ISBj7
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| BA000040 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 824 bp
Ends
IR Length : 14/16
IRL : GGCACCGTCAAGTTAACGAATAGGGGTGGCCGATGGGGTAGACGACCGGC
IRR : GGCATCGTCAACTTAATCGACCGCCGAGCCGAAGGAGGCGATTCTCAGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GAGGTCAGAG | GTGCCAGGAC | 0 | |
| TCCATTGAAC | CCCTGATGAG | 0 | |
| ACTCCCAACC | GTTCCGGGAT | 0 |
DNA sequence
GGCACCGTCAAGTTAACGAATAGGGGTGGCCGATGGGGTAGACGACCGGCATGCCGACCGCCCGGGCCCCTCTTTATCGCCGCCATCGCTTCCCACCGGA
AGTGATCAGCTATGCCGTTTGGTTGTATTTCCGGTTTCCCTTAAGCTTGCGCATGGTCGAGGAAATGCTGGCGGCGCGTGGCATTGGCGTGACCTATGAA
ACCGTGCGCCAGTGGGGACGGAAATTCGGCAAGCCGTTCTCCGATCGGATCCGCCAGCGCACTCCCCCTCGCGGTGACAAATGGCATCTGGACGAAGTCG
TTATCTCGATCGCGGGCGAACAACATTGGCTCTGGCGCGCTGTCGACCAGAGTGGCTTCGTTCCTGACGTCTTGATCCAGCGCCGAAGAAACTCGCGCGT
TGCGCAGCGGCTCATGAAGAAGCTCTTGAAATCCGCCGGCACGCCGCCGCGCGTTATGATCACGGATAAGCTGCGTTCGTACGGCGCTGCGAGGGCGAAG
ATGGGCTTACACGTCGAACATCGCCAGCACAAAGCTCTCAACAATCGGGCCGAGAATTCTCATCAGCCGACGCGGCGACGCGAGCGGATCATGACGCGCT
TCAAATCGTCCCGTCAGGCTCAACGGTTTCTGTCCGTTCACGATCAGGTCGCGAACCTTTTCCACATCCCCTATCCCGGAGCCGCCACCGCCGACTTCCG
TCGTGCTTCGCGCGAGCGAGCCTTTGCGACTTGGCGCGAGATCTCCATGACAAGCGCTATCGCCGACTCTCGACCTCTGAGAATCGCCTCCTTCGGCTCG
GCGGTCGATTAAGTTGACGATGCC
AGTGATCAGCTATGCCGTTTGGTTGTATTTCCGGTTTCCCTTAAGCTTGCGCATGGTCGAGGAAATGCTGGCGGCGCGTGGCATTGGCGTGACCTATGAA
ACCGTGCGCCAGTGGGGACGGAAATTCGGCAAGCCGTTCTCCGATCGGATCCGCCAGCGCACTCCCCCTCGCGGTGACAAATGGCATCTGGACGAAGTCG
TTATCTCGATCGCGGGCGAACAACATTGGCTCTGGCGCGCTGTCGACCAGAGTGGCTTCGTTCCTGACGTCTTGATCCAGCGCCGAAGAAACTCGCGCGT
TGCGCAGCGGCTCATGAAGAAGCTCTTGAAATCCGCCGGCACGCCGCCGCGCGTTATGATCACGGATAAGCTGCGTTCGTACGGCGCTGCGAGGGCGAAG
ATGGGCTTACACGTCGAACATCGCCAGCACAAAGCTCTCAACAATCGGGCCGAGAATTCTCATCAGCCGACGCGGCGACGCGAGCGGATCATGACGCGCT
TCAAATCGTCCCGTCAGGCTCAACGGTTTCTGTCCGTTCACGATCAGGTCGCGAACCTTTTCCACATCCCCTATCCCGGAGCCGCCACCGCCGACTTCCG
TCGTGCTTCGCGCGAGCGAGCCTTTGCGACTTGGCGCGAGATCTCCATGACAAGCGCTATCGCCGACTCTCGACCTCTGAGAATCGCCTCCTTCGGCTCG
GCGGTCGATTAAGTTGACGATGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 762 bp | 253 aa | 51 | 812 | + | No |
Chemistry : DDE
ORF sequence :
MPTARAPLYRRHRFPPEVISYAVWLYFRFPLSLRMVEEMLAARGIGVTYETVRQWGRKFGKPFSDRIRQRTPPRGDKWHLDEVVISIAGEQHWLWRAVDQ
SGFVPDVLIQRRRNSRVAQRLMKKLLKSAGTPPRVMITDKLRSYGAARAKMGLHVEHRQHKALNNRAENSHQPTRRRERIMTRFKSSRQAQRFLSVHDQV
ANLFHIPYPGAATADFRRASRERAFATWREISMTSAIADSRPLRIASFGSAVD
SGFVPDVLIQRRRNSRVAQRLMKKLLKSAGTPPRVMITDKLRSYGAARAKMGLHVEHRQHKALNNRAENSHQPTRRRERIMTRFKSSRQAQRFLSVHDQV
ANLFHIPYPGAATADFRRASRERAFATWREISMTSAIADSRPLRIASFGSAVD
Blast result :
Comments
ISBj6 is 75% aa similar to ISRsp9.
References
1] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 189-197.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.
2] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256.