ISMesi2
- Family IS701
- Group ISAba11
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_014212 | ND | Meiothermus silvanus | Meiothermus silvanus DSM 9946
Meiothermus silvanus DSM 9946 plasmid pMESIL01 |
DNA section
IS Length : 1092 bp
Ends
IR Length : 16/17
IRL : TAGGAGTTACGCAGTTGCAGTTGACTGGACATTCTTCTGTGTGCTAGGAG
IRR : TAGGACTTACGCAGTTGGCTGAAGGATGTGGAGGGGATGGGCGAGATAAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGAGTCTCAC | ATGTG | TTTGTCCGGG | 5 |
| ACGTTTTAAA | AACTG | TAAAAGTGTT | 5 |
| CTACGTAGAA | AACTC | CTTGAAGTCA | 5 |
| AGTTTCCTTA | ACAGA | GTTAACAAAA | 5 |
| CCCACCTTAT | AGGTC | TTTTTGCCAA | 5 |
| TAGGGTCAAT | TATAT | GTCGTACGTC | 5 |
| GTAACGTTAT | TTGGG | TTGAACGCGG | 5 |
| GATGTCCAAC | AGCAG | ATAACCGCTC | 5 |
| GATTTTCGAC | ACCTT | ATTGACTCGC | 5 |
| ACGAAATAAA | TCGAG | GTGGAAAGCG | 5 |
| TTGACCGATT | ACAAT | ATTTGACAGA | 5 |
| CTGACTTAAT | ATATT | TCGATTCGCG | 5 |
| ACGTTTTAAT | ATTAT | GTGAAAACCT | 5 |
| CCATCGAGAA | ACTAA | TACCGGGCGG | 5 |
| GGGATTTTGC | AACAT | AAAAACCTGC | 5 |
| TTACCTCCTA | AATGT | ATATACGAAG | 5 |
| GAGACTCTAA | GCTGG | GATAAAAAGA | 5 |
| TCAACCGAAT | CTGGT | ATCAATCCTT | 5 |
| CTGGCTTAAT | CAAAC | ATTTAATAAA | 5 |
| AAAAGCAGAT | ACGAG | AAAATCAAGC | 5 |
| GACTTTTGAC | AGATGT | ATTGGACACT | 6 |
| TTAGAGTCTC | ACATGT | GTTTGTCCGG | 6 |
| GAAACGACAT | AAATGT | GAAATTTTGA | 6 |
| CAAATCTTAC | ACCCGT | ATCTGGGCTT | 6 |
| GGTAGACGCT | AGGGGGATAA | 0 | |
| GACTGGTTGC | TGGAGGA | GAGCGATGAA | 7 |
| TTCGGCCAAC | CTGCT | ATCACGTATT | 5 |
| TATCGGTATA | TTAAT | TTTACCAAAC | 5 |
| GCTGGAAAAA | AGGCT | GTTGCAGGAA | 5 |
| GGAATTCTTC | ATCTG | CTTTCCCCAG | 5 |
| TATGGAAAAT | ACTCA | GTATGATCGA | 5 |
| GACTGGTTGC | TGGAGGA | GAGCGATGAA | 7 |
| TCTTTTTGAA | TCCGGT | ATCAAAGCAA | 6 |
DNA sequence
TAGGAGTTACGCAGTTGCAGTTGACTGGACATTCTTCTGTGTGCTAGGAGGAGAGTGCTTAGCCAAGCTTCTCCAAAGGGGGTGATGCCCATGAACCCAC
CGAAGTGCGATGACCTGGACTACATCCACTTTCTCATCGCCGCTCAGCGGGTCTTCACCTGTACCGAGGCCGCTCGCTGTAGTCCAAAGGAGAAGAGCCC
TCCCGCCCATGATGCCTTTACCCGCCTGCTGCAAAGACAGCCGCCCGACACGGCGGCGCTGTGGCAGGAGGCCAAGGCCTTCGTGAAGCTCAGGGAGGGG
CTGCTGATCCTGGACGACACCACCCTGGATAAGCCCTACGCTCGGGACATGGATCTGGTGAGTTACCACTGGAGCGGCAAACACCAAAGGGTGGTTAGGG
GCATCGCCCTCATGACCCTGCTGTGGACGGAGGGGCAGGCCCTGATCCCCTGCGACTTTCGGGTCTACGACAAGCCCCAGGATGGGAAGAGCAAAAACGA
CCACTTTCAGACCATGCTCCAGAAAGCGAAGGAGCGGGGGTTTCAGCCGGAATATGTCCTGATGGACAGCTGGTATGCCAGCTTGGAGAACCTCAAGGCC
ATAGTCAGCTTTGGCTGGCGGTTTCTGACGCGGCTGAAGGGCAACCGCCTGGTCAACCCGGAGGGGAAGGGAAATGTACCCATCCGTGAGGTGGAAATCC
