TnShfr1
- Family Tn3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008345 | ND | Shewanella frigidimarina | Shewanella frigidimarina NCBM4000 |
DNA section
IS Length : 5131 bp
Ends
IR Length : 39/41
IRL : GGGGTCGTCTCAGAAAACGGAAAAAATCGTACGCTAAGACCGGTTTGGCT
IRR : GGGGTCACCTCAGAAAACGGAAAAAATCGTACGCTAAGACCCAGAGAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTTATTGCC | TATCA | AAACTACTAT | 5 |
DNA sequence
GGGGTCGTCTCAGAAAACGGAAAAAATCGTACGCTAAGACCGGTTTGGCTAGCCGGGTAGTAGGAGTCCCATTAGTCACGCCTGCCGGGCTGCGGCTTGG
TCTGGTTGAGAACTCGGTTCTTTGTGGCGATGATCCACGAAGTTGCACCCATCGACGCTGTGTTCACAGGCAACAATCTCCAGTTGCAGCGTCGTATGGA
AGATGCTGAATCGGTCAGCCAGCAACAACTTGAGGGTTTTGAGCAACTCGTCGGGCCCTATTTCCGGCGCATACACGATATGAGCGGTCATGCTGACCTT
GCCGCTCGTGAGCGCCCATACGTGCAAGTCATGCAGCCCTGTCACGCCTGGCACGGCCTGAACAGATGCCATCAAGGCTCCCATGTCAATGCCGTCTGGG
ACTCCCTCCAGCAAGACATTCAGGCTTTCCTTGAGTAGCAGCCAAGTTCGTGGCAGCACCCATAGCCCGATTGCCACGGCGACGACCGCATCTACCCACA
CCCAGCCGGTGAATCGGATGACCAGCGCAGCTCCGATCACGCCGATGGAGCCAATCATGTCGCTCCAGACCTCCAGATAAGCGCCTTTGACGTTGAGGCT
CTTGTCCTTGCCGCCCTGAAGCATACGCATGCTGATGAGGTTGACGATCAGACCCAGCACTGCTACCACCAGCATCCCGCTGGACTGAACCTGCGCTGGC
TCGCGCAAACGCTGCCAGCCCTCATACAGGATGTAGCCAGCGACGCCGAAGAGCAACAGGGCGTTGAATGCGGCCGCAAGGATTTCGAAGCGGTAGTAGC
CATAGGTGCGCTTGGCATCGGCTGGCCGTCTCGCCACCCGTACAGCCGCCAAGGCGATGGCCAGCGCCGCTGCATCCGTGAACATGTGCGCCGCATCTGA
GAGCAGGGCCAGGCTGTTGAAAACGATGCCTGCGGCGACTTCGGCCAGCAAGAAGCTCCCGGTCAGCGCCAGGGCGATCCAGAGCGATTTTTCATTGCGC
TCGCTGGGTAGGGCATGGGTGTGACCGGTGCTCATTTTCGTCCTTCTTCTGAGTTCATTTTTGTTCAGCGTGACCGGAAGCCGGCACCCAGCGATACAAC
GTCGGGATTGAGACCCCGAGGTTCTTGGCCACGTCCTTGGGAGCGATCCCGCTGGCGAGCAGCTTCTTGGCCGATTCAATCTTGCTTTTGGTCATCTTCG
GTTTGCGCCCTCCCTTGCGGCCTGACAGCCGGGCGACCGCCAATCCTGCTCGGGTCCGCTCCACCGTCAGCTCGCGCTCCATTTCGGCGAGGCTGGCCAT
GACGTGAAAGAAGAACCGTCCCGACGGCGTGCCGGTGTCGATGGCGTCGGTGAGACTCTTGAACTGGATGCTCTGCTTGTGCAACTCGCTGACCAGATCG
ACCAATTGCTTGACGCTGCGGCCCAGGCGATCCAGCTTCCAGACGACCAGCGTGTCTCCCTTGCGTAGCATTTCAAGCGCCTTGGCCAAGCCGGGGCGCT
CGGCTCTCGTGCCGCTTAATTTGTCCTCAAAGAGCTTTTGGCACCCGGCCTGGGTCAAGGCCTCCCGCTGTAGCTCCAGGTTCTGATCCTGCGTCGAGAC
