ISBvi7
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000615 | ND | Burkholderia vietnamiensis | Burkholderia vietnamiensis G4 Burkholderia multivorans DDS 15A-1 |
DNA section
IS Length : 1177 bp
Ends
IR Length : 18/28
IRL : GGACTTTTTCAGTATGAAAGGAGCCGTACGATGAAACGCAAGCGCTTCAG
IRR : GGTTTTCAGTGCCAAAGGCAATGTTAGTCTTCGGCGTTCTGTTGGTCCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTTTTCGGC | GGGACCGTTC | 0 |
DNA sequence
GGACTTTTTCAGTATGAAAGGAGCCGTACGATGAAACGCAAGCGCTTCAGTGTCGAGCAGATTGTGGCGGTGTTGAAACAGGCCGAAGCAGGCATGCCGG
TGGCGGAACTGATTCGTCACGTGGGCATTTCGGAGCAAACCTTCTATCGCTGGAAGAAGGTGTATGCCGGTTTGCAGACGGACCAGGTGCGGCAGTTCAA
GCAGCTTCAAGACGAGAACGCCCAACTGAAGAAGGTGGTCGCGGAGCTGACGTTGGACAAGGCGATGCTGACCGACGTATTGAAAAAAAAGTGGTGAAGT
CCTCGCCGAGGCGCCACGTCGTGGATTATCTAAAGTCCGCCTATGGAGTAGCAGAGCGGCGTGCCTGTCGTCTGGTGGCCATATCGCGCTCGGTGTACCA
GTATCGCAGTCACCGCGACCCGGAGACTGCATTGCGGCAGCGCATGTGTGAAATCGCGGCGACGCGGGTACGCTATGGTTACCGCAAGATACGTGTGCTG
CTGCTACGGGAGGGCTATCAGGTAAGCAAGAATCGGCTGTACCGTCTGTATCGTGAGGAAGGGCTGTCGCTGCGCTACAGACCAAATCGCAAGCGACGTG
CACAGATGAGCCGCCCGGCACGTGCAAAGTCGACGGCGGCAAATCAGGCGTGGAGCTTGGACTTCGTCGCCGACCAGCTTTCGAACGGCCAGAGGTTCCG
CGCGCTGACCATCATCGACGTCTTTACGCGCGAAGCACTAGCCATCGATGTTGGCCAGCGACTGAGCGCTTCAGATGTCGTGCGTGTACTGGATGAGCTG
AGGAGCAAACGCGGAGCGCCCCGCACGCTGTTTTGTGACAACGGCTCGGAATTTACGAGTCAGGTGATGGACCTGTGGGCTTACCATCACAAGGTCGAGA
TTGCCTTCAGCCGGCCCGGCAAGCCAACGGATAACGCATTCGTGGAGTCGTTCAACGGCACGCTACGCGATGAATGCCTGAACGTGCACTGGTTCACATC
GCTGGCCGACGCCAGGGAGCAAATTGAACGATGGCGGGTCGAATACAACGAGAGTCGGCCTCACAGGGCTCTCGATGAAGTGCCGCCTGCCGAATACGTC
CGTCAGTTGGGCCTGCAGGCCCAACTGACGGACCAACAGAACGCCGAAGACTAACATTGCCTTTGGCACTGAAAACC
TGGCGGAACTGATTCGTCACGTGGGCATTTCGGAGCAAACCTTCTATCGCTGGAAGAAGGTGTATGCCGGTTTGCAGACGGACCAGGTGCGGCAGTTCAA
GCAGCTTCAAGACGAGAACGCCCAACTGAAGAAGGTGGTCGCGGAGCTGACGTTGGACAAGGCGATGCTGACCGACGTATTGAAAAAAAAGTGGTGAAGT
CCTCGCCGAGGCGCCACGTCGTGGATTATCTAAAGTCCGCCTATGGAGTAGCAGAGCGGCGTGCCTGTCGTCTGGTGGCCATATCGCGCTCGGTGTACCA
GTATCGCAGTCACCGCGACCCGGAGACTGCATTGCGGCAGCGCATGTGTGAAATCGCGGCGACGCGGGTACGCTATGGTTACCGCAAGATACGTGTGCTG
CTGCTACGGGAGGGCTATCAGGTAAGCAAGAATCGGCTGTACCGTCTGTATCGTGAGGAAGGGCTGTCGCTGCGCTACAGACCAAATCGCAAGCGACGTG
CACAGATGAGCCGCCCGGCACGTGCAAAGTCGACGGCGGCAAATCAGGCGTGGAGCTTGGACTTCGTCGCCGACCAGCTTTCGAACGGCCAGAGGTTCCG
CGCGCTGACCATCATCGACGTCTTTACGCGCGAAGCACTAGCCATCGATGTTGGCCAGCGACTGAGCGCTTCAGATGTCGTGCGTGTACTGGATGAGCTG
AGGAGCAAACGCGGAGCGCCCCGCACGCTGTTTTGTGACAACGGCTCGGAATTTACGAGTCAGGTGATGGACCTGTGGGCTTACCATCACAAGGTCGAGA
