ISFK1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP012206 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 6 Bradyrhizobium japonicum NK5 |
DNA section
IS Length : 2592 bp
Ends
IR Length : 38/48
IRL : TGCGCGTTTCGCGGGATCGTGAGCGCGGATTTCAGGGGATCGTGAGCAGA
IRR : TGCGGATTTCACGGATCGTGAGCATCGATTTCGCGCGATCGTGAGCACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGATGTGCT | GCTGGACG | CGAAGATCGC | 8 |
DNA sequence
TGCGCGTTTCGCGGGATCGTGAGCGCGGATTTCAGGGGATCGTGAGCAGAGATTTCAGACGATCGTGAGCAACGATTTCGCGGGATCGTGAGCAAGGCTT
TCGGAGCCTTGCAGCGCTTCGGCCGACAACTCAACCGGCTTAGGGATGACCTCGTGGTTAACGAGGAAGCCCAATGCCTACCCAGAGATTGTCGATGCGC
CGGATCAAGGAAGTCCTTCGGTTAGAACATTTTCAAGGCCTGCCAGAGCGGGCCATCGCGCGGAGCGTGGGCGTCAGCAACGGCGTTGTGCACAGCTACC
TGAGCCGCGCCCGCTCTGCTGGGTTGAGCTGGCCGCTTCCGGAGGGAATGACCGATGAAGACCTGGAGCTTTTGCTTTTCCCAGCCCCACGACCAGCGTC
TCAGAGCCCGCAGCGGCCGGTGCCCGACTGGAGCTACATCGATAAGGAGCTCCGCCGGCGCAACGTAACCCGTCGCCTGCTCTGGGAGGAGTATCGCGCC
GTTAATCCCGACGGTTTCGGGTACACGTGGTTCTGCACTACCTACGAGGCCTGGAAGGGGCGGGTCCGACCTTCGATGCGGCAGATTCATCTGGGCGGCG
AGAAGGTGTTCGTGGATTTCGCCGGCGACACCATCGACATCGTCGATCCCCTGACCGGGGAAGTGCAGCCGATGAAGCTGTTCGTCGCGGCGATGGGCGC
TTCGAACTACACCTACGCCGAGGCCTGCCCCAGCGAGAGCTTGGCCGACTGGATCCGGGCCCACGTCAACTTGTTCACGTTTTTGAGCGGTGCGCCGACG
TTCGTGGTCTGCGACAACCTCAAAGCCGCCGTCAGCAACCCCGACCGCTACGATCCCGGCCTCAATCGCACTTATGCCGAGATGGCGAGCCATTACGGCA
CGGCCATTCTCGCCGCACGGCCGCGGCGCCCAAAAGACAAGGCGAAGGTCGAGGTCGCGGTGCAAATCGCCCAGCGCTGGATTCTGGCCCGGCTGCGCAA
TCAGCGCTTCTTTTCCCGGGCCGAGCTCAACGCCGCCATCAAGACACTCGTCGACGAACTCAATGCTCGTCAAATGCGTGGCTTCGGCTCAAGCCGCGCC
GAACTGTTTGCCGAACTCGACAAACCCAAGCTAACCCCGCTGCCAGATCAGCCTTATGCCTTCGCACGCTGGAAGCGCTGCCGCCTCGCTCCCGATTATC
ATGTCGAGGTCGACGGCCATTGGTACTCCGCGCCGTATCGTCTGATTGGCGAGCTGGTCGATGCCCGTATCGACGATCGGACGGTCGAGATCTTCCACAA
GGGCCAGCGGATCGCCAGCCATGCCCGCGCGCCCAACCGACGCGGACACACCACCATCGCCGACCACATGCCCAGCGCCCATCGCCGCTACGGCGAATGG
ACCCCCGCCGCGGTGATCGCCGCCGGCGAGCGGATCGGTCCTTCGACAGCAGCGTTTTTCCAGGCCGTGATCGACGCCCGGCCCCATCCAGAACAAGGCT
