGAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAACTCCTCCACAACCCACCGCCGATAGCACGGCTGGATATTCCACCGTTCTC II struct. : Yes
Right end : CCAACCTCGGACAGAGGTGGTGGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGTGGGATTCCGCCGCCTTCAGGCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGCGTTTTTATTGGTGCCCCGGTTCAA
TGACGGGCGCGTTCGACGAGGAACTCAA
CAGCCGACGCTGTGCCCGTCGCGATCAA
CATCCGCCGTGTCAGTGAAGTCCATCAA
TGGCCGCGTTTTTTATGTACGGTCGAACTCAA
CGTGTGCCGGTGTTATTTGAGTTCGTCCTCAA

DNA sequence

AGAGAGCAAGGAGAATACCTGCGGCTTTAGCCGCAGGATGAATCCGACAACTCCTCCACAACCCACCGCCGATAGCACGGCTGGATATTCCACCGTTCTC
AAACCGAACCTTTACAAGAAACACAAGTATAAGTGATTATAGAGGCGTTCAGAATGCTGGAAATCCATCGAACCCACCGAGCGAAAATCCTCAACCACAA
CCAAGTGGCTGAGATGCTCGACCGGCACGGGTGGAGTGCCAGCAAACTCTGGAACGTCGCTAATTACCACTCTCGACAAAAGTGGGATGATACGGGTGAG
ATTCCAGACCACAGCGACCTCAAAGACGAGTTGAAAGGTCACTCAAAGTACAAGGGATTGCACTCGCAGTCCAGTCAGCGCGTTCTGGAGGAACTCGCTG
AAGCCTTCAACTCGTGGTACAAAAAGAGGAAGTCTGATAATCGAGCGAATCCGCCCGGCTACCGCAAAAAAAACTACTACGACGACCACGGCAACCGCGT
CCACGAGGAACATCCGCGTTCGACCGTGACGTGGAAGCAAAACGGCATCAAACACGACACGAACAACAACCGTGTCCGTCTCTCAAAGGGCGCGAATCAC
AAGGAACACCCGAAAGCATGGGAGTACATCCTTGTCGAATACGAGACGCGCCCCGGTGTCACCGTTGAGAACCTACAACAGGTCAGAGCCGTCTACGACA
AAGCAAAGAGGCGCTGGGAACTGCACCTCGTCTGTAAGGATGAAATCGAGACACCCACCGCACCCGGAAACGAGACAGCGGGTATCGACCTCGGCATCTG
TAACTTCGCGGCGGTCACGTACAGCACCGAGCAAGCTGACCTCTACCCCGGCAACCGGTTGAAACAGGACGGGTACTACTTCCCGAAAGAAATCGCCAAG
TGCGACGACTCGGGTGGTGAAGAAGCGACCCGTCTCCACGCGAAGTGGTCGGAGCGCCGCACCCACTTTTTCCACTCGTTAGCGAAACACATCGTCCAGC
GATGTATCGAGAACAGTGTTGGGCGTATCAACATCGGGAAGCTCGCTGGTGTCCGTGAAGACGACAACGGCGAGTCGAAGAACTGGGGCAAGCACGGGAA
CCTCGACCTGCACGGCTGGGCGTTCGACCGCTTCACCTCGATTCTCGAATACAAGGCCAAAGTCGAGGGTGTCGAAGTCGTAGAGGTCTCAGAGCGCGAC
ACGAGCAAGACGTGTTGCGTCTGCGGTAGAAAAGACGAGAGTCAGCGTGTCGAACGTGGCTTGTATGTCTGCGAGCCGTGTGACGCGGCGTTCAACGCTG
ACGTGAATGGGGCGGAGAACATCCGTCTCGAGTTGAAGCAAAGTAACTCCGAGTCTGCTCCCGATTTGGGTGGGGATAGGAGTACCGGCTGGTTGGCACA
GCCCGAAGTCTACCTTCATGACCTCTCCCGAGGATTCCAACCTCGGACAGAGGTGGTGGACTGCAAACCCTAATATCCCAATCCAGCGGTGCGGTGCCGT
GGGATTCCGCCGCCTTCAGGCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1320 bp439 aa1541473+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLEIHRTHRAKILNHNQVAEMLDRHGWSASKLWNVANYHSRQKWDDTGEIPDHSDLKDELKGHSKYKGLHSQSSQRVLEELAEAFNSWYKKRKSDNRANP
PGYRKKNYYDDHGNRVHEEHPRSTVTWKQNGIKHDTNNNRVRLSKGANHKEHPKAWEYILVEYETRPGVTVENLQQVRAVYDKAKRRWELHLVCKDEIET
PTAPGNETAGIDLGICNFAAVTYSTEQADLYPGNRLKQDGYYFPKEIAKCDDSGGEEATRLHAKWSERRTHFFHSLAKHIVQRCIENSVGRINIGKLAGV
REDDNGESKNWGKHGNLDLHGWAFDRFTSILEYKAKVEGVEVVEVSERDTSKTCCVCGRKDESQRVERGLYVCEPCDAAFNADVNGAENIRLELKQSNSE
SAPDLGGDRSTGWLAQPEVYLHDLSRGFQPRTEVVDCKP

 

Blast result :
Comments
ISNamo20 is 91% (TnpB) aa similar to ISHli3.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513