ISBj12
- Family ISNCY
- Group ISLbi1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| BA000040 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 1743 bp
Ends
IR Length : 12/15
IRL : CGCATTGCCTCGCCTTAATTGTTACCGGATCCTAAGCCGTTGCCTCACGT
IRR : CGTATTGCCTCACATATCGATGCTCCCGGGCGCGATCAGTTGCCTCATTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CAATCAAAGC | TCTTCCGACC | 0 |
DNA sequence
CGCATTGCCTCGCCTTAATTGTTACCGGATCCTAAGCCGTTGCCTCACGTAAATTGCTCCCCTGGACCGGGAACGAGCGAGGGGCGGAGATGGGGTGGCT
AAGCATGGCAACGCGGAAGGAACTGACGGCGGCGGCAGGCGTGCGCTATCGGCGGTCGGATCGCGCGAAGAAGGCGCGGATATTGGACGAGTTCGTCGAC
ATCACCGGATTCCATCGGAAGCATGCGATGCGTCTACTTCGAAACCAGGAAGGCGTACATCCGGGCCGACGGGCGCGACGTCGGATATATAATGAAGCAG
AACACACCGCACTCGTGCTGCTTTGGGAGGCGTCAGACCGCATCTGCGGGAAGCGACTGAAAGCATTAATGCCCGCGCTGATTGAGGCGATGGAACGGTA
CGGGCACCTCGACCTTGCCCCTGAGATTCGCACCAAACTTTTGGCGATGAGCGCTGCGACGATCGACCGCGCCTTGGTGCGGGTTCGAGAAAAATTGGGT
CGCAAGCGCCGGCGGCACGCGGGGCATTCCCTGCGTCGCAGTATTCCAATACGGACTTCGGCAGATTGGAATGATCCGGCGCCGGGATTCGTCGAGGCCG
ACCTTGTAGCGCATAGCGGTCCATCTGCGCGCGGCAGCTTCATCCAGACCCTCGTGCTCACCGACATTGCTACCGGCTGGACAGAGTGCGCACCTCTGAT
CGTGCGCGAACAGACGCTGGTGAGCACGGTGCTGACGGAATTGCGCAAGCAATTGCCTTTTGCGCTGCTCGGCTTCGACACGGACAATGACACCGTGTTC
ATGAATGAGACGTTGAAGGCCTACTGCGAGGCGGCCAACATTGTCTTCACGCGTTGCCGTCCCTACCGGAAGAATGACCAGGCGTTCGTCGAGCAAAAGA
ACGGCGCCGTCGTGCGCAGGATGGTCGGCTATCGTAGGTTCGAAGGCCTGGAGGCGGCCAAGCTACTGGCGGAACTCTATCGGTCAGCGCGGCTGTTCGT
AAACTTCTTCCAACCTTCGTTCAAACTGTTAGCCAAGCAGCGCGACGGTGCTCGTGTACGTAAGACATACAGCGCGCCGGCAACACCCCACCAGCGCCTG
TCAGCGGACGCCCGCACGCCTGATGCGGTCCGCCACCATCTCCAGGAAATCTATACCGCTCTCGATCCGGTCACGTTGTTGCGCGACATCCGCGACGTGC
AGGAGCGCCTCGCGGCGCTCGCGGATATCCAACCATCCGCCCATCCTGCTGCGGCATCACAATCGATTGATCGCTTCCTGGCAAGCCTGCGAACGGCCTG
GAAGGACGGCGCCACGCGCCCGACGGATCGGCCAATCGTGAAGGCTAAAAGGGGCCGGCGTCGTCCCGATCCGCTTATCCGGGCAACGTCAGATTTGAGA
AAATGGTTTGAAGCCGAGCCTTGGCGGACCGGCAGCGAACTGCTCTCGCGCCTGCAGGTGGAATATCCTGGAGACTATCCGAACAAGCTTCTTCGAACCC
TTCAACGTCGGTTGAAATCCTGGCGCAGCGAGCAAGCGAATGCGCTGCTGTTTGCTTCAGAAAAAATGCCGCCAGGGCATGAGGTCACAACACCCCAATG
ACGTGCGAGGTGCCAGCGGAGGAGGCCGGGCGCTCCGAAACCCCGGCCATCTCCGCACCCGGCCTCCTCCTCAACTCAGGCCAGGAGCAAAATAAATGAG
GCAACTGATCGCGCCCGGGAGCATCGATATGTGAGGCAATACG
AAGCATGGCAACGCGGAAGGAACTGACGGCGGCGGCAGGCGTGCGCTATCGGCGGTCGGATCGCGCGAAGAAGGCGCGGATATTGGACGAGTTCGTCGAC
ATCACCGGATTCCATCGGAAGCATGCGATGCGTCTACTTCGAAACCAGGAAGGCGTACATCCGGGCCGACGGGCGCGACGTCGGATATATAATGAAGCAG
AACACACCGCACTCGTGCTGCTTTGGGAGGCGTCAGACCGCATCTGCGGGAAGCGACTGAAAGCATTAATGCCCGCGCTGATTGAGGCGATGGAACGGTA
CGGGCACCTCGACCTTGCCCCTGAGATTCGCACCAAACTTTTGGCGATGAGCGCTGCGACGATCGACCGCGCCTTGGTGCGGGTTCGAGAAAAATTGGGT