TTGCCTTCAGCCGGCCCGGCAAGCCAACGGATAACGCATTCGTGGAGTCGTTCAACGGCACGCTACGCGATGAATGCCTGAACGTGCACTGGTTCACATC
GCTGGCCGACGCCAGGGAGCAAATTGAACGATGGCGGGTCGAATACAACGAGAGTCGGCCTCACAGGGCTCTCGATGAAGTGCCGCCTGCCGAATACGTC
CGTCAGTTGGGCCTGCAGGCCCAACTGACGGACCAACAGAACGCCGAAGACTAACATTGCCTTTGGCACTGAAAACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 31 | 297 | + | No |
Description : First part of the transposase
ORF sequence :
MKRKRFSVEQIVAVLKQAEAGMPVAELIRHVGISEQTFYRWKKVYAGLQTDQVRQFKQLQDENAQLKKVVAELTLDKAMLTDVLKKKW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 18 | 1154 | + | No |
Description : Second part of the transposase
ORF sequence :
KEPYDETQALQCRADCGGVETGRSRHAGGGTDSSRGHFGANLLSLEEGVCRFADGPGAAVQAASRRERPTEEGGRGADVGQGDADRRIEKKVVKSSPRRH
VVDYLKSAYGVAERRACRLVAISRSVYQYRSHRDPETALRQRMCEIAATRVRYGYRKIRVLLLREGYQVSKNRLYRLYREEGLSLRYRPNRKRRAQMSRP
ARAKSTAANQAWSLDFVADQLSNGQRFRALTIIDVFTREALAIDVGQRLSASDVVRVLDELRSKRGAPRTLFCDNGSEFTSQVMDLWAYHHKVEIAFSRP
GKPTDNAFVESFNGTLRDECLNVHWFTSLADAREQIERWRVEYNESRPHRALDEVPPAEYVRQLGLQAQLTDQQNAED
VVDYLKSAYGVAERRACRLVAISRSVYQYRSHRDPETALRQRMCEIAATRVRYGYRKIRVLLLREGYQVSKNRLYRLYREEGLSLRYRPNRKRRAQMSRP
ARAKSTAANQAWSLDFVADQLSNGQRFRALTIIDVFTREALAIDVGQRLSASDVVRVLDELRSKRGAPRTLFCDNGSEFTSQVMDLWAYHHKVEIAFSRP
GKPTDNAFVESFNGTLRDECLNVHWFTSLADAREQIERWRVEYNESRPHRALDEVPPAEYVRQLGLQAQLTDQQNAED
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1124 bp | 374 aa | 31 | 1154 | + | Yes |
Chemistry : DDE
ORF sequence :
MKRKRFSVEQIVAVLKQAEAGMPVAELIRHVGISEQTFYRWKKVYAGLQTDQVRQFKQLQDENAQLKKVVAELTLDKAMLTDVLKKKVVKSSPRRHVVDY
LKSAYGVAERRACRLVAISRSVYQYRSHRDPETALRQRMCEIAATRVRYGYRKIRVLLLREGYQVSKNRLYRLYREEGLSLRYRPNRKRRAQMSRPARAK
STAANQAWSLDFVADQLSNGQRFRALTIIDVFTREALAIDVGQRLSASDVVRVLDELRSKRGAPRTLFCDNGSEFTSQVMDLWAYHHKVEIAFSRPGKPT
DNAFVESFNGTLRDECLNVHWFTSLADAREQIERWRVEYNESRPHRALDEVPPAEYVRQLGLQAQLTDQQNAED
LKSAYGVAERRACRLVAISRSVYQYRSHRDPETALRQRMCEIAATRVRYGYRKIRVLLLREGYQVSKNRLYRLYREEGLSLRYRPNRKRRAQMSRPARAK
STAANQAWSLDFVADQLSNGQRFRALTIIDVFTREALAIDVGQRLSASDVVRVLDELRSKRGAPRTLFCDNGSEFTSQVMDLWAYHHKVEIAFSRPGKPT
DNAFVESFNGTLRDECLNVHWFTSLADAREQIERWRVEYNESRPHRALDEVPPAEYVRQLGLQAQLTDQQNAED
Blast result :
Comments
ISBvi7 is 80% aa similar to ISBcen22. The third ORF is a putative ORFAB transposase reconstructed in silico by -1 frameshift. The terminal inverted repeat are not expected ends for an IS3 family members.
References
1] ISfinder submission (2015)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2005) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2005) Direct submission GenBank.