ISPa49
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa DSM1128 |
DNA section
IS Length : 1417 bp
Ends
IR Length : 13
IRL : aaatgtaATGGACGCCTCCCTCTTACATCCTTCCGGCTCCAGCCTCGAGG
IRR : ----tatATGGACGCCTCCCGTTTGCCAAGAACGTCTTCGGTGATGGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCGTGGAGG | CTACTGATGC | 0 | |
CGCACGGAGG | CTATTGATGG | 0 |
DNA sequence
AAATGTAATGGACGCCTCCCTCTTACATCCTTCCGGCTCCAGCCTCGAGGCGGATCAGGCCTAGAGGGCCGTGATACATCTGGAGCTCCGTAGCCCACCT
GGAGAGATCATCATGAGCCTTTCCCAAACCATCGTTGGCATCGATATAGCCAAGAGCGTCTTCCAGATTCACGAGGTAGACAAAGAAACAGGAGAAGTTA
CCAGCCGCCAGATTAAGCGCGCTCGTCTCCTGCAGCACTTCATCAATCGCGAGCCATGCTTCATCGGCATGGAGGCGTGTGGTGGGGCGCAGCATTGGGC
CCGCCAGTTTGTAGCCATGGGGCACACCGTGAAACTGCTCCCGGCTCAGTCGGTGCGCCCCTTCGCAGGCGGTAACAAGAATGACGTTGCAGATGCACGA
GCTATCTGGATAGCCGTTCAACAACCGGGAATCAAAGCCGTTGCAATCAAGACCGAAGCGCAGCAGGCCGTGCTCGCGCTCCATCGTATGCGGCAGCAAC
TGGTGAAATTTCGTACCGCACAGATCAATGCCTTGCGTGGGCTACTCGCTGAATACGGTGAGGTCATGCCCCTGGGCCGCGATGCAGTAGCCAAGGCGCT
GCCTTCGGTATTCGCCCGGCTCGTCGATCGCCTTCCGGGAGTCTTGATTGAATCACTGCGCGAGCAGTACACGCGAATCGCTCAATTGGACAAAGAAGTT
TCCAACATCGAGCGTCGGCTGCGGGAGTGGCACCGCGACGACGAAAGTTGCCGGCGCATAACGGCAATTCCCGGTGTGGGGTTGCTCACCGCTACCGCCA
CGGTTGCCGCCATGGGGGATCCAGGTGCATTCAGCTCTGGCCGCGAATTCGCTGCCTGGCTGGGCTTGGTTCCTCGGCAGACCGGAACAGGTGGCCGGGT
AAAACTCCTGGGTATCAGTAAGCGAGGCGATAGGTATCTACGCACGCTTCTTATCCATGGCGCTCGGTCAGTTCTGATGACGAGCAAAACACCGCCCGCA
TGGGCAGCGAATTTGGCTACGCGACGCCCACTGAATGTAGCCGTGGTGGCACTGGCCAACAAGATGGCTCGTACGTTGTGGGCCTTACTGGCTCACCAAC
GAGTGTTCCAACCTGAGTACGTAAGTCGACCCGCTTGAGCCGGTCACGCTTGCATTTATTTACTTCGATATAGGGAGGACAGCTGAAAGGTTGCGCAAGG
TACGTAACAAGTGATGGCAAACAGGTCGGACCGCGCCCCACCAAGTCTGAATCAGTAGTTGGACCTCGAGTCCATGGAGGAAATGAGACGTGGGTTGGCG
AATTCCATCAAGGCCAGCAGGCATCTGACCTGCGCCAAAGGCCGGATATAAAACTGCAGCCGTGTCCTGTCACACCATCACCGAAGACGTTCTTGGCAAA
CGGGAGGCGTCCATATA
GGAGAGATCATCATGAGCCTTTCCCAAACCATCGTTGGCATCGATATAGCCAAGAGCGTCTTCCAGATTCACGAGGTAGACAAAGAAACAGGAGAAGTTA
CCAGCCGCCAGATTAAGCGCGCTCGTCTCCTGCAGCACTTCATCAATCGCGAGCCATGCTTCATCGGCATGGAGGCGTGTGGTGGGGCGCAGCATTGGGC
CCGCCAGTTTGTAGCCATGGGGCACACCGTGAAACTGCTCCCGGCTCAGTCGGTGCGCCCCTTCGCAGGCGGTAACAAGAATGACGTTGCAGATGCACGA
