ISHtu3

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001861 ND Haloterrigena turkmenica
Haloterrigena turkmenica plasmid pHTUR01
DNA section
IS Length : 1471 bp

Ends


Left end : GTGATGATCAGGCGCAAAACCTCGCGCTTTAGCGCGGGGATACGCGCCGTCACTTGATGACGCAACCCACCGACAACAGCAGTGCTGGATGTTCTATTCC II struct. : Yes
Right end : CAAACCTCGGGGCATTTCGTACCGAGCGAACAGGTGGATTGCAAACCGTAATATCCCAACGCTCGGGAATCCTCGCTCTTTAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGATACGGACACTTATCGATCGATCGCGtcaa

DNA sequence

GTGATGATCAGGCGCAAAACCTCGCGCTTTAGCGCGGGGATACGCGCCGTCACTTGATGACGCAACCCACCGACAACAGCAGTGCTGGATGTTCTATTCC
TAATCATTATCTTTAATATGTAGGATTCTATAAGTCCTTATGAACACAGTTCGATGCTGGAGACAACCCGCACCTATCGAGCGAAAATCGGTAACCACTC
CCAAGTGAGTGACGACCTCGATAACTGCGGGCACTCAGCATCGAAACTGTGGAACGTCGCCCGCTACCACGCCCAACAAGAATGGGATGATACCGGCGAG
ATACCGTCTGAAGCCGACCTCAAGCGTGAGCTAAAAGACCACGAACGATACAATGACTTACATTCTCAGTCAAGTCAGCGAGTTCTAGAAGAGCTTGCTG
AGTCGTTCAACGGCTGGTTCAAAAAGCGCAAGAACGGCGATACAGACGCGAATCCACCCGGCTACCGAAAACGAGGCGACAACCACCCACGCTCCACCGT
GACGTGGAAACAAAACGGCATCAAACACGATTCCAAGCACAACAAACTCCGCCTGAGCAAAGGCTTCAACCTCAAACAGCACCGGTCGGACTTCATCCTC
GTCGAATACGAAACCCGACCAGACGTAACCGTGGAGAACATCCAGCAGGTCAGGGTCGTGTGGAACGGCGACCAGTGGGAACTCCACCTCGTCTGCAAAG
TCGAAATCCCCGTTGAGGACGCCCCCGGTGACAACACCGCTGGTATCGACCTCGGAATCAAGAACTACCTCGCCATCGCCTACGACGATGGAAACGCCGA
GTTGTATCCGGGGAACGTGCTGAAACAGGACAAGCACTACTTCACGCGAGACGAGTACGACACTGAAGGCGAGAACGGCCCGTCACAACGCGCGCTTCGC
GCTCGGCAGAAGTTGTCTCGGCGCAAAGACCACTTCCTGCACGCGCTCGCTAAGCACATCGTTGAGCGATGTATCGACCACAAGGTCGGACGCATCGCTA
TCGGTGATTTAAGCGAGATTCGTGAGGACGAGAACGGTGAGTCTCGAAACTGGGGCAAACGTGGGAACAAGAAACTCCACGGGTGGGAGTTTGACCGTTT
CACCACGTTGCTCGAATACAAGGCGGAGGAACACGGTATTCTCGTTGACCGCACGAGCGAGCGAGATACGTCGAAGACGTGTTCGTGTTGCGGTCGGAAG
CGAGACGCGAACAGGGTGGAGCGTGGCCTGTACGTCTGTGAATCGTGTGGCGTAGTGATGAATGCAGACGTGAATGGTGCAGTGAATATTCGCAGAAAGA
TAACTCAGAATCCTCCAACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCGGGGCATTTCGTACCGAGCGA
ACAGGTGGATTGCAAACCGTAATATCCCAACGCTCGGGAATCCTCGCTCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1269 bp422 aa1541422+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYRAKIGNHSQVSDDLDNCGHSASKLWNVARYHAQQEWDDTGEIPSEADLKRELKDHERYNDLHSQSSQRVLEELAESFNGWFKKRKNGDTDAN
PPGYRKRGDNHPRSTVTWKQNGIKHDSKHNKLRLSKGFNLKQHRSDFILVEYETRPDVTVENIQQVRVVWNGDQWELHLVCKVEIPVEDAPGDNTAGIDL
GIKNYLAIAYDDGNAELYPGNVLKQDKHYFTRDEYDTEGENGPSQRALRARQKLSRRKDHFLHALAKHIVERCIDHKVGRIAIGDLSEIREDENGESRNW
GKRGNKKLHGWEFDRFTTLLEYKAEEHGILVDRTSERDTSKTCSCCGRKRDANRVERGLYVCESCGVVMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGHFVPSEQVDCKP

 

Blast result :
Comments
ISHtu3 is 97% aa (ORFB) similar to ISHvo17.
References
1] Friedhelm Pfeiffer (2013) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank