ISHhu7

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831302 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1477 bp

Ends


Left end : GGAAAGTCAAGGAGAAAGCCCCGCGCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGGGCCGGGCCGGATATTCCACGCCAA II struct. : Yes
Right end : GAAACTGGTGCGTTCGTACCTCAAGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CACCGAGCCGAGTTACCCATGTTTCGAGtcaa

DNA sequence

GGAAAGTCAAGGAGAAAGCCCCGCGCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGGGCCGGGCCGGATATTCCACGCCAA
TCCATACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTATACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTTGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATCGGCCACATCCCCAGT
CACACCGAACTCACCGCGTACCTCAAAACCCACGACCGCTATGATGACCTGCATTCGCAGTCAAGTCAGCGAGTCCTCCAAGAACTCGCTGAGGCGTTCA
CCGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTAAAGGAGTATTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGACCCGGCCTGATGTTGACTTCTCTACGGTGGAGAGCGTCCAACAAGTCCGAGCCGTTTGGACAGGGAATGAATGGGAACTGCAGTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTAGGTGTTGACCTCGGCATCAACAACTTCGCCGCCCTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGTTGAACTGCTTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCCCAGTGTGACGATTCGGACTCCGAGCAGGCCACGCGGTTAAAC
CAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTATCCGGTGTCCGTGAGGATGAGGAGAACGGTGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCGTTCGACCGCTTCAC
CGACCTGCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGAAGCGT
GATACAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATGCGGTGGCGAATGCGGACGTGAACGGTGCTGAGAACATTCGACAGAAAGTAT
CTCCGAGTCTCGCCTGTGATGGGGGAGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAAACTGGTGCGTTCGTACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1391419+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPSHTELTAYLKTHDRYDDLHSQSSQRVLQELAEAFTGWYGKRRNGDTR
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQTRPDVDFSTVESVQQVRAVWTGNEWELQFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNQKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRKRDTNRVERGLYVCDSCDAVANADVNGAENIRQKVSPSLACDGGDRSN
GWLAQPSTFLFDKETGAFVPQEQATS

 

Blast result :
Comments
ISHhu7 is 75% aa (ORFB) similar to ISHxa1.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130