ISHhu5
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense |
DNA section
IS Length : 1400 bp
Ends
Left end : AGCGGGACAGCGCGGAAGCCCACCCCTTTAGGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGCCAACCCACCGATGATGGCGGGGCCGACTCCCCAACACA II struct. : Yes
Right end : GGGACGTTGAACGTAAGCGACACATCTAGTGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGATTGCTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGTTCGAGGATC | TCAC | ACACCACGTGCA | tgac |
DNA sequence
AGCGGGACAGCGCGGAAGCCCACCCCTTTAGGGGTGGGAGGAAGCGCGTAAGCTCCGTGGGCCAACCCACCGATGATGGCGGGGCCGACTCCCCAACACA
GACACAGAATACATAAACAAAGCGGCCGCATGTGAGACTGCGATGGAGGTCAAACGTACCGTTCCCATCAAACTCGGCGTACCCGAGGAGCGGCGCGACG
ACCTCCATCAGACCATCCAGCAGTTCAACACTGCCGCCAACTACACCATCGACCACGGCAGAGACGACGACGGCGACCTGATTCTCAACAAGTCCACCAT
CCACGACGAAGTGTACCACGACTTGCGGGACAGAACCGACCTGCCCGCAAACCTCGTGGTACGCGCCTACTCGAAAGCCGTCGAAGCGATGAAATCCACC
GTCGCGGACTGGGAGAACGGCAACAGCAGACCGCTCCCCTCGTTCGATGAACCGTCTGCCGTCTACGATAAACGCACCCTGACTATCAAGGACGAGTACG
CCACACTCTCGACGGTCAACGGGCGCGTCGAAGCCGACTTCGTGCTTGGTGAGTACCAGCGGTCGTACCTTGAAGACGACGACTACGAGCGCCGGATGGG
AACGCTCCATTACCGTCCCGACGAGGAGGCGTTCTACCTTCACGTCGTCATCCAGAAAGAGGTAGACCAGCGCGACGGCGAGCGCGTGCTTGGCGTGGAT
TTGAACCTCAAGAACGTCGCCGTGACCAGCACGGGACGGTTCTTTGACGGCGGCGAGCTGCTGTGGGGGCAGAACCACTACTTCCGCGTGCGACGGAGCC
TTCAGAACAAAGGCACACGCTCCGCCAAGCAGGTGTTACGGCGACTGTCGGGGCGTGAAAATCGCTTCGTCCTGAACCGCCTGCACACCATCTCGCGCGG
AATTGTGGAAGAAGCCCTGCGACACGACTGCTCGTACATCGCCGTCGAAGATCTGACCCACATCCGCTCGCGGATGGACGCCCACGACGACCGTCTGAAG
CGGCAGATGCACAACTGGGCGTTCCGCGAGCTACAGGAGCAAATCGAATACAAGGCCGCCGAGTATGGGATTCGAGTCGAGTCGGTCAATCCGGCGTTTT
CCTCGCAGACGTGCTCGAAGTGTGGCCACCAGTCCAGCACGAATCGCGACAGCGAGACGGGCTGGTTCGTGTGCAACGAGTGTGGGTACGAGGTGGACGG
TGATTACAACGCGGCGAAGAACGTCGGCCTTCGGTTGTTAGCTTTACCACCGGGCAAACGCCCCGATGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTCG
GGGACGTTGAACGTAAGCGACACATCTAGTGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGATTGCTGAC
GACACAGAATACATAAACAAAGCGGCCGCATGTGAGACTGCGATGGAGGTCAAACGTACCGTTCCCATCAAACTCGGCGTACCCGAGGAGCGGCGCGACG
ACCTCCATCAGACCATCCAGCAGTTCAACACTGCCGCCAACTACACCATCGACCACGGCAGAGACGACGACGGCGACCTGATTCTCAACAAGTCCACCAT
