ISBj9
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| BA000040 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 1454 bp
Ends
IR Length : 16/18
IRL : CTCTACTTTGGCAGATTTTGCGATTGAGCGGCGGGACCGGATTCACAAAT
IRR : CACTACTTTGGCAGATCTATTCACGCCGTTGCGCTTCGTTGATCTGTCTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACTCTAGAAA | TTAG | TGCGAAACAT | 4 |
| AGTCCACGCC | CTAG | TCCGATGCAG | 4 |
DNA sequence
CTCTACTTTGGCAGATTTTGCGATTGAGCGGCGGGACCGGATTCACAAATCAGTTTTTCAATGATTCATAGGTGGTCGGCTTTTGGAGGGCCGACCATGG
TGGGCACGACGTCGGATTGGGAAGATGAGCTTGGACGCTGGCTGAAGCCATTCCTGGATTGTTTAGGTCACAAGGCGCGGCGGCGAATGTGCCCGCTCTA
TGTTTCGGGGCTGATTGGACCGGGCGATCGTAAAAGCGTCCAGCCGATGGCATCGCGACTGGCGCCGGGCGACTATGATCAGTTGCACCATTTCATCGCT
GACGGCGTCTGGGACGCGGCGCCGTTGGAATCAGAACTGCTCATTCACGCCGACCGGCTCGTCGGTGGCAAGGATGCGGTGTTGGTCATCGACGACACCG
CGATGCCGAAGAAGGGCAATCGCTCGGTTGGTGTCGCGCCGCAATATGCATCTACCCTTGGCAAGACGGCCAATTGCCAAACGTTGGTGTCGCTGACGCT
TGCGCGGGGTGAAGTGCCGGTGATGGTGGCATTGCGTCTCTTCGTTCCCGAGAGTTGGACGAGCGATCCGGCGCGTTTGAAGCGTGCCGGTGTTCCAGTT
GAGCAGCGCGTAGCGCGAACCAAGCCAGAGATCGCGCTGGCCGAGATTGATCGCGTGATGGCAGCCGGTGTTCGCTTCGGCTGTGTACTGGCAGATGCCG
GATACGGTCTCAGCGCGCCGTTCCGTCAGGGTCTCACGGCCCGCGGGCTGGTTTGGGCAGTCGGTATCCTGGGGCGTCAGAAAGTATATCCGGCGGGGGT
GAAGCTGATCTTTCCAATAGCTGGTCGGGGGCGCCCCCGTCAGCGGCACATTCCGGATCTGTTGTCGATGCCGTCGGAAGACATGCTTGCTGACGCCAAG
TGGAAAAATGTGAGTTGGCGGCTGGGGACCAAAGGCAGACTGCAAGCACGCTTTGCCGCCGTTCGCGTGCGGATCGCCGACGGGCCTCCACAACGGATCA
AGGATAAGGGTCAACAGCATCTTCCCGGCGAAGAGGCGTGGCTGATCGGCGAACACCGCAGTTCGGGGGAGAAGAAGTATTATCTGGCAAATCTGCCAGC
CGAGATGGACCTCCGACAGTTGGCTGCAACCGTCAAGGCACGATGGATCTGCGAGCAAGCGCATCAGCAACTAAAAGAGGAGCTCGGTCTTGATCACTTC
GAGGGGCGGTCCTGGCACGGGCTTCACCGTCACGCCCTCATGACGATGATTGCTTACGCCTTCTTGCAACACCGCCGCATCGCCAAAGCGGGACGGAAAA
AAAAGAATCAACGGGCCGCCACCTCAGCCAAGCCTGCCGGCCGTGCGCAACGCCATCGTCGATCTCATTCTTCGGCTACCTCGTCAGCGGTGTCCGCACT
GCAGAAGACAGATCAACGAAGCGCAACGGCGTGAATAGATCTGCCAAAGTAGTG
TGGGCACGACGTCGGATTGGGAAGATGAGCTTGGACGCTGGCTGAAGCCATTCCTGGATTGTTTAGGTCACAAGGCGCGGCGGCGAATGTGCCCGCTCTA
TGTTTCGGGGCTGATTGGACCGGGCGATCGTAAAAGCGTCCAGCCGATGGCATCGCGACTGGCGCCGGGCGACTATGATCAGTTGCACCATTTCATCGCT
GACGGCGTCTGGGACGCGGCGCCGTTGGAATCAGAACTGCTCATTCACGCCGACCGGCTCGTCGGTGGCAAGGATGCGGTGTTGGTCATCGACGACACCG
