ISDha16

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007907 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense DCB-2
Desulfitobacterium hafniense Y51
DNA section
IS Length : 1364 bp

Ends


IR Length : 13

IRL : CTATAAATGAGCAAAAATGCTTCCATTGTTTTTCCAAAAATAAAAAAGAG
IRR : CTATAAATGAGCATTTTTCATAACAAATATTTACAGAGGAGGGATTAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
AAATTATGATC/TTATGAAGAAATTATTG9
AGCTGTGAATAACTTATGAACTATGAAGTAAAATCGCTTA0
TTATAACTGGTTTAAGAATAAAAAGT6
GAAGAATAACTTATAAACTTAAAACTC7
AAAAAATAATAAATAAGTTAAAGAAA6
AAAAAATATAAAATCAGGTCAGAAACT7
GTTAGTAAACTTTAAAGATTGAATCAC7

DNA sequence

CTATAAATGAGCAAAAATGCTTCCATTGTTTTTCCAAAAATAAAAAAGAGACACTCTGCTTCCTTCTGTGGTATAAAATAAGTCTACCACAACCAATCCA
TCCCAAGGAGGAAGCCAATGTCTCATAGCACTATCTTACCAAAAAACGAAGCAATGTTCAATTTCTTTAAAAGCCATCGACTGCCCTTATATTTCTCAAA
GCCTGTTTTACGACATATTCAAGAATTTATTGTAGCGGCCACGGCTAAAGGATATCGTGGTAAGATAGTCGACATCGCGGAGTGGAGTTCGGTTCATCGA
ACCTCTATTGGTCATTTCCTCTCTCATGGGGTATGGGATGAATCTTATATCCAGAAAATTGTTAAACAGGAATCTCTTCAGTTTGTCGTAGCCCACTCCC
AAAAGACGGAGCAGCCCATCTTTGTGATTCATGATGATACTGTTTGCAATAAGACGAAACCTTCGTCACAGGCACAACGTCCCATCGAGCAAGCAGATTT
CCATTTTTCGCACTTAGAGGGTAAGAGTGTTTGGGGGCATCAGGTTCAAGCAACCCTTGTTCAATGCGGTGACCACTCGCTCATTCATGATGTTCATCAA
TACGATAAAACCAAGCTAAGCAAAATTGATGACGCTTGTGAATTGGCTAAGACCATGGCGATTCCCCCTAAGTCAGGCTATGCCTTGGTTGATTCTTGGT
ATACCTGCGCCAAGCTGATTAACACCTATGCTGCACGAGGATACCAGCTGATTGGAGCTCTTAAAACCAACCGCATTCTCTATCCCCAAGGGATTCGTGT
TCGTCTCGATACCTTTGCCTCCTATGTGAACCCAAAGGAAGTTCACCTTGTGACCGTGAACGGTTCATCCTACTGGGTTTATCGCTATGAAGGGGCTCTA
AACGATATTGAGAATGCCGTAGTGCTGTTTTGTTGGCCTAAAGATGCTTTTCAGGTGTCTAAAGCCTTGCATGCCTTTTTGTGCACCGATGTTTCATTAG
AAACACAAACTATTTTGGCTTACTACAGTAAGAGATGGCCCATTGAGATCTTCTTTCGGCAAGCCAAGGGAAATCTTGGTTTTAACGGCTACCAAGTACG
CTCAATCCGTTCCATCGAAAGATTCTGGGCTCTACTTTCTTTCACTCATTTGTACTGCACCATGGGTTTAGGGAAGCCGCTGCTCTTTGGTGAAGGATTG
CGGAAAGTCCGAAAAGAGGTAAAAGGGCAATACATTCGATGGATTTATGAGTGTAGTAGAAATGGAGTGCCTTTGGAAGATGTTTTAAAACGTCTTAAAG
CTGCATAGGGGGAAGTCTAATCCCTCCTCTGTAAATATTTGTTATGAAAAATGCTCATTTATAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1191 bp396 aa1181308+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHSTILPKNEAMFNFFKSHRLPLYFSKPVLRHIQEFIVAATAKGYRGKIVDIAEWSSVHRTSIGHFLSHGVWDESYIQKIVKQESLQFVVAHSQKTEQP
IFVIHDDTVCNKTKPSSQAQRPIEQADFHFSHLEGKSVWGHQVQATLVQCGDHSLIHDVHQYDKTKLSKIDDACELAKTMAIPPKSGYALVDSWYTCAKL
INTYAARGYQLIGALKTNRILYPQGIRVRLDTFASYVNPKEVHLVTVNGSSYWVYRYEGALNDIENAVVLFCWPKDAFQVSKALHAFLCTDVSLETQTIL
AYYSKRWPIEIFFRQAKGNLGFNGYQVRSIRSIERFWALLSFTHLYCTMGLGKPLLFGEGLRKVRKEVKGQYIRWIYECSRNGVPLEDVLKRLKAA

 

Blast result :
Comments
ISDha16 is 50% aa similar to ISCth16.
References
1] ISfinder submission (2012)
2] Nonaka,H., Keresztes,G., Shinoda,Y., Ikenaga,Y., Abe,M., Naito,K., Inatomi,K., Furukawa,K., Inui,M. and Yukawa,H. (2006) J. Bacteriol. 188 (6), 2262-2274.
3] Kim,S.H., Harzman,C., Davis,J.K., Hutcheson,R., Broderick,J.B., Marsh,T.L. and Tiedje,J.M. (2012) BMC Microbiol. 12, 21.