ISHhu6
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1564 bp
Ends
Left end : CCTTAAACAGCGAGGGAATCCCCGGCCTTTAGGCCGGGAGGGAATCGCGTAAGCGCTACTACACAGTCCAACGCTCAATCGCCATTATCGGAATCCAACT II struct. : Yes
Right end : CCGGACAGATGACGCTCTCGGCGTACTCGGACTGAAACCTGCCAGCCCGGATTTCCCCTCGTAGGGGAAGCCCCGCCGTTTACGGCGGGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CGAGAAAGACAA | CCAT | TAGGCGAATGTC | tcac |
DNA sequence
CCTTAAACAGCGAGGGAATCCCCGGCCTTTAGGCCGGGAGGGAATCGCGTAAGCGCTACTACACAGTCCAACGCTCAATCGCCATTATCGGAATCCAACT
CCCGTTGCGCGTGGAGTAGCATCCCCTTCCACGTTAGACCGTGACGCTTCTTCGTCTCTTTCAGCGACTCGTACTGTTCTTCGTCTACCTCGAAGTTGAT
GTGGGGCATATCTCATTCTTTCTCCCCGTTACACTTAAGTTTATCTACGTTGTATCTACGGGTGTGTCCGAGACGGTGACGAAGACGCTACAGGCCACGC
TCGCAACGCCCACCACGGGCAAAGAGCAACGCCTACAGCGCCTCTTGGACACCTACCGCGAAGCACTCCACGACGCCTTCGACAACAGGGCGGATACAAT
GTCTGCCGTCAACGATGTTGTGACGCCCTACGACTTGCCGTATCAGGCCAAGGACGCGCTCAAGTCCTACGTCCCGAAGCTTCGGGATACGTACAACGCC
GAGGAGTTGGACGACGAACATCCAGCTCGGCTCGTCAATCGAGCGGCCACATTCGACCACTCGGCGGAGCGCGACCACGGCTTCGTCTGGCAGGTTCCGC
AACCCGGTCGCGGGACGAACTTCTGGATTCCGCTTCAGATCAACCCCGAACAGGAATCACTCTGGTTCGACCTGCTGAATGGGGACGTGACGGCGGGCGA
ACTACGCCTTCAGCGACACCGCACGTCGTGGGAGTTGCACGTCACCGTCGAATACTCGGTCGAAGAACCGACCGAGTCGGACGACCCGACGTACATCGGC
TTCGACGTCGGCGAGAGCGCGTTGATTACGGGCTGTGCCCTCAAACGCGACGTGCCACGGAAGCCGATGCTCGTCAGCGGCAGTCGAGCGCGACACCTTC
GCAAAGAGATGCATACCACGCTCAAGCGACTGCAAGAGCGTAACGCCGCTCAGTGGCGTGTGGACGAACGATTCGACCACTACCAGAACGCCCTGACAGA
TATTGTCGAGAAGGCGTCTCGGGAGGCCGTCGAATATGCCCGACAGTTCGAGGACGCGGTTATCGTCCTCGAAGACTTGTCGTACATCCGCGAGCATCTC
GACTACGGGAAGTGGATGAATCGCCGCCTCCACAACTGGGCGTTCGCCCGGCTACAGGGCCGCATCGAAGACAAAGCGGCCGAGGCAGGGATTCGCGTTG
AGTACGTCAACGCGGCATATACCTCGCAGACCTGCCACGCCTGCGGTCGTCTCGGTCGGCGAGATGAACAAGCGGAGTTTGTGTGTCCGCACGACGATTG
CCACGTCTCGAAGTTCCAAGCAGATATTAACGCGGCGGCGAACATCGCCGGTCGCGCTAACCCGTGGGGAGAGAGCGTCCGTTGGGAACCCGGACGCGAT
GACTCGCCTCGGGATGGGAGCGCCTGTGACAGCGCCACAGTCCTCCGAGAGACGAGTCCGAAACCCGGACAGATGACGCTCTCGGCGTACTCGGACTGAA
ACCTGCCAGCCCGGATTTCCCCTCGTAGGGGAAGCCCCGCCGTTTACGGCGGGGAGGATGTCAC
CCCGTTGCGCGTGGAGTAGCATCCCCTTCCACGTTAGACCGTGACGCTTCTTCGTCTCTTTCAGCGACTCGTACTGTTCTTCGTCTACCTCGAAGTTGAT
GTGGGGCATATCTCATTCTTTCTCCCCGTTACACTTAAGTTTATCTACGTTGTATCTACGGGTGTGTCCGAGACGGTGACGAAGACGCTACAGGCCACGC