GCGCGCATAGCCAACCAGCATGGCACGGTCAGACCGCTGCCTTGCCGCACTGAGCGCAAAACTTCGCACCCGGTTGCAGTGTGGTTCCACATTGCGCGCA
AGCCGAAGGAACCAACGAAGTCCCGCACTGCTGGCAGAAGCGAGCGCCTGGCGCGTTAGATGCCTTGCAGTTGGGGCAAGCAAGGCCGCCATTACCCCAC
CCGCCCGCTGGAGGCCCGCCGCTTCCGTACCCACCGCCACCACCGTGATGCCCACCACCGCTGTAACCACCACCGTGGTGGCCACCGAAAAGTCTGTCAA
AAATACCCATGAGTCTTTCTCCTTTCGTAAACACGTCAAAGCCACTTGGGGCAGCGGTTGGCTACATCCCTATTTCTCGAAACGCGTTGATATGATAAGA
ATTCAAGAATAAAGTTTCAAGAACTGTTTTCGAGAATCGCAACGCATTGATTTGCTGTACCGCGCCAGAGGGTTGAGCGGGATTGTCGCAAACCTACGTT
TTTGAGAAGAAGGAGACTGCATGCCCCGCCGTTCAATCCTCTCCGCCGCAGAGCGCGACAGTCTCTTGGCGTTGCCCGATACCCAAGACGAACTCATCCG
GCTCTACACGTTCAGCGAACCCGACCTGTCACTAATCCGCCAGCGGCGCGGTGACGCCAACCGCCTGGGTGTCGCGGTGCAATTATGCTTATTGCGCTTT
CCCGGTCAGGGCCTGCTGCCCGACGCTGCGGTGCCGATGCCCCTGCTGCAATGGATCGGACGGCAACTGCGCATCGATCCATCGTGCTGGCCACAGTATG
CAGAGAGGGAAGAAACCCGGCGCGAGCATCTGCTTGAGCTGCGTGCATATTTGGGCATGGAGCCGTTCGGCCTGGCGCACTATCGGCAGGCTGTCCATGC
CGCGACCGAGTTGGCCTTGCAAACCGACAAGGGCATCATGCTGGCCAACAGTGTTCTCGACGACCTGCGGCACCGACACGTCATCTTGCCGACGCTGGAT
GTTGTCGAGCGCGTCTGTGCCGAGGCGATCACCCGCGCCAACCGGCAAATCTACGAAACCTTGTCCGAACCGCTATCGGACGCGCATCGTCGCCGCCTTG
ACGATCTGCTCAAACGCCGGGACAACGGCAAAACGACCTGGCTGGCCTGGCTGCGCCAGTCACCCGTCAAGCCCAATTCGCGGCACATGCTCGAACACAT
CGAACGCCTCAAGGCATGGCAGGCGCTCGACCTGCCTTCCGGCGTCGAGCGGTCGGTGCACCAGAATCGCCTGCTCAAGATCGCCCGCGAGGGTGGCCAG
ATGACACCCGCCGACCTGGCCAAGTTCGAGGCGCAGCGGCGCTACGCCACCCTGGTCGCGCTCGCCATCGAGGGTATGCAGGTATGGCCACCGTCACCGA
TGAAATCATCGACCTGCATGATCGAATCCTGGGCAAGCTGTTCAACGCCGCCAAGAACAAGCATCAGCAGCAGTTCCAGGCATCCGGCAAGGCGATCAAC
GCCAAGGTGCGGCTGTTTGGGCGCATCGGTCAGGCGCTGATCGAGGCCAAGCAAGCGGGCCGCGATCCGTTCGCCGCAATCGAGGGCGTACTATCCTGGG
ATGCTTTCGCCGAAAATGTCACCGAAGCGCAGAAGCTCGCGCAGCCCGAGGACTTCGATTTCCTGCACCGCATCGGCGAGAGCTACGCCACGTTACGCCG
GTACGCGCCGGAATTCCTCGCCGTGCTCAAGCTGCGGGCTGCGCCCGCTGCCAAGGATGTGCTGGACGCCATCGAGGTGCTGCGCGGCATGAACAGCGAC
AACGCACGCAAGGTGCCTGCCGATGCGCCGACCGACTTCATCAAGCCGCGCTGGCAGAAGCTGGTGATGACCGATGCCGGCATCGACCGGCGCTACTACG
AGTTGTGCGCACTGTCGGAACTGAAGAACGCGCTGCGCTCCGGCGACATCTGGGTGCAAGGCTCACGCCAGTTCAAGGATTTCGAGGACTACCTGGTACC
GCCTGTGAAATTCGCCAGCCTCAAGCTGGCCAGCGAACTGCCGCTGGCTGTGGTCACCAACTGCGACCAGTACCTGCATGACCGGCTGACGCTGCTAGAA