CGCAAGCGCCGGCGGCACGCGGGGCATTCCCTGCGTCGCAGTATTCCAATACGGACTTCGGCAGATTGGAATGATCCGGCGCCGGGATTCGTCGAGGCCG
ACCTTGTAGCGCATAGCGGTCCATCTGCGCGCGGCAGCTTCATCCAGACCCTCGTGCTCACCGACATTGCTACCGGCTGGACAGAGTGCGCACCTCTGAT
CGTGCGCGAACAGACGCTGGTGAGCACGGTGCTGACGGAATTGCGCAAGCAATTGCCTTTTGCGCTGCTCGGCTTCGACACGGACAATGACACCGTGTTC
ATGAATGAGACGTTGAAGGCCTACTGCGAGGCGGCCAACATTGTCTTCACGCGTTGCCGTCCCTACCGGAAGAATGACCAGGCGTTCGTCGAGCAAAAGA
ACGGCGCCGTCGTGCGCAGGATGGTCGGCTATCGTAGGTTCGAAGGCCTGGAGGCGGCCAAGCTACTGGCGGAACTCTATCGGTCAGCGCGGCTGTTCGT
AAACTTCTTCCAACCTTCGTTCAAACTGTTAGCCAAGCAGCGCGACGGTGCTCGTGTACGTAAGACATACAGCGCGCCGGCAACACCCCACCAGCGCCTG
TCAGCGGACGCCCGCACGCCTGATGCGGTCCGCCACCATCTCCAGGAAATCTATACCGCTCTCGATCCGGTCACGTTGTTGCGCGACATCCGCGACGTGC
AGGAGCGCCTCGCGGCGCTCGCGGATATCCAACCATCCGCCCATCCTGCTGCGGCATCACAATCGATTGATCGCTTCCTGGCAAGCCTGCGAACGGCCTG
GAAGGACGGCGCCACGCGCCCGACGGATCGGCCAATCGTGAAGGCTAAAAGGGGCCGGCGTCGTCCCGATCCGCTTATCCGGGCAACGTCAGATTTGAGA
AAATGGTTTGAAGCCGAGCCTTGGCGGACCGGCAGCGAACTGCTCTCGCGCCTGCAGGTGGAATATCCTGGAGACTATCCGAACAAGCTTCTTCGAACCC
TTCAACGTCGGTTGAAATCCTGGCGCAGCGAGCAAGCGAATGCGCTGCTGTTTGCTTCAGAAAAAATGCCGCCAGGGCATGAGGTCACAACACCCCAATG
ACGTGCGAGGTGCCAGCGGAGGAGGCCGGGCGCTCCGAAACCCCGGCCATCTCCGCACCCGGCCTCCTCCTCAACTCAGGCCAGGAGCAAAATAAATGAG
GCAACTGATCGCGCCCGGGAGCATCGATATGTGAGGCAATACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1512 bp | 503 aa | 90 | 1601 | + | No |
Chemistry : Unknow
ORF sequence :
MGWLSMATRKELTAAAGVRYRRSDRAKKARILDEFVDITGFHRKHAMRLLRNQEGVHPGRRARRRIYNEAEHTALVLLWEASDRICGKRLKALMPALIEA
MERYGHLDLAPEIRTKLLAMSAATIDRALVRVREKLGRKRRRHAGHSLRRSIPIRTSADWNDPAPGFVEADLVAHSGPSARGSFIQTLVLTDIATGWTEC
APLIVREQTLVSTVLTELRKQLPFALLGFDTDNDTVFMNETLKAYCEAANIVFTRCRPYRKNDQAFVEQKNGAVVRRMVGYRRFEGLEAAKLLAELYRSA
RLFVNFFQPSFKLLAKQRDGARVRKTYSAPATPHQRLSADARTPDAVRHHLQEIYTALDPVTLLRDIRDVQERLAALADIQPSAHPAAASQSIDRFLASL
RTAWKDGATRPTDRPIVKAKRGRRRPDPLIRATSDLRKWFEAEPWRTGSELLSRLQVEYPGDYPNKLLRTLQRRLKSWRSEQANALLFASEKMPPGHEVT
TPQ
MERYGHLDLAPEIRTKLLAMSAATIDRALVRVREKLGRKRRRHAGHSLRRSIPIRTSADWNDPAPGFVEADLVAHSGPSARGSFIQTLVLTDIATGWTEC
APLIVREQTLVSTVLTELRKQLPFALLGFDTDNDTVFMNETLKAYCEAANIVFTRCRPYRKNDQAFVEQKNGAVVRRMVGYRRFEGLEAAKLLAELYRSA
RLFVNFFQPSFKLLAKQRDGARVRKTYSAPATPHQRLSADARTPDAVRHHLQEIYTALDPVTLLRDIRDVQERLAALADIQPSAHPAAASQSIDRFLASL
RTAWKDGATRPTDRPIVKAKRGRRRPDPLIRATSDLRKWFEAEPWRTGSELLSRLQVEYPGDYPNKLLRTLQRRLKSWRSEQANALLFASEKMPPGHEVT
TPQ
Blast result :
Comments
ISBj12 is 59% aa similar to ISKol11.
References
1] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 189-197.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.