ISHhu7
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1477 bp
Ends
Left end : GGAAAGTCAAGGAGAAAGCCCCGCGCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGGGCCGGGCCGGATATTCCACGCCAA II struct. : Yes
Right end : GAAACTGGTGCGTTCGTACCTCAAGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CACCGAGCCGAG | TTAC | CCATGTTTCGAG | tcaa |
DNA sequence
GGAAAGTCAAGGAGAAAGCCCCGCGCTTCAGGGCGGGGATGAATCCGACACTACCTTTCACTAACCACGTTCGAGGGCCGGGCCGGATATTCCACGCCAA
TCCATACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTATACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTTGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATCGGCCACATCCCCAGT
CACACCGAACTCACCGCGTACCTCAAAACCCACGACCGCTATGATGACCTGCATTCGCAGTCAAGTCAGCGAGTCCTCCAAGAACTCGCTGAGGCGTTCA
CCGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTAAAGGAGTATTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGACCCGGCCTGATGTTGACTTCTCTACGGTGGAGAGCGTCCAACAAGTCCGAGCCGTTTGGACAGGGAATGAATGGGAACTGCAGTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTAGGTGTTGACCTCGGCATCAACAACTTCGCCGCCCTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGTTGAACTGCTTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCCCAGTGTGACGATTCGGACTCCGAGCAGGCCACGCGGTTAAAC
CAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTATCCGGTGTCCGTGAGGATGAGGAGAACGGTGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCGTTCGACCGCTTCAC
CGACCTGCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGAAGCGT
GATACAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATGCGGTGGCGAATGCGGACGTGAACGGTGCTGAGAACATTCGACAGAAAGTAT
CTCCGAGTCTCGCCTGTGATGGGGGAGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAAACTGGTGCGTTCGTACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
TCCATACTATTAACTAATCTTATCGACATAGGTTACGTATGGCGAAACAGGTCGTCACCCGCACCTATACTGCTTCCATACGGAACCAGCAACAGGTGTC
CGACGACCTTGATTCGCTTGGGTTCGCAGCCTCGAAACTCTGGAACGTCGGACGGTGGGTCTGTGACAGAGTGTGGTCTGAGATCGGCCACATCCCCAGT
CACACCGAACTCACCGCGTACCTCAAAACCCACGACCGCTATGATGACCTGCATTCGCAGTCAAGTCAGCGAGTCCTCCAAGAACTCGCTGAGGCGTTCA
CCGGCTGGTACGGTAAACGACGCAACGGAGACACGAGAGCGAATCCGCCGAAGTACCGCAAGCACGGCGACGACCACCCACGAAGTACGGTCACGTTCAA
ACAGAAAGGCTTCAAGCTCGACACCCAGTACAACCGCGTCCGACTCAGTAAAGGGTCGAACCTAAAGGAGTATTGGTCGGACTTCGTCCTCTGCGAGTAC
CAGACCCGGCCTGATGTTGACTTCTCTACGGTGGAGAGCGTCCAACAAGTCCGAGCCGTTTGGACAGGGAATGAATGGGAACTGCAGTTCGTCTGCAAGG
TCGAAGTCGAAGTGAGCGAATCGCCCGGCGAGAAGACAGTAGGTGTTGACCTCGGCATCAACAACTTCGCCGCCCTCGCCTACGAAGACGGTCACAGCGA
ACTGTATCCGTTGAACTGCTTGAAGCAGGATGACTACTACTTCAGCAAGCGACTCGCCCAGTGTGACGATTCGGACTCCGAGCAGGCCACGCGGTTAAAC
CAGAAGAAGTCGGCTCGCCGTACCCACTACTTCCACACTCTTTCAAAACACATCGTCCAGCGGTGTGTTGACGAGGGTGTTGGAACGATTGCCGTGGGTG
ATCTATCCGGTGTCCGTGAGGATGAGGAGAACGGTGAGTCGAAGAACTGGGGCAAGCACGGCAACCTTGACCTGCACTCGTGGGCGTTCGACCGCTTCAC
CGACCTGCTCGAATACAAGGCCGAGATGGAAGGCATCTCGGTTGAAGAAGTGTCTGAGCGAGATACGTCGAAGTCGTGTTCGTGCTGTGGTCGGAAGCGT
GATACAAACCGTGTTGAGCGTGGGCTGTACGTCTGCGATTCGTGTGATGCGGTGGCGAATGCGGACGTGAACGGTGCTGAGAACATTCGACAGAAAGTAT
CTCCGAGTCTCGCCTGTGATGGGGGAGATAGGAGTAACGGCTGGTTGGCACAGCCATCGACGTTCCTGTTTGACAAGGAAACTGGTGCGTTCGTACCTCA
AGAACAGGCTACGTCGTAAACCATAATATCCCAACGCGGTCGGGAATCCTCGCCCTTCAGGGCGGGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 139 | 1419 | + | No |
AG : TnpB
ORF sequence :
MAKQVVTRTYTASIRNQQQVSDDLDSLGFAASKLWNVGRWVCDRVWSEIGHIPSHTELTAYLKTHDRYDDLHSQSSQRVLQELAEAFTGWYGKRRNGDTR
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQTRPDVDFSTVESVQQVRAVWTGNEWELQFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNQKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRKRDTNRVERGLYVCDSCDAVANADVNGAENIRQKVSPSLACDGGDRSN
GWLAQPSTFLFDKETGAFVPQEQATS
ANPPKYRKHGDDHPRSTVTFKQKGFKLDTQYNRVRLSKGSNLKEYWSDFVLCEYQTRPDVDFSTVESVQQVRAVWTGNEWELQFVCKVEVEVSESPGEKT
VGVDLGINNFAALAYEDGHSELYPLNCLKQDDYYFSKRLAQCDDSDSEQATRLNQKKSARRTHYFHTLSKHIVQRCVDEGVGTIAVGDLSGVREDEENGE
SKNWGKHGNLDLHSWAFDRFTDLLEYKAEMEGISVEEVSERDTSKSCSCCGRKRDTNRVERGLYVCDSCDAVANADVNGAENIRQKVSPSLACDGGDRSN
GWLAQPSTFLFDKETGAFVPQEQATS
Blast result :
Comments
ISHhu7 is 75% aa (ORFB) similar to ISHxa1.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130