ISHarch1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002989 | ND | Halophilic archaeon | Halophilic archaeon DL31 |
DNA section
IS Length : 1384 bp
Ends
Left end : AGAAAGTGCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAAATGGGAAACAAACCACGCAACGATGACAGTCCGACTCCCTAGCATTTA II struct. : Yes
Right end : GCGGGACGTTGAACGTGAATGGAGGCTATTCTCCTGCCGATGATTCGGCCAGAACGGGAGTCCACGCTGAATCCCACCCCTTTACGCGTGGATAGCTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GATCCCGGAATC | TTAT | AGGCCGGTCGTT | tcaa |
DNA sequence
AGAAAGTGCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAAATGGGAAACAAACCACGCAACGATGACAGTCCGACTCCCTAGCATTTA
AGAACCATCGCAACTACATATAAATATGGATGTGCGGCGTACCGTCTCCGTTGCGCTCGATGTGGACAGCCACGACGCCGCACTCCTCGAAGACACCGTC
GACACCTTCCTGTGGTGCGCTCAATACGTCTCAGACCACGCTTTCGAGGGTGAATACGTCACCACCAGCAAAACCACGCTGGACGATGAAACCTACGACG
ACGTGCGCGAAGCGACAGACGGTTTCAACGGTGGGCTGGTGCAAGCCGCTCGCAACAAGGCCGCCGAAGCCTGCAAGAGTGTCGTCGCCAGGTGGAAACA
GGGCAAGAAAGCCTCGAAACCCCACTTCACCAGTCCACACGTCGTCTACGACCACCGGACTGCTACCTTCCACGACGAGTACGTGAGCCTCGCCACAGTC
GATGGCCGAATTGAAGCCGATTACGTACTGCCAGATGCAAGCAGTGACACGCCCCACGCGGAATACTTCTTTTCTGACGAGTACGAAACCACGGGGGCAG
AGCTACACTACACGAGCGGCAACTGGATGCTTCACGTCCACTGCAAGAAGGACGTGGAGAGTGACACGCCGGACGGGGAAACCACCGAGAACGGAACGGT
TCTCGGGGTTGACCTCGGCGTGAACAATCTTGCTGTTGCCTCAACTGGCACGTTTTGGACTGGCAACGAGTTCGACCACTGGCGACGAGAATACGAGAAG
CGGCGTGGTGAATTGCAGGAACACGGTACCCGATGGGCACACGAGAATATCCAGTCTGTTGGTCGCAAAGAAGACGGTCGGTTCACGCTGACACTCCACC
GAATCAGCAACGAACTCGTTGCTGAAGCTTGTGACCACGGGTGTTCACTGATAGCGTTCGAGGACTTGACCGACATTCGTGACCGCACTGGTGCATCGTG
GGGACATAAGTGGGCGTTCAACCGGCTCTACGAGTACGTCGAGTACAAGGCCAGAGAGTACGGTATCAGCGTCGCACAGGTGGCTCCTGAGAACACGTCA
CGGCGGTGTTCTCACTGTGGGTTTACGCACCCGGACAACCGCAACGGTGAGGAGTTCGAGTGCTTGAAATGCGGCTACGAGAATCACGCCGACTACAACG
CCGCCAAGAACATCGGTCTACGGTATCTCCGTCGTAACCAAACTGGGGACGGCGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGTTGAACGT
GAATGGAGGCTATTCTCCTGCCGATGATTCGGCCAGAACGGGAGTCCACGCTGAATCCCACCCCTTTACGCGTGGATAGCTCAA
AGAACCATCGCAACTACATATAAATATGGATGTGCGGCGTACCGTCTCCGTTGCGCTCGATGTGGACAGCCACGACGCCGCACTCCTCGAAGACACCGTC
GACACCTTCCTGTGGTGCGCTCAATACGTCTCAGACCACGCTTTCGAGGGTGAATACGTCACCACCAGCAAAACCACGCTGGACGATGAAACCTACGACG