ACACAGCTTGCGACCGTCAACCGCATGGCGGCGGCCAACGACCTGCCGGACGCCATCATCACCGAGTCTGGCCTGAAGATCACGCCTCTGGATGCGGCGG
TGCCTGACACCGCGCAGGCGCTGATCGACCAGACCGCGATGATCCTGCCGCACATCAAGATCACCGAACTGCTTATGGAAGTGGATGAATGGACGGGCTT
CACCCGCCACTTTACGCACCTGAAATCGGGCGACCTGGCCAAGGACAAGAACCTGCTGCTGACCACCATACTGGCCGACGCGATCAATCTCGGCCTGACC
AAGATGGCCGAGTCCTGTCCCGGCACAACGTATGCCAAGCTCGCCTGGCTACAAGCCTGGCATACCCGCGATGAAACCTATTCGACGGCGCTGGCCGAAT
TGGTGAACGCGCAGTTCCGGCATCCCTTCGCCGAGCATTGGGGTGACGGCACCACGTCATCGTCGGACGGCCAGAACTTCCGCACCGGCAGCAAGGCCGA
GAGCACCGGGCACATCAACCCGAAATATGGCAGCAGCCCAGGGCGGACGTTTTACACGCACATCTCCGACCAGTACGCGCCGTTCCACACCAAGGTCGTG
AACGTCGGCGTGCGCGACTCGACCTACGTGCTCGACGGCCTGCTGTACCACGAGTCCGACCTGCGCATCGAGGAGCACTACACCGACACGGCGGGCTTCA
CCGATCATGTCTTTGCCCTCATGCATCTGCTGGGCTTCCGCTTCGCGCCGCGCATCCGCGCCCTGGGCGACACCAAGCTGTTCATCCCTAAGGGTGAAGC
CAGTTACGACGCACTCAGACCGACGATTAGCAGCGACAAGTTGAACATCAAGGCTATTCGTGCCCATTGGGATGAAATCCTGCGCCTGGCTACCTCGATC
AAACAGGGCACGGTGACGGCCTCGCTGATGTTGCGCAAGCTCGGCAGCTACCCGCGCCAGAACGGCCTGGCCGTTGCGCTGCGCGAGCTGGGGCGCATCG
AGCGCACGCTGTTCATCTTGGACTGGCTGCAAAGCGTGGAACTACGCCGTCGTGTGCATGCCGGATTGAACAAGGGCGAAGCCCGCAATGCGCTGGCCAG
GGCGGTGTTCTTCAACCGGCTGGGCGAAATCCGCGACCGCAGTTTCGAGCAGCAGCGCTACCGGGCCAGTGGCCTCAACCTGGTGACGGCGGCCATCGTG
CTGTGGAACACGGTCTACCTGGAGCGCGCCGCGAATGCTTTGCGCGGCCACGGCCATGGTGTCGATGAAGGGCTGTTGCAGTACCTGTCGCCGCTGGGTT
GGGAGCATATCAACCTGACCGGCGATTACCTCTGGCGCAGTAGCTCCAAAGTAGGCGTGGGGAAATTCCGACCGCTACGTCCGCTCTCTGGGTCTTAGCG
TACGATTTTTTCCGTTTTCTGAGGTGACCCC
TCTGGTTGAGAACTCGGTTCTTTGTGGCGATGATCCACGAAGTTGCACCCATCGACGCTGTGTTCACAGGCAACAATCTCCAGTTGCAGCGTCGTATGGA
AGATGCTGAATCGGTCAGCCAGCAACAACTTGAGGGTTTTGAGCAACTCGTCGGGCCCTATTTCCGGCGCATACACGATATGAGCGGTCATGCTGACCTT
GCCGCTCGTGAGCGCCCATACGTGCAAGTCATGCAGCCCTGTCACGCCTGGCACGGCCTGAACAGATGCCATCAAGGCTCCCATGTCAATGCCGTCTGGG
ACTCCCTCCAGCAAGACATTCAGGCTTTCCTTGAGTAGCAGCCAAGTTCGTGGCAGCACCCATAGCCCGATTGCCACGGCGACGACCGCATCTACCCACA
CCCAGCCGGTGAATCGGATGACCAGCGCAGCTCCGATCACGCCGATGGAGCCAATCATGTCGCTCCAGACCTCCAGATAAGCGCCTTTGACGTTGAGGCT
CTTGTCCTTGCCGCCCTGAAGCATACGCATGCTGATGAGGTTGACGATCAGACCCAGCACTGCTACCACCAGCATCCCGCTGGACTGAACCTGCGCTGGC