CGATGCCGAAGAAGGGCAATCGCTCGGTTGGTGTCGCGCCGCAATATGCATCTACCCTTGGCAAGACGGCCAATTGCCAAACGTTGGTGTCGCTGACGCT
TGCGCGGGGTGAAGTGCCGGTGATGGTGGCATTGCGTCTCTTCGTTCCCGAGAGTTGGACGAGCGATCCGGCGCGTTTGAAGCGTGCCGGTGTTCCAGTT
GAGCAGCGCGTAGCGCGAACCAAGCCAGAGATCGCGCTGGCCGAGATTGATCGCGTGATGGCAGCCGGTGTTCGCTTCGGCTGTGTACTGGCAGATGCCG
GATACGGTCTCAGCGCGCCGTTCCGTCAGGGTCTCACGGCCCGCGGGCTGGTTTGGGCAGTCGGTATCCTGGGGCGTCAGAAAGTATATCCGGCGGGGGT
GAAGCTGATCTTTCCAATAGCTGGTCGGGGGCGCCCCCGTCAGCGGCACATTCCGGATCTGTTGTCGATGCCGTCGGAAGACATGCTTGCTGACGCCAAG
TGGAAAAATGTGAGTTGGCGGCTGGGGACCAAAGGCAGACTGCAAGCACGCTTTGCCGCCGTTCGCGTGCGGATCGCCGACGGGCCTCCACAACGGATCA
AGGATAAGGGTCAACAGCATCTTCCCGGCGAAGAGGCGTGGCTGATCGGCGAACACCGCAGTTCGGGGGAGAAGAAGTATTATCTGGCAAATCTGCCAGC
CGAGATGGACCTCCGACAGTTGGCTGCAACCGTCAAGGCACGATGGATCTGCGAGCAAGCGCATCAGCAACTAAAAGAGGAGCTCGGTCTTGATCACTTC
GAGGGGCGGTCCTGGCACGGGCTTCACCGTCACGCCCTCATGACGATGATTGCTTACGCCTTCTTGCAACACCGCCGCATCGCCAAAGCGGGACGGAAAA
AAAAGAATCAACGGGCCGCCACCTCAGCCAAGCCTGCCGGCCGTGCGCAACGCCATCGTCGATCTCATTCTTCGGCTACCTCGTCAGCGGTGTCCGCACT
GCAGAAGACAGATCAACGAAGCGCAACGGCGTGAATAGATCTGCCAAAGTAGTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1374 bp | 457 aa | 61 | 1434 | + | No |
Chemistry : DDE
ORF sequence :
MIHRWSAFGGPTMVGTTSDWEDELGRWLKPFLDCLGHKARRRMCPLYVSGLIGPGDRKSVQPMASRLAPGDYDQLHHFIADGVWDAAPLESELLIHADRL
VGGKDAVLVIDDTAMPKKGNRSVGVAPQYASTLGKTANCQTLVSLTLARGEVPVMVALRLFVPESWTSDPARLKRAGVPVEQRVARTKPEIALAEIDRVM
AAGVRFGCVLADAGYGLSAPFRQGLTARGLVWAVGILGRQKVYPAGVKLIFPIAGRGRPRQRHIPDLLSMPSEDMLADAKWKNVSWRLGTKGRLQARFAA
VRVRIADGPPQRIKDKGQQHLPGEEAWLIGEHRSSGEKKYYLANLPAEMDLRQLAATVKARWICEQAHQQLKEELGLDHFEGRSWHGLHRHALMTMIAYA
FLQHRRIAKAGRKKKNQRAATSAKPAGRAQRHRRSHSSATSSAVSALQKTDQRSATA
VGGKDAVLVIDDTAMPKKGNRSVGVAPQYASTLGKTANCQTLVSLTLARGEVPVMVALRLFVPESWTSDPARLKRAGVPVEQRVARTKPEIALAEIDRVM
AAGVRFGCVLADAGYGLSAPFRQGLTARGLVWAVGILGRQKVYPAGVKLIFPIAGRGRPRQRHIPDLLSMPSEDMLADAKWKNVSWRLGTKGRLQARFAA
VRVRIADGPPQRIKDKGQQHLPGEEAWLIGEHRSSGEKKYYLANLPAEMDLRQLAATVKARWICEQAHQQLKEELGLDHFEGRSWHGLHRHALMTMIAYA
FLQHRRIAKAGRKKKNQRAATSAKPAGRAQRHRRSHSSATSSAVSALQKTDQRSATA
Blast result :
Comments
ISBj9 is 93% aa similar to ISNha1.
References
1] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 189-197.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.