ISHtu3
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001861 | ND | Haloterrigena turkmenica | Haloterrigena turkmenica plasmid pHTUR01 |
DNA section
IS Length : 1471 bp
Ends
Left end : GTGATGATCAGGCGCAAAACCTCGCGCTTTAGCGCGGGGATACGCGCCGTCACTTGATGACGCAACCCACCGACAACAGCAGTGCTGGATGTTCTATTCC II struct. : Yes
Right end : CAAACCTCGGGGCATTTCGTACCGAGCGAACAGGTGGATTGCAAACCGTAATATCCCAACGCTCGGGAATCCTCGCTCTTTAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGATACGGACAC | TTAT | CGATCGATCGCG | tcaa |
DNA sequence
GTGATGATCAGGCGCAAAACCTCGCGCTTTAGCGCGGGGATACGCGCCGTCACTTGATGACGCAACCCACCGACAACAGCAGTGCTGGATGTTCTATTCC
TAATCATTATCTTTAATATGTAGGATTCTATAAGTCCTTATGAACACAGTTCGATGCTGGAGACAACCCGCACCTATCGAGCGAAAATCGGTAACCACTC
CCAAGTGAGTGACGACCTCGATAACTGCGGGCACTCAGCATCGAAACTGTGGAACGTCGCCCGCTACCACGCCCAACAAGAATGGGATGATACCGGCGAG
ATACCGTCTGAAGCCGACCTCAAGCGTGAGCTAAAAGACCACGAACGATACAATGACTTACATTCTCAGTCAAGTCAGCGAGTTCTAGAAGAGCTTGCTG
AGTCGTTCAACGGCTGGTTCAAAAAGCGCAAGAACGGCGATACAGACGCGAATCCACCCGGCTACCGAAAACGAGGCGACAACCACCCACGCTCCACCGT
GACGTGGAAACAAAACGGCATCAAACACGATTCCAAGCACAACAAACTCCGCCTGAGCAAAGGCTTCAACCTCAAACAGCACCGGTCGGACTTCATCCTC
GTCGAATACGAAACCCGACCAGACGTAACCGTGGAGAACATCCAGCAGGTCAGGGTCGTGTGGAACGGCGACCAGTGGGAACTCCACCTCGTCTGCAAAG
TCGAAATCCCCGTTGAGGACGCCCCCGGTGACAACACCGCTGGTATCGACCTCGGAATCAAGAACTACCTCGCCATCGCCTACGACGATGGAAACGCCGA
GTTGTATCCGGGGAACGTGCTGAAACAGGACAAGCACTACTTCACGCGAGACGAGTACGACACTGAAGGCGAGAACGGCCCGTCACAACGCGCGCTTCGC
GCTCGGCAGAAGTTGTCTCGGCGCAAAGACCACTTCCTGCACGCGCTCGCTAAGCACATCGTTGAGCGATGTATCGACCACAAGGTCGGACGCATCGCTA
TCGGTGATTTAAGCGAGATTCGTGAGGACGAGAACGGTGAGTCTCGAAACTGGGGCAAACGTGGGAACAAGAAACTCCACGGGTGGGAGTTTGACCGTTT
CACCACGTTGCTCGAATACAAGGCGGAGGAACACGGTATTCTCGTTGACCGCACGAGCGAGCGAGATACGTCGAAGACGTGTTCGTGTTGCGGTCGGAAG
CGAGACGCGAACAGGGTGGAGCGTGGCCTGTACGTCTGTGAATCGTGTGGCGTAGTGATGAATGCAGACGTGAATGGTGCAGTGAATATTCGCAGAAAGA
TAACTCAGAATCCTCCAACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCGGGGCATTTCGTACCGAGCGA
ACAGGTGGATTGCAAACCGTAATATCCCAACGCTCGGGAATCCTCGCTCTTTAGGGCGGGGAGGATGTCAA
TAATCATTATCTTTAATATGTAGGATTCTATAAGTCCTTATGAACACAGTTCGATGCTGGAGACAACCCGCACCTATCGAGCGAAAATCGGTAACCACTC
CCAAGTGAGTGACGACCTCGATAACTGCGGGCACTCAGCATCGAAACTGTGGAACGTCGCCCGCTACCACGCCCAACAAGAATGGGATGATACCGGCGAG
ATACCGTCTGAAGCCGACCTCAAGCGTGAGCTAAAAGACCACGAACGATACAATGACTTACATTCTCAGTCAAGTCAGCGAGTTCTAGAAGAGCTTGCTG