TTCGAACCTGCCTTGGCATTCTGGCGCTCGTCAAAAGCTACGGCGCCGAACGCCTCGACGCAGCCTGCCGGAGGGGCATCCTCATCAAGGCGCGCTCCGT
CGCCTCGATTAGATCGATCCTCCAGAACGGCCTCGATCGCACGTTCTTCGACGAATCTTTCGAGCACCAGCCCCTGCGCCACGGCAACATCCGCGGACGC
GACTACTTCCACTGAAGCAAGGAGAGACCCGGCATGCTTAACCACCCAACCCACGAACGGCTGATCGAGCTTGGCCTGACCGGAATGGCCAAGGCCTTCG
AGGAGCAGCGCCGATCGCCCGATCTCGAAGCCCTGCCGTTCGAAGATCGCATCGGCCTGTTGGTCGACCGCGAAGCCGCCGAACGCGACACCAGGCGGCT
CACCACGCGCCTCAAGATCGCCGCACTGCGCCAGACTGCTTGCGTCGAGGACGTCGATCTGCGCACCCCGCGGGGCATCGACCGCGCCGTTTTCGCCAAA
CTCGTCGAAGGTCGCTGGATCGATCGCCACGAGAATTTGCTCGTCACCGGGGCAACCGGCCTGGGCAAAAGTTGGTTAGCCTGCGCGCTCGGCCACAAGG
CCTGCCGCGACAACCGATCAGTCCTCTATCATCGCGTTCCAAGGCTGTTCGAGGCGCTCGCGCTCGCGCGCGGAGACGGACGTTACGCCCGGCTCCTCAA
AAGCCTCGGCCGCGCTCAGCTTCTGATTTTGGATGATTGGGGACTATCGGTGCTCACCGCCGCGGAACGCCGCGATCTGCTCGAAATCCTCGAGGACCGA
CATGGCCGCGCATCCACCATCGTCACAAGTCAGCTCCCCGTGGACACCTGGCATGGAGCCATTGGGGACCCCACGGTCGCCGACGCCATTCTCGATCGCC
TCGTCCACAACGCCCACCGCCTCCAGCTCACCGGAGAAAGCATGCGAAAACGCAGCGCCAAAACCATCACCCTTGACGGCCAACCAGAACACTGACTCTA
TCTCCCATCGGCCGTAGCGGGCTGCTCACGATCGTCTGAATTCAGTGCTCACGATCGCGCGAAATCGATGCTCACGATCCGTGAAATCCGCA
TCGGAGCCTTGCAGCGCTTCGGCCGACAACTCAACCGGCTTAGGGATGACCTCGTGGTTAACGAGGAAGCCCAATGCCTACCCAGAGATTGTCGATGCGC
CGGATCAAGGAAGTCCTTCGGTTAGAACATTTTCAAGGCCTGCCAGAGCGGGCCATCGCGCGGAGCGTGGGCGTCAGCAACGGCGTTGTGCACAGCTACC
TGAGCCGCGCCCGCTCTGCTGGGTTGAGCTGGCCGCTTCCGGAGGGAATGACCGATGAAGACCTGGAGCTTTTGCTTTTCCCAGCCCCACGACCAGCGTC
TCAGAGCCCGCAGCGGCCGGTGCCCGACTGGAGCTACATCGATAAGGAGCTCCGCCGGCGCAACGTAACCCGTCGCCTGCTCTGGGAGGAGTATCGCGCC
GTTAATCCCGACGGTTTCGGGTACACGTGGTTCTGCACTACCTACGAGGCCTGGAAGGGGCGGGTCCGACCTTCGATGCGGCAGATTCATCTGGGCGGCG
AGAAGGTGTTCGTGGATTTCGCCGGCGACACCATCGACATCGTCGATCCCCTGACCGGGGAAGTGCAGCCGATGAAGCTGTTCGTCGCGGCGATGGGCGC
TTCGAACTACACCTACGCCGAGGCCTGCCCCAGCGAGAGCTTGGCCGACTGGATCCGGGCCCACGTCAACTTGTTCACGTTTTTGAGCGGTGCGCCGACG
TTCGTGGTCTGCGACAACCTCAAAGCCGCCGTCAGCAACCCCGACCGCTACGATCCCGGCCTCAATCGCACTTATGCCGAGATGGCGAGCCATTACGGCA