ACGTGCGCGAAGCGACAGACGGTTTCAACGGTGGGCTGGTGCAAGCCGCTCGCAACAAGGCCGCCGAAGCCTGCAAGAGTGTCGTCGCCAGGTGGAAACA
GGGCAAGAAAGCCTCGAAACCCCACTTCACCAGTCCACACGTCGTCTACGACCACCGGACTGCTACCTTCCACGACGAGTACGTGAGCCTCGCCACAGTC
GATGGCCGAATTGAAGCCGATTACGTACTGCCAGATGCAAGCAGTGACACGCCCCACGCGGAATACTTCTTTTCTGACGAGTACGAAACCACGGGGGCAG
AGCTACACTACACGAGCGGCAACTGGATGCTTCACGTCCACTGCAAGAAGGACGTGGAGAGTGACACGCCGGACGGGGAAACCACCGAGAACGGAACGGT
TCTCGGGGTTGACCTCGGCGTGAACAATCTTGCTGTTGCCTCAACTGGCACGTTTTGGACTGGCAACGAGTTCGACCACTGGCGACGAGAATACGAGAAG
CGGCGTGGTGAATTGCAGGAACACGGTACCCGATGGGCACACGAGAATATCCAGTCTGTTGGTCGCAAAGAAGACGGTCGGTTCACGCTGACACTCCACC
GAATCAGCAACGAACTCGTTGCTGAAGCTTGTGACCACGGGTGTTCACTGATAGCGTTCGAGGACTTGACCGACATTCGTGACCGCACTGGTGCATCGTG
GGGACATAAGTGGGCGTTCAACCGGCTCTACGAGTACGTCGAGTACAAGGCCAGAGAGTACGGTATCAGCGTCGCACAGGTGGCTCCTGAGAACACGTCA
CGGCGGTGTTCTCACTGTGGGTTTACGCACCCGGACAACCGCAACGGTGAGGAGTTCGAGTGCTTGAAATGCGGCTACGAGAATCACGCCGACTACAACG
CCGCCAAGAACATCGGTCTACGGTATCTCCGTCGTAACCAAACTGGGGACGGCGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGTTGAACGT
GAATGGAGGCTATTCTCCTGCCGATGATTCGGCCAGAACGGGAGTCCACGCTGAATCCCACCCCTTTACGCGTGGATAGCTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 126 | 1379 | + | No |
AG : TnpB
ORF sequence :
MDVRRTVSVALDVDSHDAALLEDTVDTFLWCAQYVSDHAFEGEYVTTSKTTLDDETYDDVREATDGFNGGLVQAARNKAAEACKSVVARWKQGKKASKPH
FTSPHVVYDHRTATFHDEYVSLATVDGRIEADYVLPDASSDTPHAEYFFSDEYETTGAELHYTSGNWMLHVHCKKDVESDTPDGETTENGTVLGVDLGVN
NLAVASTGTFWTGNEFDHWRREYEKRRGELQEHGTRWAHENIQSVGRKEDGRFTLTLHRISNELVAEACDHGCSLIAFEDLTDIRDRTGASWGHKWAFNR
LYEYVEYKAREYGISVAQVAPENTSRRCSHCGFTHPDNRNGEEFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPLGVRLNSGTLNVNGGYSPAD
DSARTGVHAESHPFTRG
FTSPHVVYDHRTATFHDEYVSLATVDGRIEADYVLPDASSDTPHAEYFFSDEYETTGAELHYTSGNWMLHVHCKKDVESDTPDGETTENGTVLGVDLGVN
NLAVASTGTFWTGNEFDHWRREYEKRRGELQEHGTRWAHENIQSVGRKEDGRFTLTLHRISNELVAEACDHGCSLIAFEDLTDIRDRTGASWGHKWAFNR
LYEYVEYKAREYGISVAQVAPENTSRRCSHCGFTHPDNRNGEEFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPLGVRLNSGTLNVNGGYSPAD
DSARTGVHAESHPFTRG
Blast result :
Comments
ISHarch1 is 86% aa similar (ORFB) to ISNph22.
References
1] Friedhelm Pfeiffer (2014) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct GenBank submission.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct GenBank submission.