ISDha16
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007907 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 Desulfitobacterium hafniense Y51 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 13
IRL : CTATAAATGAGCAAAAATGCTTCCATTGTTTTTCCAAAAATAAAAAAGAG
IRR : CTATAAATGAGCATTTTTCATAACAAATATTTACAGAGGAGGGATTAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAATTATGAT | C/TTATGAA | GAAATTATTG | 9 |
AGCTGTGAATAACTTATGAA | CTATGAAGTAAAATCGCTTA | 0 | |
TTATAACTGG | TTTAAG | AATAAAAAGT | 6 |
GAAGAATAAC | TTATAAA | CTTAAAACTC | 7 |
AAAAAATAAT | AAATAA | GTTAAAGAAA | 6 |
AAAAAATATA | AAATCAG | GTCAGAAACT | 7 |
GTTAGTAAAC | TTTAAAG | ATTGAATCAC | 7 |
DNA sequence
CTATAAATGAGCAAAAATGCTTCCATTGTTTTTCCAAAAATAAAAAAGAGACACTCTGCTTCCTTCTGTGGTATAAAATAAGTCTACCACAACCAATCCA
TCCCAAGGAGGAAGCCAATGTCTCATAGCACTATCTTACCAAAAAACGAAGCAATGTTCAATTTCTTTAAAAGCCATCGACTGCCCTTATATTTCTCAAA
GCCTGTTTTACGACATATTCAAGAATTTATTGTAGCGGCCACGGCTAAAGGATATCGTGGTAAGATAGTCGACATCGCGGAGTGGAGTTCGGTTCATCGA
ACCTCTATTGGTCATTTCCTCTCTCATGGGGTATGGGATGAATCTTATATCCAGAAAATTGTTAAACAGGAATCTCTTCAGTTTGTCGTAGCCCACTCCC
AAAAGACGGAGCAGCCCATCTTTGTGATTCATGATGATACTGTTTGCAATAAGACGAAACCTTCGTCACAGGCACAACGTCCCATCGAGCAAGCAGATTT
CCATTTTTCGCACTTAGAGGGTAAGAGTGTTTGGGGGCATCAGGTTCAAGCAACCCTTGTTCAATGCGGTGACCACTCGCTCATTCATGATGTTCATCAA
TACGATAAAACCAAGCTAAGCAAAATTGATGACGCTTGTGAATTGGCTAAGACCATGGCGATTCCCCCTAAGTCAGGCTATGCCTTGGTTGATTCTTGGT
ATACCTGCGCCAAGCTGATTAACACCTATGCTGCACGAGGATACCAGCTGATTGGAGCTCTTAAAACCAACCGCATTCTCTATCCCCAAGGGATTCGTGT
TCGTCTCGATACCTTTGCCTCCTATGTGAACCCAAAGGAAGTTCACCTTGTGACCGTGAACGGTTCATCCTACTGGGTTTATCGCTATGAAGGGGCTCTA
AACGATATTGAGAATGCCGTAGTGCTGTTTTGTTGGCCTAAAGATGCTTTTCAGGTGTCTAAAGCCTTGCATGCCTTTTTGTGCACCGATGTTTCATTAG
AAACACAAACTATTTTGGCTTACTACAGTAAGAGATGGCCCATTGAGATCTTCTTTCGGCAAGCCAAGGGAAATCTTGGTTTTAACGGCTACCAAGTACG
CTCAATCCGTTCCATCGAAAGATTCTGGGCTCTACTTTCTTTCACTCATTTGTACTGCACCATGGGTTTAGGGAAGCCGCTGCTCTTTGGTGAAGGATTG
CGGAAAGTCCGAAAAGAGGTAAAAGGGCAATACATTCGATGGATTTATGAGTGTAGTAGAAATGGAGTGCCTTTGGAAGATGTTTTAAAACGTCTTAAAG
CTGCATAGGGGGAAGTCTAATCCCTCCTCTGTAAATATTTGTTATGAAAAATGCTCATTTATAG
TCCCAAGGAGGAAGCCAATGTCTCATAGCACTATCTTACCAAAAAACGAAGCAATGTTCAATTTCTTTAAAAGCCATCGACTGCCCTTATATTTCTCAAA
GCCTGTTTTACGACATATTCAAGAATTTATTGTAGCGGCCACGGCTAAAGGATATCGTGGTAAGATAGTCGACATCGCGGAGTGGAGTTCGGTTCATCGA
