ISHvo22

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001955 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV4
DNA section
IS Length : 1398 bp

Ends


IR Length : 15/16

IRL : CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCAGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCCTCGCCTAGCTGTCTCTGAAGCCTGAATTCT

Insertion site


Left flankDirect repeatRight flankDR Length
CACCCGAACTATACTTGGTACAAAA5

DNA sequence

CAGTACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCAGAAGGTGTGTCTAATACCAAGCAAGCAGACAGTGAAATCCACGAGGACCAGCTCCTTAA
CTTCCTCGTCAACCGACTTGACGAGGAAGTTTCTCTGAATCTCGCCAACAACGCTAAAATCGATGCAGAGAACATCTACGAGGTCCTCGTCGGTGCATGC
ACCGACGGGACCTCCGTCTCCACGCTCTGCGAAAACAGTGAAGACGCGCCTCCCGCAAACACGGTCCTCTACCATCTCCGAACGAAGTTTGAACTGGACC
AACTCCAACGAGTTGGCAACACGCTCCTCCAGAAAGACGTTCTCGACGTCCTCCCCAAGCAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
TGGAGACGAAGACGACACCGACGGTCTCTATCATTCCCAAGCGAAGCGTGGAACCACCGCGTTCCACGCCTACGCGACACTCTACGCGCGCGTGAAGAAC
AAACGATACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCTGGGTTTCTCGGTATCCTCGACGGCCTTGACCTCAACG
TCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGCTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTGGGG
ACAATCAATCAAGCAAGAACTCTCGGAAGGCTGGAGTCGCGTGATTCAGCACAGTCTGACGGCGAGACTCGACGGTCACAGCTGGACCGTCGAGTTCCCC
GTCTACATCGACTGTACCTACCAGAACGGACGGTACGACGAACATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGAG
ACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAGGCAAGCTATCGACTCTCTGAACAAAGTATCGCGACGACCTCGACACAAAATCCGGTTGTACG
GCTGCTGTACGTCGTGGTGAGCTTGCTGTTACAGAACGTGTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
CAGTGGCCATTCAAGGAGTTCATCAACATGATCCGACGGGCAGCGTGGACGGCCCTCGCGACGCGTCGGGCCGTCCCCGCGAACCGGCCACCGGACGACC
GGTTCCACCGGTAACTCCCGACCGGGCTAGCCAACGGTGGGAGTGGCGACGCTGTCGCGTCGGCGGCAGCCGCCGCCGACAGCGACGGCTCTCCGCCGAT
CCGTCCATGATTCTGTCGTCGAGACCGCCAATGCAACCGCTCGGCCACAGAATTCAGGCTTCAGAGACAGCTAGGCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa481214+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNTKQADSEIHEDQLLNFLVNRLDEEVSLNLANNAKIDAENIYEVLVGACTDGTSVSTLCENSEDAPPANTVLYHLRTKFELDQLQRVGNTLLQKDVLD
VLPKQVEVCADLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAGFLGILDGLDLNVKAVYLDREFYDSKCL
TLLQAHNHAYVMPIVRWGQSIKQELSEGWSRVIQHSLTARLDGHSWTVEFPVYIDCTYQNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEASY
RLSEQSIATTSTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWQWPFKEFINMIRRAAWTALATRRAVPANRPPDDRFHR

 

Blast result :
Comments
ISHvo22 is 96% aa similar to ISH51.
IS_pep_1 is HVO_A0349.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605