TCGCGCAAACGCTGCCAGCCCTCATACAGGATGTAGCCAGCGACGCCGAAGAGCAACAGGGCGTTGAATGCGGCCGCAAGGATTTCGAAGCGGTAGTAGC
CATAGGTGCGCTTGGCATCGGCTGGCCGTCTCGCCACCCGTACAGCCGCCAAGGCGATGGCCAGCGCCGCTGCATCCGTGAACATGTGCGCCGCATCTGA
GAGCAGGGCCAGGCTGTTGAAAACGATGCCTGCGGCGACTTCGGCCAGCAAGAAGCTCCCGGTCAGCGCCAGGGCGATCCAGAGCGATTTTTCATTGCGC
TCGCTGGGTAGGGCATGGGTGTGACCGGTGCTCATTTTCGTCCTTCTTCTGAGTTCATTTTTGTTCAGCGTGACCGGAAGCCGGCACCCAGCGATACAAC
GTCGGGATTGAGACCCCGAGGTTCTTGGCCACGTCCTTGGGAGCGATCCCGCTGGCGAGCAGCTTCTTGGCCGATTCAATCTTGCTTTTGGTCATCTTCG
GTTTGCGCCCTCCCTTGCGGCCTGACAGCCGGGCGACCGCCAATCCTGCTCGGGTCCGCTCCACCGTCAGCTCGCGCTCCATTTCGGCGAGGCTGGCCAT
GACGTGAAAGAAGAACCGTCCCGACGGCGTGCCGGTGTCGATGGCGTCGGTGAGACTCTTGAACTGGATGCTCTGCTTGTGCAACTCGCTGACCAGATCG
ACCAATTGCTTGACGCTGCGGCCCAGGCGATCCAGCTTCCAGACGACCAGCGTGTCTCCCTTGCGTAGCATTTCAAGCGCCTTGGCCAAGCCGGGGCGCT
CGGCTCTCGTGCCGCTTAATTTGTCCTCAAAGAGCTTTTGGCACCCGGCCTGGGTCAAGGCCTCCCGCTGTAGCTCCAGGTTCTGATCCTGCGTCGAGAC
GCGCGCATAGCCAACCAGCATGGCACGGTCAGACCGCTGCCTTGCCGCACTGAGCGCAAAACTTCGCACCCGGTTGCAGTGTGGTTCCACATTGCGCGCA
AGCCGAAGGAACCAACGAAGTCCCGCACTGCTGGCAGAAGCGAGCGCCTGGCGCGTTAGATGCCTTGCAGTTGGGGCAAGCAAGGCCGCCATTACCCCAC
CCGCCCGCTGGAGGCCCGCCGCTTCCGTACCCACCGCCACCACCGTGATGCCCACCACCGCTGTAACCACCACCGTGGTGGCCACCGAAAAGTCTGTCAA
AAATACCCATGAGTCTTTCTCCTTTCGTAAACACGTCAAAGCCACTTGGGGCAGCGGTTGGCTACATCCCTATTTCTCGAAACGCGTTGATATGATAAGA
ATTCAAGAATAAAGTTTCAAGAACTGTTTTCGAGAATCGCAACGCATTGATTTGCTGTACCGCGCCAGAGGGTTGAGCGGGATTGTCGCAAACCTACGTT
TTTGAGAAGAAGGAGACTGCATGCCCCGCCGTTCAATCCTCTCCGCCGCAGAGCGCGACAGTCTCTTGGCGTTGCCCGATACCCAAGACGAACTCATCCG
GCTCTACACGTTCAGCGAACCCGACCTGTCACTAATCCGCCAGCGGCGCGGTGACGCCAACCGCCTGGGTGTCGCGGTGCAATTATGCTTATTGCGCTTT
CCCGGTCAGGGCCTGCTGCCCGACGCTGCGGTGCCGATGCCCCTGCTGCAATGGATCGGACGGCAACTGCGCATCGATCCATCGTGCTGGCCACAGTATG
CAGAGAGGGAAGAAACCCGGCGCGAGCATCTGCTTGAGCTGCGTGCATATTTGGGCATGGAGCCGTTCGGCCTGGCGCACTATCGGCAGGCTGTCCATGC
CGCGACCGAGTTGGCCTTGCAAACCGACAAGGGCATCATGCTGGCCAACAGTGTTCTCGACGACCTGCGGCACCGACACGTCATCTTGCCGACGCTGGAT
GTTGTCGAGCGCGTCTGTGCCGAGGCGATCACCCGCGCCAACCGGCAAATCTACGAAACCTTGTCCGAACCGCTATCGGACGCGCATCGTCGCCGCCTTG
