ISHvo21

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001957 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV1
DNA section
IS Length : 1402 bp

Ends


IR Length : 14/16

IRL : CAGCACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGGAGATGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGAAGCCTGAGTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
GCTCATCAAGATAATAGATTACCTC5

DNA sequence

CAGCACATCACAAAGCCGGTTAGTTGAGACGTCTGCTTGCTGGAGATGTGTCCAAACAACAGCAGCAAGCAGACAGTGAAATTCACGAGGACCAGCTCCT
TAACTTCCTCGTCAACTCCCTTGACGAGGAAGTTGCTCTCTCACTCGCTGAAAACGCTGAACTCGATGCTGAAGACATCTACGAGGTCCTCGTCGGCGCC
TGCGCCGACGGGACCTCGGTCTCAACGCTCTGTGAGAGAAGCGAAGATGCACCACACGAAAACTCGGTTCTCTACCATCTCCGCACCAAATTTGACCTTG
AGACGCTCGAACAGGTTGGAAACACGCTCCTCCAGAAGGACGTTCTCGACGTCCTTCCCCAGCAGGTGGAGGTCGTTTCGGACCTCCACCTGCGGCCCTA
CTACGGCGACGAAGACGATACAGACGGCCTGTATCACTCACAAGCGAAGCGTGGAACCACCGCGTTCCACGCGTACGCGACACTCTACGCGCGTGTGAAG
AACAAACGCTACACGCTGGCGGTGCGCCGTCTCGAAGACGGCGACACCGCCAGCAGCGTCCTCGCAGAGTTTCTTGGTATTCTCGACGGCCTTGACCTCG
GTGTCAAGGCCGTCTATCTTGACCGCGAATTCTACGACAGCAAGTGTTTGACGCTGCTTCAGGCGCACAACCACGCGTACGTCATGCCGATCGTCCGCTG
GGGACGGACGATCAAGCGAGAACTCTCGGAAGGGTGGAGTCGCGTGATTCAGCACGACCTGACGGCGAAACTCGACGGTCACAGCTGGACCGTCGAGTTT
CCCGTCTACATCGACTGTACCTACCTGAACGGGCGGTACGACGAGCATGGGGTGGCGCGTCACGGCTACGCCGCTGACGCGCCTTTCATCGACTCACCGC
GAGACGCTCGATACCACTACGCGAAACGCTTCGGTATCGAAGCGAGCTACCGACTCTCCGAGCAAACGATTGCGACGACTACGACACAGAATCCGGTCGT
ACGGCTGTTGTACGTCGTGGTGAGTTTGCTGTTACAGAACGTCTGGCGGTATCTGCACTGGGAGTACGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTC
TGGCAGTGGTCGTTCAAGGAGTTCATCAACATGATTCGACGGGCAGCGTGGACGGTCCTCGCGGTGCGTCGGGCCGTCCCCGCGAACCGGCCACCAGACG
ACCGGTTTAGCCGGTAACTCTTGACCGGGCTAGCCAGCGGTGTGAGTGGCGACGCTGTCGCGTCAGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCAC
CGATTCGTCCATGATTCTCCCGTCGAGACCGTCAATGCAACCGCTCCGACACAGAACTCAGGCTTCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTAC
TG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa481217+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKQQQQADSEIHEDQLLNFLVNSLDEEVALSLAENAELDAEDIYEVLVGACADGTSVSTLCERSEDAPHENSVLYHLRTKFDLETLEQVGNTLLQKDVL
DVLPQQVEVVSDLHLRPYYGDEDDTDGLYHSQAKRGTTAFHAYATLYARVKNKRYTLAVRRLEDGDTASSVLAEFLGILDGLDLGVKAVYLDREFYDSKC
LTLLQAHNHAYVMPIVRWGRTIKRELSEGWSRVIQHDLTAKLDGHSWTVEFPVYIDCTYLNGRYDEHGVARHGYAADAPFIDSPRDARYHYAKRFGIEAS
YRLSEQTIATTTTQNPVVRLLYVVVSLLLQNVWRYLHWEYVATPRRGGRRLWQWSFKEFINMIRRAAWTVLAVRRAVPANRPPDDRFSR

 

Blast result :
Comments
ISHvo21 is 98% aa similar to ISH51, and shows 93% sequence identity to ISH51.
IS_pep_1 is HVO_C0037.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605