CTGGGGAGGGGAGGGTGGTTCATCTTCGGGGTTTTGGGTTCGTGAGGGTGTTCCGAACGCTCTCCAAGGACGGGGAGGCGGAGTACTGGGCCACGAACCA
TCTGGGGATGAGCGAAGAGAAGCGGGCGGAGTTAGAGCGGCAAGGATGGGGGATCGAAGTGTACCATCGGGGGCTCAAGCAGTGCTGTGGGGTGGAGCGG
GCCCAGGTGAGGAAGGCGGTCTCCATCCTGCGGCACCTCCTCCTGGCTTTGCGGGCCTTCCTCCGGCTGGAGGTCTACCGGCTGCGCAGGGGGGTGAGCT
GGTACGAGGCCAAGGCGTCCATTGTTCGCGAGGCAATACGAAGTTATCTCGCCCATCCCCTCCACATCCTTCAGCCAACTGCGTAAGTCCTA
CGAAGTGCGATGACCTGGACTACATCCACTTTCTCATCGCCGCTCAGCGGGTCTTCACCTGTACCGAGGCCGCTCGCTGTAGTCCAAAGGAGAAGAGCCC
TCCCGCCCATGATGCCTTTACCCGCCTGCTGCAAAGACAGCCGCCCGACACGGCGGCGCTGTGGCAGGAGGCCAAGGCCTTCGTGAAGCTCAGGGAGGGG
CTGCTGATCCTGGACGACACCACCCTGGATAAGCCCTACGCTCGGGACATGGATCTGGTGAGTTACCACTGGAGCGGCAAACACCAAAGGGTGGTTAGGG
GCATCGCCCTCATGACCCTGCTGTGGACGGAGGGGCAGGCCCTGATCCCCTGCGACTTTCGGGTCTACGACAAGCCCCAGGATGGGAAGAGCAAAAACGA
CCACTTTCAGACCATGCTCCAGAAAGCGAAGGAGCGGGGGTTTCAGCCGGAATATGTCCTGATGGACAGCTGGTATGCCAGCTTGGAGAACCTCAAGGCC
ATAGTCAGCTTTGGCTGGCGGTTTCTGACGCGGCTGAAGGGCAACCGCCTGGTCAACCCGGAGGGGAAGGGAAATGTACCCATCCGTGAGGTGGAAATCC
CTGGGGAGGGGAGGGTGGTTCATCTTCGGGGTTTTGGGTTCGTGAGGGTGTTCCGAACGCTCTCCAAGGACGGGGAGGCGGAGTACTGGGCCACGAACCA
TCTGGGGATGAGCGAAGAGAAGCGGGCGGAGTTAGAGCGGCAAGGATGGGGGATCGAAGTGTACCATCGGGGGCTCAAGCAGTGCTGTGGGGTGGAGCGG
GCCCAGGTGAGGAAGGCGGTCTCCATCCTGCGGCACCTCCTCCTGGCTTTGCGGGCCTTCCTCCGGCTGGAGGTCTACCGGCTGCGCAGGGGGGTGAGCT
GGTACGAGGCCAAGGCGTCCATTGTTCGCGAGGCAATACGAAGTTATCTCGCCCATCCCCTCCACATCCTTCAGCCAACTGCGTAAGTCCTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1032 bp | 343 aa | 55 | 1086 | + | No |
Description :
ORF sequence :
MLSQASPKGVMPMNPPKCDDLDYIHFLIAAQRVFTCTEAARCSPKEKSPPAHDAFTRLLQRQPPDTAALWQEAKAFVKLREGLLILDDTTLDKPYARDMD
LVSYHWSGKHQRVVRGIALMTLLWTEGQALIPCDFRVYDKPQDGKSKNDHFQTMLQKAKERGFQPEYVLMDSWYASLENLKAIVSFGWRFLTRLKGNRLV
NPEGKGNVPIREVEIPGEGRVVHLRGFGFVRVFRTLSKDGEAEYWATNHLGMSEEKRAELERQGWGIEVYHRGLKQCCGVERAQVRKAVSILRHLLLALR
AFLRLEVYRLRRGVSWYEAKASIVREAIRSYLAHPLHILQPTA
LVSYHWSGKHQRVVRGIALMTLLWTEGQALIPCDFRVYDKPQDGKSKNDHFQTMLQKAKERGFQPEYVLMDSWYASLENLKAIVSFGWRFLTRLKGNRLV
NPEGKGNVPIREVEIPGEGRVVHLRGFGFVRVFRTLSKDGEAEYWATNHLGMSEEKRAELERQGWGIEVYHRGLKQCCGVERAQVRKAVSILRHLLLALR
AFLRLEVYRLRRGVSWYEAKASIVREAIRSYLAHPLHILQPTA
Blast result :
Comments
ISMesi2 is 63% aa similar to ISMhu9.
There is 25 copies of ISMesi2 on Meiothermus silvanus DSM 9946 chromosome, and 8 copies on the plasmid.
There is 25 copies of ISMesi2 on Meiothermus silvanus DSM 9946 chromosome, and 8 copies on the plasmid.
References
1] ISfinder annotation (2011).