ACGATCTGCTCAAACGCCGGGACAACGGCAAAACGACCTGGCTGGCCTGGCTGCGCCAGTCACCCGTCAAGCCCAATTCGCGGCACATGCTCGAACACAT
CGAACGCCTCAAGGCATGGCAGGCGCTCGACCTGCCTTCCGGCGTCGAGCGGTCGGTGCACCAGAATCGCCTGCTCAAGATCGCCCGCGAGGGTGGCCAG
ATGACACCCGCCGACCTGGCCAAGTTCGAGGCGCAGCGGCGCTACGCCACCCTGGTCGCGCTCGCCATCGAGGGTATGCAGGTATGGCCACCGTCACCGA
TGAAATCATCGACCTGCATGATCGAATCCTGGGCAAGCTGTTCAACGCCGCCAAGAACAAGCATCAGCAGCAGTTCCAGGCATCCGGCAAGGCGATCAAC
GCCAAGGTGCGGCTGTTTGGGCGCATCGGTCAGGCGCTGATCGAGGCCAAGCAAGCGGGCCGCGATCCGTTCGCCGCAATCGAGGGCGTACTATCCTGGG
ATGCTTTCGCCGAAAATGTCACCGAAGCGCAGAAGCTCGCGCAGCCCGAGGACTTCGATTTCCTGCACCGCATCGGCGAGAGCTACGCCACGTTACGCCG
GTACGCGCCGGAATTCCTCGCCGTGCTCAAGCTGCGGGCTGCGCCCGCTGCCAAGGATGTGCTGGACGCCATCGAGGTGCTGCGCGGCATGAACAGCGAC
AACGCACGCAAGGTGCCTGCCGATGCGCCGACCGACTTCATCAAGCCGCGCTGGCAGAAGCTGGTGATGACCGATGCCGGCATCGACCGGCGCTACTACG
AGTTGTGCGCACTGTCGGAACTGAAGAACGCGCTGCGCTCCGGCGACATCTGGGTGCAAGGCTCACGCCAGTTCAAGGATTTCGAGGACTACCTGGTACC
GCCTGTGAAATTCGCCAGCCTCAAGCTGGCCAGCGAACTGCCGCTGGCTGTGGTCACCAACTGCGACCAGTACCTGCATGACCGGCTGACGCTGCTAGAA
ACACAGCTTGCGACCGTCAACCGCATGGCGGCGGCCAACGACCTGCCGGACGCCATCATCACCGAGTCTGGCCTGAAGATCACGCCTCTGGATGCGGCGG
TGCCTGACACCGCGCAGGCGCTGATCGACCAGACCGCGATGATCCTGCCGCACATCAAGATCACCGAACTGCTTATGGAAGTGGATGAATGGACGGGCTT
CACCCGCCACTTTACGCACCTGAAATCGGGCGACCTGGCCAAGGACAAGAACCTGCTGCTGACCACCATACTGGCCGACGCGATCAATCTCGGCCTGACC
AAGATGGCCGAGTCCTGTCCCGGCACAACGTATGCCAAGCTCGCCTGGCTACAAGCCTGGCATACCCGCGATGAAACCTATTCGACGGCGCTGGCCGAAT
TGGTGAACGCGCAGTTCCGGCATCCCTTCGCCGAGCATTGGGGTGACGGCACCACGTCATCGTCGGACGGCCAGAACTTCCGCACCGGCAGCAAGGCCGA
GAGCACCGGGCACATCAACCCGAAATATGGCAGCAGCCCAGGGCGGACGTTTTACACGCACATCTCCGACCAGTACGCGCCGTTCCACACCAAGGTCGTG
AACGTCGGCGTGCGCGACTCGACCTACGTGCTCGACGGCCTGCTGTACCACGAGTCCGACCTGCGCATCGAGGAGCACTACACCGACACGGCGGGCTTCA
CCGATCATGTCTTTGCCCTCATGCATCTGCTGGGCTTCCGCTTCGCGCCGCGCATCCGCGCCCTGGGCGACACCAAGCTGTTCATCCCTAAGGGTGAAGC
CAGTTACGACGCACTCAGACCGACGATTAGCAGCGACAAGTTGAACATCAAGGCTATTCGTGCCCATTGGGATGAAATCCTGCGCCTGGCTACCTCGATC
AAACAGGGCACGGTGACGGCCTCGCTGATGTTGCGCAAGCTCGGCAGCTACCCGCGCCAGAACGGCCTGGCCGTTGCGCTGCGCGAGCTGGGGCGCATCG
