ISPa55

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KM210290 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa CB1
DNA section
IS Length : 1543 bp

Ends


IR Length : 13/14

IRL : gagtaaaAAGGAGACTTCCCGCTTCAGCGGCCAGGCCGCTCGGCATCGGG
IRR : ----catAAGGAGCTTCCCGTCAACCCGAGGTGCATGACGCCCTTGCCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCTTGAACGAATTGTTAG0

DNA sequence

GAGTAAAAAGGAGACTTCCCGCTTCAGCGGCCAGGCCGCTCGGCATCGGGTGCCATGATTGCGTTTGGGCAGCACAATCAAACGAAGGGGAAGTCTCCGA
TGGACACTGTAACGAAAATCGTGGGTGTGGACTTGGCCAAGAACGTGTTCTCGATCTGCGAGCTGGATGACGGCGGGCGCGTACGCCAGCGCCGGGACTT
GCAGCGCGCCGCGTTCACGGCTTGGCTGGCGCAGTTGTCGGCCGGCACGGTGGTGGCGATGGAAGCGTGCAGCGGCGCACACCATTGGGCGCGGCGTTGC
CTGTCGCACGGGCTGGTACCGAAGCTGATGGCGGCGCAGTTCGTCAAACCGTTCCGCAAGAGCCAAGCCAACAAGAACGACCGCAACGATGCCGAAGCCA
TCGCCACGGCCGCTCGGCAAGGCAACATGCGCTTCGTGTCGGTGAAGACCGTCGAGCAACAGGCCCGGCTGTCCTGGCACCGGGTGCGCGAGGGCTACAA
GACCGAAGCGCTGTCCATCGGCAACCGGCTGCGCGGGCTGTTGGCCGAGTTCGGGGTGGTGGTGGCGCAGAGCGATACCGCGTTGCGCCAAGCCCTGGGC
GATGCCGCATTGCGGTCCGGTTTGCCGGCGATGCTGGGCGAGCTGCTGGATGCCTTGGCCGGCCACTGGCGGCAGGTGCACGAACGGCTGGCCGAGTGCG
ATGCGCGCATCGCCGCGCACGCCAAGGCGGACGTGCGCAGCGTGCGAGCGCAGCAGATTCTCGGCGTCGGTTCACTGACCGCCGATGCGGTAGTGGCATC
GGTGGGTGACGGCCAGGACTTCCGCAACGGCCGGCAGTTGTCTGCATGGCTGGGCCTGACCCCGGTGCAACGCTCCAGCGGCGGCAAGGATCGGCTGGGG
TCGATCAGTTGCCGGGGTGACAGTTACCTGCGCACGCTGCTGATCCAGGGCGCGCGCAGCAGCGTGCAGCGGGCCAAGGCCGTGGTACCGGAGAAGGCCA
CCCCCGAGCAGATATGGATAAAAGACCTCTGCAGCCGAATGCCATTCGGCAAGCTGTTGGTGGCCATCGCCAACAAGCACGCCCGGCAACTGTGGGCGAT
GCTGGCGCGGCAGGAGGAGTACGACGCCGAAGCGTGGCTGCGACACCCGATGGTGCAGCGGCCGGCGAGCCGGAAGGGGGCGGTGATGCCCGCGTAACAC
GAGATTCGAGTTCACTCGCCAGAGCGAAGCGGTAACAAGCGGTCAGACCGCCCTGCGGAGAGCCTGACTAACTAGGTGGCATCACCACATGCCGGAACTG
ATCCTTCCGGCATGGATGAATCCGGTGAATGAGAGAGGCCCACAGGTGCGGTTTTTACCCTGGTCCGGATCGGCAACGACGATCCCACAAGACCGATTAT
GGAAATGCAGTCTGGCATTGCTTGAAACACCGCGAAGATACTGGCGAAGCAACAGCGTAGTAAGCAGTGAAAACAGGTAGAGCGAAGCCGAAAGCTCAAG
GCAAGGGCGTCATGCACCTCGGGTTGACGGGAAGCTCCTTATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa1001197+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDTVTKIVGVDLAKNVFSICELDDGGRVRQRRDLQRAAFTAWLAQLSAGTVVAMEACSGAHHWARRCLSHGLVPKLMAAQFVKPFRKSQANKNDRNDAEA
IATAARQGNMRFVSVKTVEQQARLSWHRVREGYKTEALSIGNRLRGLLAEFGVVVAQSDTALRQALGDAALRSGLPAMLGELLDALAGHWRQVHERLAEC
DARIAAHAKADVRSVRAQQILGVGSLTADAVVASVGDGQDFRNGRQLSAWLGLTPVQRSSGGKDRLGSISCRGDSYLRTLLIQGARSSVQRAKAVVPEKA
TPEQIWIKDLCSRMPFGKLLVAIANKHARQLWAMLARQEEYDAEAWLRHPMVQRPASRKGAVMPA

 

Blast result :
Comments
ISPa55 is 75% aa similar to ISPa34.
References
1] Botelho J., Grosso F., Sousa C. and Peixe L. (2014) J. Antimicrob. Chemother. PUBMED 25261420