ISHhu9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831303 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1441 bp
Ends
Left end : GTGGACCGCAGGAGAAAGCCCCGCGCTTCAGGGCGAGGATCAATCCGTAAGCCCGATTCCACAACCGCAGTCGGTAGCATAGACCGATATTCCCGCGGGT II struct. : Yes
Right end : TTGACGTTCCACGCGAAAGCGTACTTGAGAACCGAGGAAACGCGCAACCTGAATATCCCCTTCGGGGAATCCTCGCCCTATAGCGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CCTCGGGCCGCA | TTAC | AGCCAGAGGTCG | tcaa |
DNA sequence
GTGGACCGCAGGAGAAAGCCCCGCGCTTCAGGGCGAGGATCAATCCGTAAGCCCGATTCCACAACCGCAGTCGGTAGCATAGACCGATATTCCCGCGGGT
TCTACGAAAGCCTTTCCACTAATGGCAGAGATATACCAACTGCAATCGTGGTCACGACGACTGTTACCGTCAAATTCCACAACCCGTCTCTCGCTCGGCG
CAAAGAGTGGCAACGCGCCGCCCAACTCTACCGGGACACCAAGCAATTCTGCATCGACGGGTGGGAGAACGATGACTTCGATAAATCCGTGACCACGGCC
AGCATCGACAACGGCCTCTACTCGGCCATCCAGAACCAAGCCATCCGCGAAGCGAAGGCCGACCATCAGGAGGACGGCGCTGTGTCCTACCGGCAGAGCC
AACCGTTCGCCCTTAACAACCAAAACTGGGAAATCGACACCACCGAGAACGGTTCGGTTGTCGTCGGCTTTCCCTGTATCTCCGGCTGGTGGTACACCCC
CGTCGAGGTGTACGATGACGTGGACGACGCTGTTCGTCGTGTCTTGAACGGCGAGGCTGACAAGACACGGCTTCAAGTCTACCGCCGGGGTGATGACTGG
TTCTGTACGTTCAGCGTTGAATGCGATACTAACCCCGATGGAGAGACGGCCATCGGCGTGGACGTGGGCCACAACAACCTGCTGGCGGCCCACGCCGAGG
ACACCGACGAATCGATGCTGGTGTCCGGTCGAGAGGCAAAATACGTTCGACGACGCTTTCGTTCCCTGCGCGAGTCGCTTCAGGAAGCGGGTGCGCTTCG
CGCACTCAACCGCGCAGATGACAAAGAAAGCCGCCGGATTCGTGACCTCAATCACACTGCCTCCCGCCGCCTCATCGACTGGATAGAGCAGTTTGAGAAC
CCTGTCCTCCGGCTTGAAGACCTCGAAGGTATCCGCGATGGATCGGACTGGCGTGGGGTCCACTCGTGGCACTTCCACCAGTTGCAGGATTTTATCGTCT
ACAAGGCGGAACGCGCCGGTATCCGGGTCGAGAAGGTGGACCCGGAGGACACCAGCCAGCGGTGTTCGGTCTGTGGCGAGTACGGTACCCGCGACGGCGA
CCACTTTTCGTGTCCGTCGTGTGGTCGCGAGCGACACTCGGACCTGAACGGAGCGGAGAACATCGCACAGCGGGAGGGAGAACCATGCACGGCGTAGCAG
TTCGGCTGACGCGAACCGTGCGGCCTCGCGGACTGAAGAACCCGCTGTCTTCGACGCCCGGCGTGACCGGGGAGGAAGGCCGCTTTGACACGGCTGTACG
CGCTGGAAAGCACACCGTTGGTCACAACTCGGTGGCGACCTTTGACGTTCCACGCGAAAGCGTACTTGAGAACCGAGGAAACGCGCAACCTGAATATCCC
CTTCGGGGAATCCTCGCCCTATAGCGCGGGGAGGATGTCAA
TCTACGAAAGCCTTTCCACTAATGGCAGAGATATACCAACTGCAATCGTGGTCACGACGACTGTTACCGTCAAATTCCACAACCCGTCTCTCGCTCGGCG
