ISCysp21

  • Family IS701
  • Group ISAba11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011721 ND Cyanothece sp.
Cyanothece sp. PCC 8801 pP880101
DNA section
IS Length : 1139 bp

Ends


IR Length : 19

IRL : TAGGACTTACGCATTGACAGAGTGATAAAATAGTGTATCCCCAAATGAAG
IRR : TAGGACTTACGCATTGACAAAAATAGCCACCTATGAATTTATATAGTACA

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAGATCCCTACTTTTACA0

DNA sequence

TAGGACTTACGCATTGACAGAGTGATAAAATAGTGTATCCCCAAATGAAGAGCGTCTAGAAAGAGGTATTGAACAATTAGAGAAATTACCAAACCATCAA
CAGCACAATGTAATCTAGAACATTAGACTCTATTTTTGCTATCGGAACCCAAGCAGAGCGGATGTTCTAGATTGGCGGAAATCTTGGAAGATGTTTCCCA
TGACAGTATCAATCGCTTTTTATTAAGAGAGAGATATGAACCGAAAGATTTGTTCAAGATGGTAATGAGCATAATTAATCTGGTAGGAGGAATTTTAAGT
GTTGATGATACAGTAATAGAAAAGTTATATAGCAATCCGTTATGCGCGGAATTAATTGGATATTTTTGGTCAGGGAAGTATCATAAAACCATAAAAGGGA
TAAATTTAATAACACTGTATTACAGCGATATTCAGGGAAATTCAGTGCCAATCAACTACAGAATATATGACAAAAAGGAGGGAAAAACCAAGAACGATTA
CTTCCAAGAAATGCTGATAGAAGTAATGAGTTGGGGAGTGAAACCCAGATTAGTAACAGGAGACAGTTGGTACTCATCCGTGGCAAACTTGAAATTTTTA
AGAAACCAGAAATTAGGTTTTCTCTTCGGAATTGAGAAAAATAGAACTGTCTCAAACGAGCCAGGAAAGTATCACCAAGTAAGCAAACTAGACATTCCCG
CTCCAGGATTAATTACTCATTTAAGGGAATTTGGCGTGATCAAACTGTTTAGGAAAGACTTCAAAAAAGAAGACTCTAGACACTACATCTTATACTTTCC
CGATGAAGAGATTCTCCAAAAGATAACAAGAAGTGAGTTTGTCACCATTCATGATACCCACTGGGGAATAGAAAGTTTTCATCGAGCCATCAAACAACTC
TGTGGTCTTGGTAAATTTATGGTTAGAGACAGCCAGGCTATCAAAACACATATTTTTTGTTCACTTCAAGCTTTTGTACGCCTGGAAAAAATGTGCTCGG
AGAAAATCATTGTCAATTGGTATGAACTCCAAAGAAATCTATTCACAAAAGTCATCCGCGAATACATTTGTGACAATCTTCTGACTGTTTGTACTATATA
AATTCATAGGTGGCTATTTTTGTCAATGCGTAAGTCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
98 bp321 aa13639+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

LLSEPKQSGCSRLAEILEDVSHDSINRFLLRERYEPKDLFKMVMSIINLVGGILSVDDTVIEKLYSNPLCAELIGYFWSGKYHKTIKGINLITLYYSDIQ
GNSVPINYRIYDKKEGKTKNDYFQEMLIEVMSWGVKPRLVTGDSWYSSVANLKFLRNQKLGFLFGIEKNRTVSNEPGKYHQVSKLDIPAPGLITHLREFG
VIKLFRKDFKKEDSRHYILYFPDEEILQKITRSEFVTIHDTHWGIESFHRAIKQLCGLGKFMVRDSQAIKTHIFCSLQAFVRLEKMCSEKIIVNWYELQR
NLFTKVIREYICDNLLTVCTI

 

Blast result :
Comments
ISAba11-like insertion sequence present as a single-copy on the plasmid pP880101. This IS element is a member of a small and newly described IS family that has diverged from the IS4 family. See Rieck et al. (manuscript submitted) for further details.
ISCysp21 is 73% aa similar to ISAcma22.
References
1] Kumar Rajakumar (2011) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P.(2008) direct submission to GenBank.