GCTATCTGGATAGCCGTTCAACAACCGGGAATCAAAGCCGTTGCAATCAAGACCGAAGCGCAGCAGGCCGTGCTCGCGCTCCATCGTATGCGGCAGCAAC
TGGTGAAATTTCGTACCGCACAGATCAATGCCTTGCGTGGGCTACTCGCTGAATACGGTGAGGTCATGCCCCTGGGCCGCGATGCAGTAGCCAAGGCGCT
GCCTTCGGTATTCGCCCGGCTCGTCGATCGCCTTCCGGGAGTCTTGATTGAATCACTGCGCGAGCAGTACACGCGAATCGCTCAATTGGACAAAGAAGTT
TCCAACATCGAGCGTCGGCTGCGGGAGTGGCACCGCGACGACGAAAGTTGCCGGCGCATAACGGCAATTCCCGGTGTGGGGTTGCTCACCGCTACCGCCA
CGGTTGCCGCCATGGGGGATCCAGGTGCATTCAGCTCTGGCCGCGAATTCGCTGCCTGGCTGGGCTTGGTTCCTCGGCAGACCGGAACAGGTGGCCGGGT
AAAACTCCTGGGTATCAGTAAGCGAGGCGATAGGTATCTACGCACGCTTCTTATCCATGGCGCTCGGTCAGTTCTGATGACGAGCAAAACACCGCCCGCA
TGGGCAGCGAATTTGGCTACGCGACGCCCACTGAATGTAGCCGTGGTGGCACTGGCCAACAAGATGGCTCGTACGTTGTGGGCCTTACTGGCTCACCAAC
GAGTGTTCCAACCTGAGTACGTAAGTCGACCCGCTTGAGCCGGTCACGCTTGCATTTATTTACTTCGATATAGGGAGGACAGCTGAAAGGTTGCGCAAGG
TACGTAACAAGTGATGGCAAACAGGTCGGACCGCGCCCCACCAAGTCTGAATCAGTAGTTGGACCTCGAGTCCATGGAGGAAATGAGACGTGGGTTGGCG
AATTCCATCAAGGCCAGCAGGCATCTGACCTGCGCCAAAGGCCGGATATAAAACTGCAGCCGTGTCCTGTCACACCATCACCGAAGACGTTCTTGGCAAA
CGGGAGGCGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 113 | 1138 | + | No |
Chemistry : DEDD
ORF sequence :
MSLSQTIVGIDIAKSVFQIHEVDKETGEVTSRQIKRARLLQHFINREPCFIGMEACGGAQHWARQFVAMGHTVKLLPAQSVRPFAGGNKNDVADARAIWI
AVQQPGIKAVAIKTEAQQAVLALHRMRQQLVKFRTAQINALRGLLAEYGEVMPLGRDAVAKALPSVFARLVDRLPGVLIESLREQYTRIAQLDKEVSNIE
RRLREWHRDDESCRRITAIPGVGLLTATATVAAMGDPGAFSSGREFAAWLGLVPRQTGTGGRVKLLGISKRGDRYLRTLLIHGARSVLMTSKTPPAWAAN
LATRRPLNVAVVALANKMARTLWALLAHQRVFQPEYVSRPA
AVQQPGIKAVAIKTEAQQAVLALHRMRQQLVKFRTAQINALRGLLAEYGEVMPLGRDAVAKALPSVFARLVDRLPGVLIESLREQYTRIAQLDKEVSNIE
RRLREWHRDDESCRRITAIPGVGLLTATATVAAMGDPGAFSSGREFAAWLGLVPRQTGTGGRVKLLGISKRGDRYLRTLLIHGARSVLMTSKTPPAWAAN
LATRRPLNVAVVALANKMARTLWALLAHQRVFQPEYVSRPA
Blast result :
Comments
ISPa49 is 80% aa similar to IS884.
Insertion site determined by comparison with PAGI-2 island (AF440523). DSM1128 is one of 7 draft genomes comprising a comparative genomics project on PA7-like P. aeruginosa.
Insertion site determined by comparison with PAGI-2 island (AF440523). DSM1128 is one of 7 draft genomes comprising a comparative genomics project on PA7-like P. aeruginosa.
References