ISSis5

  • Family IS607
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012624 ND Sulfolobus islandicus
Sulfolobus islandicus Y.N.15.51
Sulfolobus islandicus Y.N.15.51 plasmid pYN01
DNA section
IS Length : 1935 bp

Ends


IR Length : 0

IRL : GTCGTCAACAGTTTCCGATAAACCGTGAAGTTTATATACTTTGTATGTAA
IRR : GGTTTGGGCTTCATTGAATTTTCATGAATTTGTATCCAATCCTCAGCCCT

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGTATGCCCCAACTCATT0
GATTTACGCCCCGTATAGCA0
GAGACTAGCCCCTACCAGCT0

DNA sequence

GTCGTCAACAGTTTCCGATAAACCGTGAAGTTTATATACTTTGTATGTAAGTTTAACTACAATGCTGAAACCTAAGGAAGTGTGCCAAAAACTAGGAATA
TCATACCGCACACTACAGAGCTATGTTAAGAAGGGTTACATAAAACCCGTGATACTACAGAGTGGAAAATGGAGGTTTAAAGAAGAGGATGTCGAAAGAC
TCATGGGGGTTGTTAGGAAGAGGAAAGTAGTATTATACGCTAGGGTATCATCAAACACACAGAAAGACGACTTAATAAACCAAGTTAAGTACCTGGAGGA
GAACGTTAAGGACTACGACCAAGTAATAACAGACATTGGTTCTGGGTTGAACATGAAGAGAAAAGGATTCCTCAAGCTATTGAGAATGATACTAAACAAC
GAAGTATCGAAAGTTGTCATAGCCTACCCAGACAGACTAGTTAGGTTCGGCTTTGAAATAATAGAGGAGGCATGCAAAGCACACAACTGCGAGCTCGTGG
TATTAAATAAGGAGGACAAAACACCAGAGCAGGAACTAATCGAAGATTTGATCTCTATACTGGTATCATTTAGCGGAAAGTTGTATGGTATGAGGAGCCA
TAAATATGAGAAGGTGAAGAAGTGTGTCGAAGAGCTTAAGGCTTAAATCATTCCAACCGGAGGAGGAATACGTTTACCTAACTTACTCCCTGAAGAATAA
TAAGAAGGTGAAGAGCAAGATATTACTAGAGAACTATAAACACCTACTACAGAAGGCTTTAGACTGGTTATGGGAGAGGACTAAGATAGAGAGGAAGGAG
GTCAAGAAGGGCAAGAAAATTTTCGCTAAGGTTAAAGTAACCTTGCCAAAGAAAAAGGAAGTTTACAAGGTGTTGAGGGATGAGTTAGAGAAGGTTAACA
ATCTAGCTTCACATTACGTTGACAAAGCAATAAATGATGCTTACTCAATCTTGAATAGTTGGAGGAGGAGGGCTGAAAAAGGACAAGCGTCATTAAGGAA
ACCTAGATTGAAGAAGGTTTACGTTAGGGTAAAGTCGACACTTAGAAAGGTTGAGGGTGAGAGTGTAAGGATTACAGTAAGACCTTACGAATACGTCACC
TTCTCATGGTCTCACAAATGGTTTTCAAGGAGGGTTGAAGGGCTTGAGTTGGGTGAGCCAGTAATAAAGGAGGATAAAGTTCACCTACCATTTCGTTATA
AGTTACCTTGGTTTACTCCCCTTGACTTTCTATCTATTGATAGTAACTTGTACACATTAGACGCTTACGATGGGGAGAAGTTCGTCACATTTTCTTTGAA
GGAGTTGTATAGTTTGAAGTTCGGTATGGAGTTGAAGAGGAGTAAAATACAGTCCTTCGCTTCTAAACACGGTAGGAAGGGGAAGGTATTGTTGAGGAAG
TACTCCCACCGTGAAAGGAACCGCGTGCTTGATTATGTTCACAAGTTTGTGAACAAACTGTTGGGAATGTATCCTCTCACTATGTTTGCTGTCGAGAAGT
TGAATAAGCAGTCAATGTTCCAAGACGCTGATGATAAGCTGTCTAAGAAGGTTTCAAGGACTGTATGGAGGACTATACACCGCGTGCTTAAATACAAGGC
TCCCCTTTATGGTTCTTTCGTTAAGGAGGTGAACCCACACCTCACATCTAAGTCCTGCCCCAGATGTGGATGGGTTTCCCGAAAGGTCGGCAGGATTTTC
AAGTGTGAGAGGTGTGGGTTCACTCTAGATAGGCAACTAAACGCATCTCTCAATATTTACCTCAAGATGTGCGGGTTTCCCCACCTCTTTCTTACTCCCA
CTGGGAGTAGGTGGATTGGGGTTATCCCGCTAAAGGGGCGGAGGGGTATGAACGGGGCGTTGCCCCGCGACTCTGGTGAAGCCCAAGGGCTGAGGATTGG
ATACAAATTCATGAAAATTCAATGAAGCCCAAACC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
585 bp194 aa62646+No
ORF function : Transposase
Chemistry : Serine

ORF sequence :

MLKPKEVCQKLGISYRTLQSYVKKGYIKPVILQSGKWRFKEEDVERLMGVVRKRKVVLYARVSSNTQKDDLINQVKYLEENVKDYDQVITDIGSGLNMKR
KGFLKLLRMILNNEVSKVVIAYPDRLVRFGFEIIEEACKAHNCELVVLNKEDKTPEQELIEDLISILVSFSGKLYGMRSHKYEKVKKCVEELKA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1302 bp433 aa6241925+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSKSLRLKSFQPEEEYVYLTYSLKNNKKVKSKILLENYKHLLQKALDWLWERTKIERKEVKKGKKIFAKVKVTLPKKKEVYKVLRDELEKVNNLASHYVD
KAINDAYSILNSWRRRAEKGQASLRKPRLKKVYVRVKSTLRKVEGESVRITVRPYEYVTFSWSHKWFSRRVEGLELGEPVIKEDKVHLPFRYKLPWFTPL
DFLSIDSNLYTLDAYDGEKFVTFSLKELYSLKFGMELKRSKIQSFASKHGRKGKVLLRKYSHRERNRVLDYVHKFVNKLLGMYPLTMFAVEKLNKQSMFQ
DADDKLSKKVSRTVWRTIHRVLKYKAPLYGSFVKEVNPHLTSKSCPRCGWVSRKVGRIFKCERCGFTLDRQLNASLNIYLKMCGFPHLFLTPTGSRWIGV
IPLKGRRGMNGALPRDSGEAQGLRIGYKFMKIQ

 

Blast result :
Comments
References
1] Romine, M.F. (2013) Direct submission.
2] Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610