CGGCCATTCTCGCCGCACGGCCGCGGCGCCCAAAAGACAAGGCGAAGGTCGAGGTCGCGGTGCAAATCGCCCAGCGCTGGATTCTGGCCCGGCTGCGCAA
TCAGCGCTTCTTTTCCCGGGCCGAGCTCAACGCCGCCATCAAGACACTCGTCGACGAACTCAATGCTCGTCAAATGCGTGGCTTCGGCTCAAGCCGCGCC
GAACTGTTTGCCGAACTCGACAAACCCAAGCTAACCCCGCTGCCAGATCAGCCTTATGCCTTCGCACGCTGGAAGCGCTGCCGCCTCGCTCCCGATTATC
ATGTCGAGGTCGACGGCCATTGGTACTCCGCGCCGTATCGTCTGATTGGCGAGCTGGTCGATGCCCGTATCGACGATCGGACGGTCGAGATCTTCCACAA
GGGCCAGCGGATCGCCAGCCATGCCCGCGCGCCCAACCGACGCGGACACACCACCATCGCCGACCACATGCCCAGCGCCCATCGCCGCTACGGCGAATGG
ACCCCCGCCGCGGTGATCGCCGCCGGCGAGCGGATCGGTCCTTCGACAGCAGCGTTTTTCCAGGCCGTGATCGACGCCCGGCCCCATCCAGAACAAGGCT
TTCGAACCTGCCTTGGCATTCTGGCGCTCGTCAAAAGCTACGGCGCCGAACGCCTCGACGCAGCCTGCCGGAGGGGCATCCTCATCAAGGCGCGCTCCGT
CGCCTCGATTAGATCGATCCTCCAGAACGGCCTCGATCGCACGTTCTTCGACGAATCTTTCGAGCACCAGCCCCTGCGCCACGGCAACATCCGCGGACGC
GACTACTTCCACTGAAGCAAGGAGAGACCCGGCATGCTTAACCACCCAACCCACGAACGGCTGATCGAGCTTGGCCTGACCGGAATGGCCAAGGCCTTCG
AGGAGCAGCGCCGATCGCCCGATCTCGAAGCCCTGCCGTTCGAAGATCGCATCGGCCTGTTGGTCGACCGCGAAGCCGCCGAACGCGACACCAGGCGGCT
CACCACGCGCCTCAAGATCGCCGCACTGCGCCAGACTGCTTGCGTCGAGGACGTCGATCTGCGCACCCCGCGGGGCATCGACCGCGCCGTTTTCGCCAAA
CTCGTCGAAGGTCGCTGGATCGATCGCCACGAGAATTTGCTCGTCACCGGGGCAACCGGCCTGGGCAAAAGTTGGTTAGCCTGCGCGCTCGGCCACAAGG
CCTGCCGCGACAACCGATCAGTCCTCTATCATCGCGTTCCAAGGCTGTTCGAGGCGCTCGCGCTCGCGCGCGGAGACGGACGTTACGCCCGGCTCCTCAA
AAGCCTCGGCCGCGCTCAGCTTCTGATTTTGGATGATTGGGGACTATCGGTGCTCACCGCCGCGGAACGCCGCGATCTGCTCGAAATCCTCGAGGACCGA
CATGGCCGCGCATCCACCATCGTCACAAGTCAGCTCCCCGTGGACACCTGGCATGGAGCCATTGGGGACCCCACGGTCGCCGACGCCATTCTCGATCGCC
TCGTCCACAACGCCCACCGCCTCCAGCTCACCGGAGAAAGCATGCGAAAACGCAGCGCCAAAACCATCACCCTTGACGGCCAACCAGAACACTGACTCTA
TCTCCCATCGGCCGTAGCGGGCTGCTCACGATCGTCTGAATTCAGTGCTCACGATCGCGCGAAATCGATGCTCACGATCCGTGAAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1542 bp | 513 aa | 174 | 1715 | + | No |
Chemistry : DDE
ORF sequence :
MPTQRLSMRRIKEVLRLEHFQGLPERAIARSVGVSNGVVHSYLSRARSAGLSWPLPEGMTDEDLELLLFPAPRPASQSPQRPVPDWSYIDKELRRRNVTR