ACCTCTATTGGTCATTTCCTCTCTCATGGGGTATGGGATGAATCTTATATCCAGAAAATTGTTAAACAGGAATCTCTTCAGTTTGTCGTAGCCCACTCCC
AAAAGACGGAGCAGCCCATCTTTGTGATTCATGATGATACTGTTTGCAATAAGACGAAACCTTCGTCACAGGCACAACGTCCCATCGAGCAAGCAGATTT
CCATTTTTCGCACTTAGAGGGTAAGAGTGTTTGGGGGCATCAGGTTCAAGCAACCCTTGTTCAATGCGGTGACCACTCGCTCATTCATGATGTTCATCAA
TACGATAAAACCAAGCTAAGCAAAATTGATGACGCTTGTGAATTGGCTAAGACCATGGCGATTCCCCCTAAGTCAGGCTATGCCTTGGTTGATTCTTGGT
ATACCTGCGCCAAGCTGATTAACACCTATGCTGCACGAGGATACCAGCTGATTGGAGCTCTTAAAACCAACCGCATTCTCTATCCCCAAGGGATTCGTGT
TCGTCTCGATACCTTTGCCTCCTATGTGAACCCAAAGGAAGTTCACCTTGTGACCGTGAACGGTTCATCCTACTGGGTTTATCGCTATGAAGGGGCTCTA
AACGATATTGAGAATGCCGTAGTGCTGTTTTGTTGGCCTAAAGATGCTTTTCAGGTGTCTAAAGCCTTGCATGCCTTTTTGTGCACCGATGTTTCATTAG
AAACACAAACTATTTTGGCTTACTACAGTAAGAGATGGCCCATTGAGATCTTCTTTCGGCAAGCCAAGGGAAATCTTGGTTTTAACGGCTACCAAGTACG
CTCAATCCGTTCCATCGAAAGATTCTGGGCTCTACTTTCTTTCACTCATTTGTACTGCACCATGGGTTTAGGGAAGCCGCTGCTCTTTGGTGAAGGATTG
CGGAAAGTCCGAAAAGAGGTAAAAGGGCAATACATTCGATGGATTTATGAGTGTAGTAGAAATGGAGTGCCTTTGGAAGATGTTTTAAAACGTCTTAAAG
CTGCATAGGGGGAAGTCTAATCCCTCCTCTGTAAATATTTGTTATGAAAAATGCTCATTTATAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1191 bp | 396 aa | 118 | 1308 | + | No |
Chemistry : DDE
ORF sequence :
MSHSTILPKNEAMFNFFKSHRLPLYFSKPVLRHIQEFIVAATAKGYRGKIVDIAEWSSVHRTSIGHFLSHGVWDESYIQKIVKQESLQFVVAHSQKTEQP
IFVIHDDTVCNKTKPSSQAQRPIEQADFHFSHLEGKSVWGHQVQATLVQCGDHSLIHDVHQYDKTKLSKIDDACELAKTMAIPPKSGYALVDSWYTCAKL
INTYAARGYQLIGALKTNRILYPQGIRVRLDTFASYVNPKEVHLVTVNGSSYWVYRYEGALNDIENAVVLFCWPKDAFQVSKALHAFLCTDVSLETQTIL
AYYSKRWPIEIFFRQAKGNLGFNGYQVRSIRSIERFWALLSFTHLYCTMGLGKPLLFGEGLRKVRKEVKGQYIRWIYECSRNGVPLEDVLKRLKAA
IFVIHDDTVCNKTKPSSQAQRPIEQADFHFSHLEGKSVWGHQVQATLVQCGDHSLIHDVHQYDKTKLSKIDDACELAKTMAIPPKSGYALVDSWYTCAKL
INTYAARGYQLIGALKTNRILYPQGIRVRLDTFASYVNPKEVHLVTVNGSSYWVYRYEGALNDIENAVVLFCWPKDAFQVSKALHAFLCTDVSLETQTIL
AYYSKRWPIEIFFRQAKGNLGFNGYQVRSIRSIERFWALLSFTHLYCTMGLGKPLLFGEGLRKVRKEVKGQYIRWIYECSRNGVPLEDVLKRLKAA
Blast result :
Comments
ISDha16 is 50% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274.
3] Kim,S.H., Harzman,C., Davis,J.K., Hutcheson,R., Broderick,J.B., Marsh,T.L. and Tiedje,J.M. (2012) BMC Microbiol. 12, 21.
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274.
3] Kim,S.H., Harzman,C., Davis,J.K., Hutcheson,R., Broderick,J.B., Marsh,T.L. and Tiedje,J.M. (2012) BMC Microbiol. 12, 21.