ISHvo21
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001957 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV1 |
DNA section
IS Length : 1402 bp
Ends
IR Length : 14/16
IRL : CAGCACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGGAGATGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTCATCAAG | ATAAT | AGATTACCTC | 5 |
DNA sequence
CAGCACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGGAGATGTGTCCAAACAACAGCAGCAAGCAGACAGTGAAATTCACGAGGACCAGCTCCT
TAACTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCC
TGCGCCGACGGGACCTCGGTCTCAACGCTCTGTGAGAGAAGCGAAGATGCACCACACGAAAACTCGGTTCTCTACCATCTCCGCACCAAATTTGACCTTG
AGACGCTCGAACAGGTTGGAAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTTCCCCAGCAGGTGGAGGTCGTTTCGGACCTCCACCTGCGGCCCTA
CTACGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTCTACGCGCGTGTGAAG
AACAAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCAGAGTTTCTTGGTATTCTCGACGGCCTTGACCTCG
GTGTCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTG
GGGACGGACGATCAAGCGAGAACTCTCGGAAGGGTGGAGTCGCGTGATTCAGCACGACCTGACGGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTT
CCCGTCTACATCGACTGTACCTACCTGAACGGGCGGTACGACGAGCATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCTTTCATCGACTCACCGC
GAGACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAAGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGT
ACGGCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTCTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTC
TGGCAGTGGTCGTTCAAGGAGTTCATCAACATGATTCGACGGGCAGCGTGGACGGTCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACG
ACCGGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCAC
CGATTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTAC
TG
TAACTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCC
TGCGCCGACGGGACCTCGGTCTCAACGCTCTGTGAGAGAAGCGAAGATGCACCACACGAAAACTCGGTTCTCTACCATCTCCGCACCAAATTTGACCTTG
AGACGCTCGAACAGGTTGGAAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTTCCCCAGCAGGTGGAGGTCGTTTCGGACCTCCACCTGCGGCCCTA
CTACGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTCTACGCGCGTGTGAAG
AACAAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCAGAGTTTCTTGGTATTCTCGACGGCCTTGACCTCG
GTGTCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTG
GGGACGGACGATCAAGCGAGAACTCTCGGAAGGGTGGAGTCGCGTGATTCAGCACGACCTGACGGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTT
CCCGTCTACATCGACTGTACCTACCTGAACGGGCGGTACGACGAGCATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCTTTCATCGACTCACCGC
GAGACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAAGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGT
ACGGCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTCTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTC
TGGCAGTGGTCGTTCAAGGAGTTCATCAACATGATTCGACGGGCAGCGTGGACGGTCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACG
ACCGGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCAC
CGATTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTAC
TG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 48 | 1217 | + | No |
Chemistry : DDE
ORF sequence :
MSKQQQQADSEIHEDQLLNFLVNSLDEEVALSLAENAELDAEDIYEVLVGACADGTSVSTLCERSEDAPHENSVLYHLRTKFDLETLEQVGNTLLQKDVL
DVLPQQVEVVSDLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKC
LTLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHDLTAKLDGHSWTVEFPVYIDCTYLNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEAS
YRLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWQWSFKEFINMIRRAAWTVLAVRRAVPANRPPDDRFSR
DVLPQQVEVVSDLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKC
LTLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHDLTAKLDGHSWTVEFPVYIDCTYLNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEAS
YRLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWQWSFKEFINMIRRAAWTVLAVRRAVPANRPPDDRFSR
Blast result :
Comments
ISHvo21 is 98% aa similar to ISH51, and shows 93% sequence identity to ISH51.
IS_pep_1 is HVO_C0037.
IS_pep_1 is HVO_C0037.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605