RLLWEEYRAVNPDGFGYTWFCTTYEAWKGRVRPSMRQIHLGGEKVFVDFAGDTIDIVDPLTGEVQPMKLFVAAMGASNYTYAEACPSESLADWIRAHVNL
FTFLSGAPTFVVCDNLKAAVSNPDRYDPGLNRTYAEMASHYGTAILAARPRRPKDKAKVEVAVQIAQRWILARLRNQRFFSRAELNAAIKTLVDELNARQ
MRGFGSSRAELFAELDKPKLTPLPDQPYAFARWKRCRLAPDYHVEVDGHWYSAPYRLIGELVDARIDDRTVEIFHKGQRIASHARAPNRRGHTTIADHMP
SAHRRYGEWTPAAVIAAGERIGPSTAAFFQAVIDARPHPEQGFRTCLGILALVKSYGAERLDAACRRGILIKARSVASIRSILQNGLDRTFFDESFEHQP
LRHGNIRGRDYFH
RLLWEEYRAVNPDGFGYTWFCTTYEAWKGRVRPSMRQIHLGGEKVFVDFAGDTIDIVDPLTGEVQPMKLFVAAMGASNYTYAEACPSESLADWIRAHVNL
FTFLSGAPTFVVCDNLKAAVSNPDRYDPGLNRTYAEMASHYGTAILAARPRRPKDKAKVEVAVQIAQRWILARLRNQRFFSRAELNAAIKTLVDELNARQ
MRGFGSSRAELFAELDKPKLTPLPDQPYAFARWKRCRLAPDYHVEVDGHWYSAPYRLIGELVDARIDDRTVEIFHKGQRIASHARAPNRRGHTTIADHMP
SAHRRYGEWTPAAVIAAGERIGPSTAAFFQAVIDARPHPEQGFRTCLGILALVKSYGAERLDAACRRGILIKARSVASIRSILQNGLDRTFFDESFEHQP
LRHGNIRGRDYFH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
762 bp | 253 aa | 1734 | 2495 | + | No |
AG : IS21 helper
ORF sequence :
MLNHPTHERLIELGLTGMAKAFEEQRRSPDLEALPFEDRIGLLVDREAAERDTRRLTTRLKIAALRQTACVEDVDLRTPRGIDRAVFAKLVEGRWIDRHE
NLLVTGATGLGKSWLACALGHKACRDNRSVLYHRVPRLFEALALARGDGRYARLLKSLGRAQLLILDDWGLSVLTAAERRDLLEILEDRHGRASTIVTSQ
LPVDTWHGAIGDPTVADAILDRLVHNAHRLQLTGESMRKRSAKTITLDGQPEH
NLLVTGATGLGKSWLACALGHKACRDNRSVLYHRVPRLFEALALARGDGRYARLLKSLGRAQLLILDDWGLSVLTAAERRDLLEILEDRHGRASTIVTSQ
LPVDTWHGAIGDPTVADAILDRLVHNAHRLQLTGESMRKRSAKTITLDGQPEH
Blast result :
Comments
ISFK1 is 66% (ORFA : the transposase) aa similar to ISSpu5 and 78% (ORFB : the helper of transposition) to ISIde2.
References
1] Isawa,T., Sameshima,R., Mitsui,H. and Minamisawa,K. (1999) Appl. Environ. Microbiol. 65 (8), 3493-3501
2] Kaneko,T., Maita,H., Hirakawa,H., Uchiike,N., Minamisawa,K., Watanabe,A. and Sato,S. (2011) Genes (Basel) 2 (4), 763-787.
2] Kaneko,T., Maita,H., Hirakawa,H., Uchiike,N., Minamisawa,K., Watanabe,A. and Sato,S. (2011) Genes (Basel) 2 (4), 763-787.