AGCGCACGCTGTTCATCTTGGACTGGCTGCAAAGCGTGGAACTACGCCGTCGTGTGCATGCCGGATTGAACAAGGGCGAAGCCCGCAATGCGCTGGCCAG
GGCGGTGTTCTTCAACCGGCTGGGCGAAATCCGCGACCGCAGTTTCGAGCAGCAGCGCTACCGGGCCAGTGGCCTCAACCTGGTGACGGCGGCCATCGTG
CTGTGGAACACGGTCTACCTGGAGCGCGCCGCGAATGCTTTGCGCGGCCACGGCCATGGTGTCGATGAAGGGCTGTTGCAGTACCTGTCGCCGCTGGGTT
GGGAGCATATCAACCTGACCGGCGATTACCTCTGGCGCAGTAGCTCCAAAGTAGGCGTGGGGAAATTCCGACCGCTACGTCCGCTCTCTGGGTCTTAGCG
TACGATTTTTTCCGTTTTCTGAGGTGACCCC
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 1035 | 76 | - | No |
Annotation : cation efflux pumpDescription :
ORF sequence :
MSTGHTHALPSERNEKSLWIALALTGSFLLAEVAAGIVFNSLALLSDAAHMFTDAAALAIALAAVRVARRPADAKRTYGYYRFEILAAAFNALLLFGVAG
YILYEGWQRLREPAQVQSSGMLVVAVLGLIVNLISMRMLQGGKDKSLNVKGAYLEVWSDMIGSIGVIGAALVIRFTGWVWVDAVVAVAIGLWVLPRTWLL
LKESLNVLLEGVPDGIDMGALMASVQAVPGVTGLHDLHVWALTSGKVSMTAHIVYAPEIGPDELLKTLKLLLADRFSIFHTTLQLEIVACEHSVDGCNFV
DHRHKEPSSQPDQAAARQA
YILYEGWQRLREPAQVQSSGMLVVAVLGLIVNLISMRMLQGGKDKSLNVKGAYLEVWSDMIGSIGVIGAALVIRFTGWVWVDAVVAVAIGLWVLPRTWLL
LKESLNVLLEGVPDGIDMGALMASVQAVPGVTGLHDLHVWALTSGKVSMTAHIVYAPEIGPDELLKTLKLLLADRFSIFHTTLQLEIVACEHSVDGCNFV
DHRHKEPSSQPDQAAARQA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
567 bp | 188 aa | 1621 | 1055 | - | No |
AG : Tn3 resolvase
ORF sequence :
MLVGYARVSTQDQNLELQREALTQAGCQKLFEDKLSGTRAERPGLAKALEMLRKGDTLVVWKLDRLGRSVKQLVDLVSELHKQSIQFKSLTDAIDTGTPS
GRFFFHVMASLAEMERELTVERTRAGLAVARLSGRKGGRKPKMTKSKIESAKKLLASGIAPKDVAKNLGVSIPTLYRWVPASGHAEQK
GRFFFHVMASLAEMERELTVERTRAGLAVARLSGRKGGRKPKMTKSKIESAKKLLASGIAPKDVAKNLGVSIPTLYRWVPASGHAEQK
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
282 bp | 93 aa | 1910 | 1629 | - | No |
Annotation : conserved hypothetical proteinDescription :
ORF sequence :
MGIFDRLFGGHHGGGYSGGGHHGGGGGYGSGGPPAGGWGNGGLACPNCKASNAPGARFCQQCGTSLVPSACAQCGTTLQPGAKFCAQCGKAAV
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2978 bp | 989 aa | 2121 | 5098 | + | No |
Chemistry : DDE
ORF sequence :
MPRRSILSAAERDSLLALPDTQDELIRLYTFSEPDLSLIRQRRGDANRLGVAVQLCLLRFPGQGLLPDAAVPMPLLQWIGRQLRIDPSCWPQYAEREETR
REHLLELRAYLGMEPFGLAHYRQAVHAATELALQTDKGIMLANSVLDDLRHRHVILPTLDVVERVCAEAITRANRQIYETLSEPLSDAHRRRLDDLLKRR