TCGCAACGCCCACCACGGGCAAAGAGCAACGCCTACAGCGCCTCTTGGACACCTACCGCGAAGCACTCCACGACGCCTTCGACAACAGGGCGGATACAAT
GTCTGCCGTCAACGATGTTGTGACGCCCTACGACTTGCCGTATCAGGCCAAGGACGCGCTCAAGTCCTACGTCCCGAAGCTTCGGGATACGTACAACGCC
GAGGAGTTGGACGACGAACATCCAGCTCGGCTCGTCAATCGAGCGGCCACATTCGACCACTCGGCGGAGCGCGACCACGGCTTCGTCTGGCAGGTTCCGC
AACCCGGTCGCGGGACGAACTTCTGGATTCCGCTTCAGATCAACCCCGAACAGGAATCACTCTGGTTCGACCTGCTGAATGGGGACGTGACGGCGGGCGA
ACTACGCCTTCAGCGACACCGCACGTCGTGGGAGTTGCACGTCACCGTCGAATACTCGGTCGAAGAACCGACCGAGTCGGACGACCCGACGTACATCGGC
TTCGACGTCGGCGAGAGCGCGTTGATTACGGGCTGTGCCCTCAAACGCGACGTGCCACGGAAGCCGATGCTCGTCAGCGGCAGTCGAGCGCGACACCTTC
GCAAAGAGATGCATACCACGCTCAAGCGACTGCAAGAGCGTAACGCCGCTCAGTGGCGTGTGGACGAACGATTCGACCACTACCAGAACGCCCTGACAGA
TATTGTCGAGAAGGCGTCTCGGGAGGCCGTCGAATATGCCCGACAGTTCGAGGACGCGGTTATCGTCCTCGAAGACTTGTCGTACATCCGCGAGCATCTC
GACTACGGGAAGTGGATGAATCGCCGCCTCCACAACTGGGCGTTCGCCCGGCTACAGGGCCGCATCGAAGACAAAGCGGCCGAGGCAGGGATTCGCGTTG
AGTACGTCAACGCGGCATATACCTCGCAGACCTGCCACGCCTGCGGTCGTCTCGGTCGGCGAGATGAACAAGCGGAGTTTGTGTGTCCGCACGACGATTG
CCACGTCTCGAAGTTCCAAGCAGATATTAACGCGGCGGCGAACATCGCCGGTCGCGCTAACCCGTGGGGAGAGAGCGTCCGTTGGGAACCCGGACGCGAT
GACTCGCCTCGGGATGGGAGCGCCTGTGACAGCGCCACAGTCCTCCGAGAGACGAGTCCGAAACCCGGACAGATGACGCTCTCGGCGTACTCGGACTGAA
ACCTGCCAGCCCGGATTTCCCCTCGTAGGGGAAGCCCCGCCGTTTACGGCGGGGAGGATGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 264 | 1499 | + | No |
AG : TnpB
ORF sequence :
MSETVTKTLQATLATPTTGKEQRLQRLLDTYREALHDAFDNRADTMSAVNDVVTPYDLPYQAKDALKSYVPKLRDTYNAEELDDEHPARLVNRAATFDHS
AERDHGFVWQVPQPGRGTNFWIPLQINPEQESLWFDLLNGDVTAGELRLQRHRTSWELHVTVEYSVEEPTESDDPTYIGFDVGESALITGCALKRDVPRK
PMLVSGSRARHLRKEMHTTLKRLQERNAAQWRVDERFDHYQNALTDIVEKASREAVEYARQFEDAVIVLEDLSYIREHLDYGKWMNRRLHNWAFARLQGR
IEDKAAEAGIRVEYVNAAYTSQTCHACGRLGRRDEQAEFVCPHDDCHVSKFQADINAAANIAGRANPWGESVRWEPGRDDSPRDGSACDSATVLRETSPK
PGQMTLSAYSD
AERDHGFVWQVPQPGRGTNFWIPLQINPEQESLWFDLLNGDVTAGELRLQRHRTSWELHVTVEYSVEEPTESDDPTYIGFDVGESALITGCALKRDVPRK
PMLVSGSRARHLRKEMHTTLKRLQERNAAQWRVDERFDHYQNALTDIVEKASREAVEYARQFEDAVIVLEDLSYIREHLDYGKWMNRRLHNWAFARLQGR
IEDKAAEAGIRVEYVNAAYTSQTCHACGRLGRRDEQAEFVCPHDDCHVSKFQADINAAANIAGRANPWGESVRWEPGRDDSPRDGSACDSATVLRETSPK
PGQMTLSAYSD
Blast result :
Comments
ISHhu6 is 84% aa (ORFB) similar to ISNamo19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130