CCACGACGAAGTGTACCACGACTTGCGGGACAGAACCGACCTGCCCGCAAACCTCGTGGTACGCGCCTACTCGAAAGCCGTCGAAGCGATGAAATCCACC
GTCGCGGACTGGGAGAACGGCAACAGCAGACCGCTCCCCTCGTTCGATGAACCGTCTGCCGTCTACGATAAACGCACCCTGACTATCAAGGACGAGTACG
CCACACTCTCGACGGTCAACGGGCGCGTCGAAGCCGACTTCGTGCTTGGTGAGTACCAGCGGTCGTACCTTGAAGACGACGACTACGAGCGCCGGATGGG
AACGCTCCATTACCGTCCCGACGAGGAGGCGTTCTACCTTCACGTCGTCATCCAGAAAGAGGTAGACCAGCGCGACGGCGAGCGCGTGCTTGGCGTGGAT
TTGAACCTCAAGAACGTCGCCGTGACCAGCACGGGACGGTTCTTTGACGGCGGCGAGCTGCTGTGGGGGCAGAACCACTACTTCCGCGTGCGACGGAGCC
TTCAGAACAAAGGCACACGCTCCGCCAAGCAGGTGTTACGGCGACTGTCGGGGCGTGAAAATCGCTTCGTCCTGAACCGCCTGCACACCATCTCGCGCGG
AATTGTGGAAGAAGCCCTGCGACACGACTGCTCGTACATCGCCGTCGAAGATCTGACCCACATCCGCTCGCGGATGGACGCCCACGACGACCGTCTGAAG
CGGCAGATGCACAACTGGGCGTTCCGCGAGCTACAGGAGCAAATCGAATACAAGGCCGCCGAGTATGGGATTCGAGTCGAGTCGGTCAATCCGGCGTTTT
CCTCGCAGACGTGCTCGAAGTGTGGCCACCAGTCCAGCACGAATCGCGACAGCGAGACGGGCTGGTTCGTGTGCAACGAGTGTGGGTACGAGGTGGACGG
TGATTACAACGCGGCGAAGAACGTCGGCCTTCGGTTGTTAGCTTTACCACCGGGCAAACGCCCCGATGGGTTGGGCAACGGTCAGCTTGCCCTGAAGTCG
GGGACGTTGAACGTAAGCGACACATCTAGTGTCCACTCCAGCTTGGAGTTTGAACGGGAGTCCACCGACAAGCCCACCGCTTCAGCGGTGGATTGCTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 143 | 1399 | + | No |
AG : TnpB
ORF sequence :
MEVKRTVPIKLGVPEERRDDLHQTIQQFNTAANYTIDHGRDDDGDLILNKSTIHDEVYHDLRDRTDLPANLVVRAYSKAVEAMKSTVADWENGNSRPLPS
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEADFVLGEYQRSYLEDDDYERRMGTLHYRPDEEAFYLHVVIQKEVDQRDGERVLGVDLNLKNVAVTSTGRF
FDGGELLWGQNHYFRVRRSLQNKGTRSAKQVLRRLSGRENRFVLNRLHTISRGIVEEALRHDCSYIAVEDLTHIRSRMDAHDDRLKRQMHNWAFRELQEQ
IEYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDSETGWFVCNECGYEVDGDYNAAKNVGLRLLALPPGKRPDGLGNGQLALKSGTLNVSDTSSVHSS
LEFERESTDKPTASAVDC
FDEPSAVYDKRTLTIKDEYATLSTVNGRVEADFVLGEYQRSYLEDDDYERRMGTLHYRPDEEAFYLHVVIQKEVDQRDGERVLGVDLNLKNVAVTSTGRF
FDGGELLWGQNHYFRVRRSLQNKGTRSAKQVLRRLSGRENRFVLNRLHTISRGIVEEALRHDCSYIAVEDLTHIRSRMDAHDDRLKRQMHNWAFRELQEQ
IEYKAAEYGIRVESVNPAFSSQTCSKCGHQSSTNRDSETGWFVCNECGYEVDGDYNAAKNVGLRLLALPPGKRPDGLGNGQLALKSGTLNVSDTSSVHSS
LEFERESTDKPTASAVDC
Blast result :
Comments
ISHhu5 is 58% aa (ORFB) similar to ISHvo19.
References
1] F. Pfeiffer (2013) Direct submission
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130