ISSis7

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001403 ND Sulfolobus islandicus
Sulfolobus islandicus Y.G.57.14
DNA section
IS Length : 1929 bp

Ends


IR Length : 0

IRL : GTCGTCAACAGTTTCCGATAAACCGTGAAGTTTATATACTTTGTATGTAA
IRR : GGTTTGGGCTTCATTGAATTTTCATGAATTTGTATCCAATCCTCAGCCCT

Insertion site


Left flankDirect repeatRight flankDR Length
CAATATAGCCCCACCTTGAT0

DNA sequence

GTCGTCAACAGTTTCCGATAAACCGTGAAGTTTATATACTTTGTATGTAAGTTTAACTACAATGCTGAAACCTAAGGAAGTGTGCCAAAAACTAGGAATA
TCATACCGCACACTACAGAGCTATGTTAAGAAGGGTTACATAAAACCCGTGATACTACAGAGTGGAAAATGGAGGTTTAAAGAAGAGGATGTCGAAAGAC
TCATGGGGATTGTTAGGAAGAGGAAAGTAGTATTATACGCTAGGGTATCATCAAACACACAGAAAGACGACTTAATAAACCAAGTAAAATACCTGGAGGA
GAACGTTAAAGAATACGACCAAGTAATAACTGACGTCGGATCCGGGTTGAACATGAAGAGGAAAGGATTCCTCAAGCTATTGAGAATGATACTAAACAAC
GAAGTATCGAAAGTTGTCATAGCCTACCCGGACAGACTAGTTAGGTTCGGTTTCGAGATAATTGAAGAAGTATGCAAAGCACACAACTGCGAGCTCGTGG
TATTAAATAAGGAGGACAAAACACCAGAGCAGGAACTAATCGAAGATTTGATCTCTATACTGGTATCATTTAGCGGAAAGTTGTATGGTATGAGGAGTCA
CAAATACGAAAAGGTGAAGAAATGTGTCGAAGAACTTAAGGCTTAATGACTTTCAACCACAAGAGGAATACGTTTACCTAACTTACTCCCTGAAGAATAA
TAAGAAGGTGAAGAGCAAGATATTACTAGAGAACTATAAACACCTACTACAGAAGGCTTTAGACTGGTTATGGGAGAGGACTAAGATAGAGAGGAAGGAG
GTCAAGAAGGGCAAGAAAATTTTCGCTAAGGTTAAAGTAACCTTGCCAAAGAAAAAGGAAGTTTACAAGGTGTTGAGGGATGAGTTAGAGAAGGTTAACA
ATCTAGCTTCACATTACGTTGACAAAGCAATAAATGATGCTTACTCAATCTTGGATAGTTGGAGGAGGAGGGCTGAAAAAGGACAAGCGTCATTAAGGAA
ACCTAGATTGAAGAAGGTTTACGTTAGGGTAAAGTCGACACTTAGAAAGGTTGAGGGTGAGAGTGTAAGGGTTACAGTAAGACTTTACGAATACGTCACC
TTCTCATGGTCTCACAAATGGTTTTCAAGGAGGGTTGAAGGGCTTGAGTTGGGTGAGCCAATAATTAAGGAGGATAGAGTTCACCTACCATTCCGTTACA
GATTGCCTTGGTTTTCACCCCTAGATTTCCTAGCAATTGATAGCAACCTTTACACATTGGACGCTTATGATGGGGAGAAGTTTGTTACATTTTCCTTGAA
GGAGTTGTACAGTCTAAAATTCGGTATGGAGTTGAAGAGGAGTAAAATACAATCTTTTGCTTCTAAACACGGTAGGAAGGGAAAGGTATTGTTGAGGAGG
TACTCCCACCGTGAAAGGAACCGTGTGCTGGATTATGTTCACAAGTTCGTGAATAAGTTGCTGGAGACGTATCCTCTCACTATGTTTGCTGTTGAGAAGT
TGAATAAGCAGTCAATGTTCCAAGACGCTGATGACAAGCTGTCTAAGAGGATTTCAAGGACTGTGTGGAGGACTATACACCGTGTGGTAAAGTACAAGGC
TCCCCTTTATGGTTCTTTCGTTAAGGAGGTGAGCCCACATCTCACTTCCAAGTCCTGCCCCAGATGTGGATGGGTTTCCCGAAAGGTCGGCAGGACTTTT
CACTGCGAGAGGTGCGGGTTCACTCTGGATAGGCAATTGAACGCATTTCTCAATATTTACCTCAAGATGTGCGGGTTCCCCTACATCCGTGATATTCCGC
GGGTGTGGGTCGGGGTTATCCCGCTAAAGGGGCGGAGGGGTATGAACGGGGCAATGCCCCGTGACTCTGTTGAAGCCCAAGGGCTGAGGATTGGATACAA
ATTCATGAAAATTCAATGAAGCCCAAACC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
585 bp194 aa62646+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MLKPKEVCQKLGISYRTLQSYVKKGYIKPVILQSGKWRFKEEDVERLMGIVRKRKVVLYARVSSNTQKDDLINQVKYLEENVKEYDQVITDVGSGLNMKR
KGFLKLLRMILNNEVSKVVIAYPDRLVRFGFEIIEEVCKAHNCELVVLNKEDKTPEQELIEDLISILVSFSGKLYGMRSHKYEKVKKCVEELKA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1296 bp431 aa6241919+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSKNLRLNDFQPQEEYVYLTYSLKNNKKVKSKILLENYKHLLQKALDWLWERTKIERKEVKKGKKIFAKVKVTLPKKKEVYKVLRDELEKVNNLASHYVD
KAINDAYSILDSWRRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRVTVRLYEYVTFSWSHKWFSRRVEGLELGEPIIKEDRVHLPFRYRLPWFSPL
DFLAIDSNLYTLDAYDGEKFVTFSLKELYSLKFGMELKRSKIQSFASKHGRKGKVLLRRYSHRERNRVLDYVHKFVNKLLETYPLTMFAVEKLNKQSMFQ
DADDKLSKRISRTVWRTIHRVVKYKAPLYGSFVKEVSPHLTSKSCPRCGWVSRKVGRTFHCERCGFTLDRQLNAFLNIYLKMCGFPYIRDIPRVWVGVIP
LKGRRGMNGAMPRDSVEAQGLRIGYKFMKIQ

 

Blast result :
Comments
ISSis7 is 99% aa (ORFA : the resolvase) and 96% aa (ORFB) similar to ISSis5.
References
1] ISfinder submission (2015)
2] Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610.