AGTCGTTCAACGGCTGGTTCAAAAAGCGCAAGAACGGCGATACAGACGCGAATCCACCCGGCTACCGAAAACGAGGCGACAACCACCCACGCTCCACCGT
GACGTGGAAACAAAACGGCATCAAACACGATTCCAAGCACAACAAACTCCGCCTGAGCAAAGGCTTCAACCTCAAACAGCACCGGTCGGACTTCATCCTC
GTCGAATACGAAACCCGACCAGACGTAACCGTGGAGAACATCCAGCAGGTCAGGGTCGTGTGGAACGGCGACCAGTGGGAACTCCACCTCGTCTGCAAAG
TCGAAATCCCCGTTGAGGACGCCCCCGGTGACAACACCGCTGGTATCGACCTCGGAATCAAGAACTACCTCGCCATCGCCTACGACGATGGAAACGCCGA
GTTGTATCCGGGGAACGTGCTGAAACAGGACAAGCACTACTTCACGCGAGACGAGTACGACACTGAAGGCGAGAACGGCCCGTCACAACGCGCGCTTCGC
GCTCGGCAGAAGTTGTCTCGGCGCAAAGACCACTTCCTGCACGCGCTCGCTAAGCACATCGTTGAGCGATGTATCGACCACAAGGTCGGACGCATCGCTA
TCGGTGATTTAAGCGAGATTCGTGAGGACGAGAACGGTGAGTCTCGAAACTGGGGCAAACGTGGGAACAAGAAACTCCACGGGTGGGAGTTTGACCGTTT
CACCACGTTGCTCGAATACAAGGCGGAGGAACACGGTATTCTCGTTGACCGCACGAGCGAGCGAGATACGTCGAAGACGTGTTCGTGTTGCGGTCGGAAG
CGAGACGCGAACAGGGTGGAGCGTGGCCTGTACGTCTGTGAATCGTGTGGCGTAGTGATGAATGCAGACGTGAATGGTGCAGTGAATATTCGCAGAAAGA
TAACTCAGAATCCTCCAACAGGGGATATGAGTAACGGTCGTTTGGCACGGCCAGTAGCCTACCTGTTCAACCAAACCTCGGGGCATTTCGTACCGAGCGA
ACAGGTGGATTGCAAACCGTAATATCCCAACGCTCGGGAATCCTCGCTCTTTAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1269 bp | 422 aa | 154 | 1422 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYRAKIGNHSQVSDDLDNCGHSASKLWNVARYHAQQEWDDTGEIPSEADLKRELKDHERYNDLHSQSSQRVLEELAESFNGWFKKRKNGDTDAN
PPGYRKRGDNHPRSTVTWKQNGIKHDSKHNKLRLSKGFNLKQHRSDFILVEYETRPDVTVENIQQVRVVWNGDQWELHLVCKVEIPVEDAPGDNTAGIDL
GIKNYLAIAYDDGNAELYPGNVLKQDKHYFTRDEYDTEGENGPSQRALRARQKLSRRKDHFLHALAKHIVERCIDHKVGRIAIGDLSEIREDENGESRNW
GKRGNKKLHGWEFDRFTTLLEYKAEEHGILVDRTSERDTSKTCSCCGRKRDANRVERGLYVCESCGVVMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGHFVPSEQVDCKP
PPGYRKRGDNHPRSTVTWKQNGIKHDSKHNKLRLSKGFNLKQHRSDFILVEYETRPDVTVENIQQVRVVWNGDQWELHLVCKVEIPVEDAPGDNTAGIDL
GIKNYLAIAYDDGNAELYPGNVLKQDKHYFTRDEYDTEGENGPSQRALRARQKLSRRKDHFLHALAKHIVERCIDHKVGRIAIGDLSEIREDENGESRNW
GKRGNKKLHGWEFDRFTTLLEYKAEEHGILVDRTSERDTSKTCSCCGRKRDANRVERGLYVCESCGVVMNADVNGAVNIRRKITQNPPTGDMSNGRLARP
VAYLFNQTSGHFVPSEQVDCKP
Blast result :
Comments
ISHtu3 is 97% aa (ORFB) similar to ISHvo17.
References
1] Friedhelm Pfeiffer (2013) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Mikhailova,N., Saunders,E., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Tindal,B., Fahnrich,R., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank