ISHhu9

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831303 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1441 bp

Ends


Left end : GTGGACCGCAGGAGAAAGCCCCGCGCTTCAGGGCGAGGATCAATCCGTAAGCCCGATTCCACAACCGCAGTCGGTAGCATAGACCGATATTCCCGCGGGT II struct. : Yes
Right end : TTGACGTTCCACGCGAAAGCGTACTTGAGAACCGAGGAAACGCGCAACCTGAATATCCCCTTCGGGGAATCCTCGCCCTATAGCGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CCTCGGGCCGCATTACAGCCAGAGGTCGtcaa

DNA sequence

GTGGACCGCAGGAGAAAGCCCCGCGCTTCAGGGCGAGGATCAATCCGTAAGCCCGATTCCACAACCGCAGTCGGTAGCATAGACCGATATTCCCGCGGGT
TCTACGAAAGCCTTTCCACTAATGGCAGAGATATACCAACTGCAATCGTGGTCACGACGACTGTTACCGTCAAATTCCACAACCCGTCTCTCGCTCGGCG
CAAAGAGTGGCAACGCGCCGCCCAACTCTACCGGGACACCAAGCAATTCTGCATCGACGGGTGGGAGAACGATGACTTCGATAAATCCGTGACCACGGCC
AGCATCGACAACGGCCTCTACTCGGCCATCCAGAACCAAGCCATCCGCGAAGCGAAGGCCGACCATCAGGAGGACGGCGCTGTGTCCTACCGGCAGAGCC
AACCGTTCGCCCTTAACAACCAAAACTGGGAAATCGACACCACCGAGAACGGTTCGGTTGTCGTCGGCTTTCCCTGTATCTCCGGCTGGTGGTACACCCC
CGTCGAGGTGTACGATGACGTGGACGACGCTGTTCGTCGTGTCTTGAACGGCGAGGCTGACAAGACACGGCTTCAAGTCTACCGCCGGGGTGATGACTGG
TTCTGTACGTTCAGCGTTGAATGCGATACTAACCCCGATGGAGAGACGGCCATCGGCGTGGACGTGGGCCACAACAACCTGCTGGCGGCCCACGCCGAGG
ACACCGACGAATCGATGCTGGTGTCCGGTCGAGAGGCAAAATACGTTCGACGACGCTTTCGTTCCCTGCGCGAGTCGCTTCAGGAAGCGGGTGCGCTTCG
CGCACTCAACCGCGCAGATGACAAAGAAAGCCGCCGGATTCGTGACCTCAATCACACTGCCTCCCGCCGCCTCATCGACTGGATAGAGCAGTTTGAGAAC
CCTGTCCTCCGGCTTGAAGACCTCGAAGGTATCCGCGATGGATCGGACTGGCGTGGGGTCCACTCGTGGCACTTCCACCAGTTGCAGGATTTTATCGTCT
ACAAGGCGGAACGCGCCGGTATCCGGGTCGAGAAGGTGGACCCGGAGGACACCAGCCAGCGGTGTTCGGTCTGTGGCGAGTACGGTACCCGCGACGGCGA
CCACTTTTCGTGTCCGTCGTGTGGTCGCGAGCGACACTCGGACCTGAACGGAGCGGAGAACATCGCACAGCGGGAGGGAGAACCATGCACGGCGTAGCAG
TTCGGCTGACGCGAACCGTGCGGCCTCGCGGACTGAAGAACCCGCTGTCTTCGACGCCCGGCGTGACCGGGGAGGAAGGCCGCTTTGACACGGCTGTACG
CGCTGGAAAGCACACCGTTGGTCACAACTCGGTGGCGACCTTTGACGTTCCACGCGAAAGCGTACTTGAGAACCGAGGAAACGCGCAACCTGAATATCCC
CTTCGGGGAATCCTCGCCCTATAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1050 bp349 aa1491198+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MVTTTVTVKFHNPSLARRKEWQRAAQLYRDTKQFCIDGWENDDFDKSVTTASIDNGLYSAIQNQAIREAKADHQEDGAVSYRQSQPFALNNQNWEIDTTE
NGSVVVGFPCISGWWYTPVEVYDDVDDAVRRVLNGEADKTRLQVYRRGDDWFCTFSVECDTNPDGETAIGVDVGHNNLLAAHAEDTDESMLVSGREAKYV
RRRFRSLRESLQEAGALRALNRADDKESRRIRDLNHTASRRLIDWIEQFENPVLRLEDLEGIRDGSDWRGVHSWHFHQLQDFIVYKAERAGIRVEKVDPE
DTSQRCSVCGEYGTRDGDHFSCPSCGRERHSDLNGAENIAQREGEPCTA

 

Blast result :
Comments
ISHhu9 is 85% aa similar (ORFB) to ISHbo7.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130