ISHarch1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002989 ND Halophilic archaeon
Halophilic archaeon DL31
DNA section
IS Length : 1384 bp

Ends


Left end : AGAAAGTGCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAAATGGGAAACAAACCACGCAACGATGACAGTCCGACTCCCTAGCATTTA II struct. : Yes
Right end : GCGGGACGTTGAACGTGAATGGAGGCTATTCTCCTGCCGATGATTCGGCCAGAACGGGAGTCCACGCTGAATCCCACCCCTTTACGCGTGGATAGCTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GATCCCGGAATCTTATAGGCCGGTCGTTtcaa

DNA sequence

AGAAAGTGCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAAATGGGAAACAAACCACGCAACGATGACAGTCCGACTCCCTAGCATTTA
AGAACCATCGCAACTACATATAAATATGGATGTGCGGCGTACCGTCTCCGTTGCGCTCGATGTGGACAGCCACGACGCCGCACTCCTCGAAGACACCGTC
GACACCTTCCTGTGGTGCGCTCAATACGTCTCAGACCACGCTTTCGAGGGTGAATACGTCACCACCAGCAAAACCACGCTGGACGATGAAACCTACGACG
ACGTGCGCGAAGCGACAGACGGTTTCAACGGTGGGCTGGTGCAAGCCGCTCGCAACAAGGCCGCCGAAGCCTGCAAGAGTGTCGTCGCCAGGTGGAAACA
GGGCAAGAAAGCCTCGAAACCCCACTTCACCAGTCCACACGTCGTCTACGACCACCGGACTGCTACCTTCCACGACGAGTACGTGAGCCTCGCCACAGTC
GATGGCCGAATTGAAGCCGATTACGTACTGCCAGATGCAAGCAGTGACACGCCCCACGCGGAATACTTCTTTTCTGACGAGTACGAAACCACGGGGGCAG
AGCTACACTACACGAGCGGCAACTGGATGCTTCACGTCCACTGCAAGAAGGACGTGGAGAGTGACACGCCGGACGGGGAAACCACCGAGAACGGAACGGT
TCTCGGGGTTGACCTCGGCGTGAACAATCTTGCTGTTGCCTCAACTGGCACGTTTTGGACTGGCAACGAGTTCGACCACTGGCGACGAGAATACGAGAAG
CGGCGTGGTGAATTGCAGGAACACGGTACCCGATGGGCACACGAGAATATCCAGTCTGTTGGTCGCAAAGAAGACGGTCGGTTCACGCTGACACTCCACC
GAATCAGCAACGAACTCGTTGCTGAAGCTTGTGACCACGGGTGTTCACTGATAGCGTTCGAGGACTTGACCGACATTCGTGACCGCACTGGTGCATCGTG
GGGACATAAGTGGGCGTTCAACCGGCTCTACGAGTACGTCGAGTACAAGGCCAGAGAGTACGGTATCAGCGTCGCACAGGTGGCTCCTGAGAACACGTCA
CGGCGGTGTTCTCACTGTGGGTTTACGCACCCGGACAACCGCAACGGTGAGGAGTTCGAGTGCTTGAAATGCGGCTACGAGAATCACGCCGACTACAACG
CCGCCAAGAACATCGGTCTACGGTATCTCCGTCGTAACCAAACTGGGGACGGCGGAGGCGCACCCTTGGGCGTGCGCTTGAACAGCGGGACGTTGAACGT
GAATGGAGGCTATTCTCCTGCCGATGATTCGGCCAGAACGGGAGTCCACGCTGAATCCCACCCCTTTACGCGTGGATAGCTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1261379+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MDVRRTVSVALDVDSHDAALLEDTVDTFLWCAQYVSDHAFEGEYVTTSKTTLDDETYDDVREATDGFNGGLVQAARNKAAEACKSVVARWKQGKKASKPH
FTSPHVVYDHRTATFHDEYVSLATVDGRIEADYVLPDASSDTPHAEYFFSDEYETTGAELHYTSGNWMLHVHCKKDVESDTPDGETTENGTVLGVDLGVN
NLAVASTGTFWTGNEFDHWRREYEKRRGELQEHGTRWAHENIQSVGRKEDGRFTLTLHRISNELVAEACDHGCSLIAFEDLTDIRDRTGASWGHKWAFNR
LYEYVEYKAREYGISVAQVAPENTSRRCSHCGFTHPDNRNGEEFECLKCGYENHADYNAAKNIGLRYLRRNQTGDGGGAPLGVRLNSGTLNVNGGYSPAD
DSARTGVHAESHPFTRG

 

Blast result :
Comments
ISHarch1 is 86% aa similar (ORFB) to ISNph22.
References
1] Friedhelm Pfeiffer (2014) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Mikhailova,N., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Dyall-Smith,M., Cavicchioli,R. and Woyke,T. (2011) Direct GenBank submission.