ISPa55
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KM210290 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa CB1 |
DNA section
IS Length : 1543 bp
Ends
IR Length : 13/14
IRL : gagtaaaAAGGAGACTTCCCGCTTCAGCGGCCAGGCCGCTCGGCATCGGG
IRR : ----catAAGGAGCTTCCCGTCAACCCGAGGTGCATGACGCCCTTGCCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCTTGAAC | GAATTGTTAG | 0 |
DNA sequence
GAGTAAAAAGGAGACTTCCCGCTTCAGCGGCCAGGCCGCTCGGCATCGGGTGCCATGATTGCGTTTGGGCAGCACAATCAAACGAAGGGGAAGTCTCCGA
TGGACACTGTAACGAAAATCGTGGGTGTGGACTTGGCCAAGAACGTGTTCTCGATCTGCGAGCTGGATGACGGCGGGCGCGTACGCCAGCGCCGGGACTT
GCAGCGCGCCGCGTTCACGGCTTGGCTGGCGCAGTTGTCGGCCGGCACGGTGGTGGCGATGGAAGCGTGCAGCGGCGCACACCATTGGGCGCGGCGTTGC
CTGTCGCACGGGCTGGTACCGAAGCTGATGGCGGCGCAGTTCGTCAAACCGTTCCGCAAGAGCCAAGCCAACAAGAACGACCGCAACGATGCCGAAGCCA
TCGCCACGGCCGCTCGGCAAGGCAACATGCGCTTCGTGTCGGTGAAGACCGTCGAGCAACAGGCCCGGCTGTCCTGGCACCGGGTGCGCGAGGGCTACAA
GACCGAAGCGCTGTCCATCGGCAACCGGCTGCGCGGGCTGTTGGCCGAGTTCGGGGTGGTGGTGGCGCAGAGCGATACCGCGTTGCGCCAAGCCCTGGGC
GATGCCGCATTGCGGTCCGGTTTGCCGGCGATGCTGGGCGAGCTGCTGGATGCCTTGGCCGGCCACTGGCGGCAGGTGCACGAACGGCTGGCCGAGTGCG
ATGCGCGCATCGCCGCGCACGCCAAGGCGGACGTGCGCAGCGTGCGAGCGCAGCAGATTCTCGGCGTCGGTTCACTGACCGCCGATGCGGTAGTGGCATC
GGTGGGTGACGGCCAGGACTTCCGCAACGGCCGGCAGTTGTCTGCATGGCTGGGCCTGACCCCGGTGCAACGCTCCAGCGGCGGCAAGGATCGGCTGGGG
TCGATCAGTTGCCGGGGTGACAGTTACCTGCGCACGCTGCTGATCCAGGGCGCGCGCAGCAGCGTGCAGCGGGCCAAGGCCGTGGTACCGGAGAAGGCCA
CCCCCGAGCAGATATGGATAAAAGACCTCTGCAGCCGAATGCCATTCGGCAAGCTGTTGGTGGCCATCGCCAACAAGCACGCCCGGCAACTGTGGGCGAT
GCTGGCGCGGCAGGAGGAGTACGACGCCGAAGCGTGGCTGCGACACCCGATGGTGCAGCGGCCGGCGAGCCGGAAGGGGGCGGTGATGCCCGCGTAACAC
GAGATTCGAGTTCACTCGCCAGAGCGAAGCGGTAACAAGCGGTCAGACCGCCCTGCGGAGAGCCTGACTAACTAGGTGGCATCACCACATGCCGGAACTG
ATCCTTCCGGCATGGATGAATCCGGTGAATGAGAGAGGCCCACAGGTGCGGTTTTTACCCTGGTCCGGATCGGCAACGACGATCCCACAAGACCGATTAT
GGAAATGCAGTCTGGCATTGCTTGAAACACCGCGAAGATACTGGCGAAGCAACAGCGTAGTAAGCAGTGAAAACAGGTAGAGCGAAGCCGAAAGCTCAAG
GCAAGGGCGTCATGCACCTCGGGTTGACGGGAAGCTCCTTATG
TGGACACTGTAACGAAAATCGTGGGTGTGGACTTGGCCAAGAACGTGTTCTCGATCTGCGAGCTGGATGACGGCGGGCGCGTACGCCAGCGCCGGGACTT
GCAGCGCGCCGCGTTCACGGCTTGGCTGGCGCAGTTGTCGGCCGGCACGGTGGTGGCGATGGAAGCGTGCAGCGGCGCACACCATTGGGCGCGGCGTTGC