CAAAGAGTGGCAACGCGCCGCCCAACTCTACCGGGACACCAAGCAATTCTGCATCGACGGGTGGGAGAACGATGACTTCGATAAATCCGTGACCACGGCC
AGCATCGACAACGGCCTCTACTCGGCCATCCAGAACCAAGCCATCCGCGAAGCGAAGGCCGACCATCAGGAGGACGGCGCTGTGTCCTACCGGCAGAGCC
AACCGTTCGCCCTTAACAACCAAAACTGGGAAATCGACACCACCGAGAACGGTTCGGTTGTCGTCGGCTTTCCCTGTATCTCCGGCTGGTGGTACACCCC
CGTCGAGGTGTACGATGACGTGGACGACGCTGTTCGTCGTGTCTTGAACGGCGAGGCTGACAAGACACGGCTTCAAGTCTACCGCCGGGGTGATGACTGG
TTCTGTACGTTCAGCGTTGAATGCGATACTAACCCCGATGGAGAGACGGCCATCGGCGTGGACGTGGGCCACAACAACCTGCTGGCGGCCCACGCCGAGG
ACACCGACGAATCGATGCTGGTGTCCGGTCGAGAGGCAAAATACGTTCGACGACGCTTTCGTTCCCTGCGCGAGTCGCTTCAGGAAGCGGGTGCGCTTCG
CGCACTCAACCGCGCAGATGACAAAGAAAGCCGCCGGATTCGTGACCTCAATCACACTGCCTCCCGCCGCCTCATCGACTGGATAGAGCAGTTTGAGAAC
CCTGTCCTCCGGCTTGAAGACCTCGAAGGTATCCGCGATGGATCGGACTGGCGTGGGGTCCACTCGTGGCACTTCCACCAGTTGCAGGATTTTATCGTCT
ACAAGGCGGAACGCGCCGGTATCCGGGTCGAGAAGGTGGACCCGGAGGACACCAGCCAGCGGTGTTCGGTCTGTGGCGAGTACGGTACCCGCGACGGCGA
CCACTTTTCGTGTCCGTCGTGTGGTCGCGAGCGACACTCGGACCTGAACGGAGCGGAGAACATCGCACAGCGGGAGGGAGAACCATGCACGGCGTAGCAG
TTCGGCTGACGCGAACCGTGCGGCCTCGCGGACTGAAGAACCCGCTGTCTTCGACGCCCGGCGTGACCGGGGAGGAAGGCCGCTTTGACACGGCTGTACG
CGCTGGAAAGCACACCGTTGGTCACAACTCGGTGGCGACCTTTGACGTTCCACGCGAAAGCGTACTTGAGAACCGAGGAAACGCGCAACCTGAATATCCC
CTTCGGGGAATCCTCGCCCTATAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 149 | 1198 | + | No |
AG : TnpB
ORF sequence :
MVTTTVTVKFHNPSLARRKEWQRAAQLYRDTKQFCIDGWENDDFDKSVTTASIDNGLYSAIQNQAIREAKADHQEDGAVSYRQSQPFALNNQNWEIDTTE
NGSVVVGFPCISGWWYTPVEVYDDVDDAVRRVLNGEADKTRLQVYRRGDDWFCTFSVECDTNPDGETAIGVDVGHNNLLAAHAEDTDESMLVSGREAKYV
RRRFRSLRESLQEAGALRALNRADDKESRRIRDLNHTASRRLIDWIEQFENPVLRLEDLEGIRDGSDWRGVHSWHFHQLQDFIVYKAERAGIRVEKVDPE
DTSQRCSVCGEYGTRDGDHFSCPSCGRERHSDLNGAENIAQREGEPCTA
NGSVVVGFPCISGWWYTPVEVYDDVDDAVRRVLNGEADKTRLQVYRRGDDWFCTFSVECDTNPDGETAIGVDVGHNNLLAAHAEDTDESMLVSGREAKYV
RRRFRSLRESLQEAGALRALNRADDKESRRIRDLNHTASRRLIDWIEQFENPVLRLEDLEGIRDGSDWRGVHSWHFHQLQDFIVYKAERAGIRVEKVDPE
DTSQRCSVCGEYGTRDGDHFSCPSCGRERHSDLNGAENIAQREGEPCTA
Blast result :
Comments
ISHhu9 is 85% aa similar (ORFB) to ISHbo7.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130