DNGKTTWLAWLRQSPVKPNSRHMLEHIERLKAWQALDLPSGVERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEIIDLHDRI
LGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEGVLSWDAFAENVTEAQKLAQPEDFDFLHRIGESYATLRRYAPEFLAVL
KLRAAPAAKDVLDAIEVLRGMNSDNARKVPADAPTDFIKPRWQKLVMTDAGIDRRYYELCALSELKNALRSGDIWVQGSRQFKDFEDYLVPPVKFASLKL
ASELPLAVVTNCDQYLHDRLTLLETQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHIKITELLMEVDEWTGFTRHFTHLKS
GDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAEHWGDGTTSSSDGQNFRTGSKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRALGDTKLFIPKGEASYDALRPTI
SSDKLNIKAIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGE
IRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAANALRGHGHGVDEGLLQYLSPLGWEHINLTGDYLWRSSSKVGVGKFRPLRPLSGS
REHLLELRAYLGMEPFGLAHYRQAVHAATELALQTDKGIMLANSVLDDLRHRHVILPTLDVVERVCAEAITRANRQIYETLSEPLSDAHRRRLDDLLKRR
DNGKTTWLAWLRQSPVKPNSRHMLEHIERLKAWQALDLPSGVERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEIIDLHDRI
LGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEGVLSWDAFAENVTEAQKLAQPEDFDFLHRIGESYATLRRYAPEFLAVL
KLRAAPAAKDVLDAIEVLRGMNSDNARKVPADAPTDFIKPRWQKLVMTDAGIDRRYYELCALSELKNALRSGDIWVQGSRQFKDFEDYLVPPVKFASLKL
ASELPLAVVTNCDQYLHDRLTLLETQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHIKITELLMEVDEWTGFTRHFTHLKS
GDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAEHWGDGTTSSSDGQNFRTGSKAESTGHINPKY
GSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRALGDTKLFIPKGEASYDALRPTI
SSDKLNIKAIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGE
IRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAANALRGHGHGVDEGLLQYLSPLGWEHINLTGDYLWRSSSKVGVGKFRPLRPLSGS
Blast result :
Comments
A single copy of TnShfr1 is encoded by Shewanella frigidimarina. This is a transposon and encodes the transposase (ORF4) , resolvase (ORF2), a cation efflux pump (ORF1), and a small conserved hypothetical protein (ORF3).
The TnShfr1 transposase is 92% aa similar to TnSod9.
The TnShfr1 transposase is 92% aa similar to TnSod9.
References
1] Romine, M. F. (2008) Direct submission