ISHhu6

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LN831302 ND Halobacterium hubeiense
Halobacterium hubeiense
DNA section
IS Length : 1564 bp

Ends


Left end : CCTTAAACAGCGAGGGAATCCCCGGCCTTTAGGCCGGGAGGGAATCGCGTAAGCGCTACTACACAGTCCAACGCTCAATCGCCATTATCGGAATCCAACT II struct. : Yes
Right end : CCGGACAGATGACGCTCTCGGCGTACTCGGACTGAAACCTGCCAGCCCGGATTTCCCCTCGTAGGGGAAGCCCCGCCGTTTACGGCGGGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
CGAGAAAGACAACCATTAGGCGAATGTCtcac

DNA sequence

CCTTAAACAGCGAGGGAATCCCCGGCCTTTAGGCCGGGAGGGAATCGCGTAAGCGCTACTACACAGTCCAACGCTCAATCGCCATTATCGGAATCCAACT
CCCGTTGCGCGTGGAGTAGCATCCCCTTCCACGTTAGACCGTGACGCTTCTTCGTCTCTTTCAGCGACTCGTACTGTTCTTCGTCTACCTCGAAGTTGAT
GTGGGGCATATCTCATTCTTTCTCCCCGTTACACTTAAGTTTATCTACGTTGTATCTACGGGTGTGTCCGAGACGGTGACGAAGACGCTACAGGCCACGC
TCGCAACGCCCACCACGGGCAAAGAGCAACGCCTACAGCGCCTCTTGGACACCTACCGCGAAGCACTCCACGACGCCTTCGACAACAGGGCGGATACAAT
GTCTGCCGTCAACGATGTTGTGACGCCCTACGACTTGCCGTATCAGGCCAAGGACGCGCTCAAGTCCTACGTCCCGAAGCTTCGGGATACGTACAACGCC
GAGGAGTTGGACGACGAACATCCAGCTCGGCTCGTCAATCGAGCGGCCACATTCGACCACTCGGCGGAGCGCGACCACGGCTTCGTCTGGCAGGTTCCGC
AACCCGGTCGCGGGACGAACTTCTGGATTCCGCTTCAGATCAACCCCGAACAGGAATCACTCTGGTTCGACCTGCTGAATGGGGACGTGACGGCGGGCGA
ACTACGCCTTCAGCGACACCGCACGTCGTGGGAGTTGCACGTCACCGTCGAATACTCGGTCGAAGAACCGACCGAGTCGGACGACCCGACGTACATCGGC
TTCGACGTCGGCGAGAGCGCGTTGATTACGGGCTGTGCCCTCAAACGCGACGTGCCACGGAAGCCGATGCTCGTCAGCGGCAGTCGAGCGCGACACCTTC
GCAAAGAGATGCATACCACGCTCAAGCGACTGCAAGAGCGTAACGCCGCTCAGTGGCGTGTGGACGAACGATTCGACCACTACCAGAACGCCCTGACAGA
TATTGTCGAGAAGGCGTCTCGGGAGGCCGTCGAATATGCCCGACAGTTCGAGGACGCGGTTATCGTCCTCGAAGACTTGTCGTACATCCGCGAGCATCTC
GACTACGGGAAGTGGATGAATCGCCGCCTCCACAACTGGGCGTTCGCCCGGCTACAGGGCCGCATCGAAGACAAAGCGGCCGAGGCAGGGATTCGCGTTG
AGTACGTCAACGCGGCATATACCTCGCAGACCTGCCACGCCTGCGGTCGTCTCGGTCGGCGAGATGAACAAGCGGAGTTTGTGTGTCCGCACGACGATTG
CCACGTCTCGAAGTTCCAAGCAGATATTAACGCGGCGGCGAACATCGCCGGTCGCGCTAACCCGTGGGGAGAGAGCGTCCGTTGGGAACCCGGACGCGAT
GACTCGCCTCGGGATGGGAGCGCCTGTGACAGCGCCACAGTCCTCCGAGAGACGAGTCCGAAACCCGGACAGATGACGCTCTCGGCGTACTCGGACTGAA
ACCTGCCAGCCCGGATTTCCCCTCGTAGGGGAAGCCCCGCCGTTTACGGCGGGGAGGATGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa2641499+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSETVTKTLQATLATPTTGKEQRLQRLLDTYREALHDAFDNRADTMSAVNDVVTPYDLPYQAKDALKSYVPKLRDTYNAEELDDEHPARLVNRAATFDHS
AERDHGFVWQVPQPGRGTNFWIPLQINPEQESLWFDLLNGDVTAGELRLQRHRTSWELHVTVEYSVEEPTESDDPTYIGFDVGESALITGCALKRDVPRK
PMLVSGSRARHLRKEMHTTLKRLQERNAAQWRVDERFDHYQNALTDIVEKASREAVEYARQFEDAVIVLEDLSYIREHLDYGKWMNRRLHNWAFARLQGR
IEDKAAEAGIRVEYVNAAYTSQTCHACGRLGRRDEQAEFVCPHDDCHVSKFQADINAAANIAGRANPWGESVRWEPGRDDSPRDGSACDSATVLRETSPK
PGQMTLSAYSD

 

Blast result :
Comments
ISHhu6 is 84% aa (ORFB) similar to ISNamo19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130