CTGTCGCACGGGCTGGTACCGAAGCTGATGGCGGCGCAGTTCGTCAAACCGTTCCGCAAGAGCCAAGCCAACAAGAACGACCGCAACGATGCCGAAGCCA
TCGCCACGGCCGCTCGGCAAGGCAACATGCGCTTCGTGTCGGTGAAGACCGTCGAGCAACAGGCCCGGCTGTCCTGGCACCGGGTGCGCGAGGGCTACAA
GACCGAAGCGCTGTCCATCGGCAACCGGCTGCGCGGGCTGTTGGCCGAGTTCGGGGTGGTGGTGGCGCAGAGCGATACCGCGTTGCGCCAAGCCCTGGGC
GATGCCGCATTGCGGTCCGGTTTGCCGGCGATGCTGGGCGAGCTGCTGGATGCCTTGGCCGGCCACTGGCGGCAGGTGCACGAACGGCTGGCCGAGTGCG
ATGCGCGCATCGCCGCGCACGCCAAGGCGGACGTGCGCAGCGTGCGAGCGCAGCAGATTCTCGGCGTCGGTTCACTGACCGCCGATGCGGTAGTGGCATC
GGTGGGTGACGGCCAGGACTTCCGCAACGGCCGGCAGTTGTCTGCATGGCTGGGCCTGACCCCGGTGCAACGCTCCAGCGGCGGCAAGGATCGGCTGGGG
TCGATCAGTTGCCGGGGTGACAGTTACCTGCGCACGCTGCTGATCCAGGGCGCGCGCAGCAGCGTGCAGCGGGCCAAGGCCGTGGTACCGGAGAAGGCCA
CCCCCGAGCAGATATGGATAAAAGACCTCTGCAGCCGAATGCCATTCGGCAAGCTGTTGGTGGCCATCGCCAACAAGCACGCCCGGCAACTGTGGGCGAT
GCTGGCGCGGCAGGAGGAGTACGACGCCGAAGCGTGGCTGCGACACCCGATGGTGCAGCGGCCGGCGAGCCGGAAGGGGGCGGTGATGCCCGCGTAACAC
GAGATTCGAGTTCACTCGCCAGAGCGAAGCGGTAACAAGCGGTCAGACCGCCCTGCGGAGAGCCTGACTAACTAGGTGGCATCACCACATGCCGGAACTG
ATCCTTCCGGCATGGATGAATCCGGTGAATGAGAGAGGCCCACAGGTGCGGTTTTTACCCTGGTCCGGATCGGCAACGACGATCCCACAAGACCGATTAT
GGAAATGCAGTCTGGCATTGCTTGAAACACCGCGAAGATACTGGCGAAGCAACAGCGTAGTAAGCAGTGAAAACAGGTAGAGCGAAGCCGAAAGCTCAAG
GCAAGGGCGTCATGCACCTCGGGTTGACGGGAAGCTCCTTATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1098 bp | 365 aa | 100 | 1197 | + | No |
Chemistry : DEDD
ORF sequence :
MDTVTKIVGVDLAKNVFSICELDDGGRVRQRRDLQRAAFTAWLAQLSAGTVVAMEACSGAHHWARRCLSHGLVPKLMAAQFVKPFRKSQANKNDRNDAEA
IATAARQGNMRFVSVKTVEQQARLSWHRVREGYKTEALSIGNRLRGLLAEFGVVVAQSDTALRQALGDAALRSGLPAMLGELLDALAGHWRQVHERLAEC
DARIAAHAKADVRSVRAQQILGVGSLTADAVVASVGDGQDFRNGRQLSAWLGLTPVQRSSGGKDRLGSISCRGDSYLRTLLIQGARSSVQRAKAVVPEKA
TPEQIWIKDLCSRMPFGKLLVAIANKHARQLWAMLARQEEYDAEAWLRHPMVQRPASRKGAVMPA
IATAARQGNMRFVSVKTVEQQARLSWHRVREGYKTEALSIGNRLRGLLAEFGVVVAQSDTALRQALGDAALRSGLPAMLGELLDALAGHWRQVHERLAEC
DARIAAHAKADVRSVRAQQILGVGSLTADAVVASVGDGQDFRNGRQLSAWLGLTPVQRSSGGKDRLGSISCRGDSYLRTLLIQGARSSVQRAKAVVPEKA
TPEQIWIKDLCSRMPFGKLLVAIANKHARQLWAMLARQEEYDAEAWLRHPMVQRPASRKGAVMPA
Blast result :
Comments
ISPa55 is 75% aa similar to ISPa34.
References
1] Botelho J., Grosso F., Sousa C. and Peixe L. (2014) J. Antimicrob. Chemother. PUBMED 25261420