ISCysp21
- Family IS701
- Group ISAba11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011721 | ND | Cyanothece sp. | Cyanothece sp. PCC 8801 pP880101 |
DNA section
IS Length : 1139 bp
Ends
IR Length : 19
IRL : TAGGACTTACGCATTGACAGAGTGATAAAATAGTGTATCCCCAAATGAAG
IRR : TAGGACTTACGCATTGACAAAAATAGCCACCTATGAATTTATATAGTACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAGATCCC | TACTTTTACA | 0 |
DNA sequence
TAGGACTTACGCATTGACAGAGTGATAAAATAGTGTATCCCCAAATGAAGAGCGTCTAGAAAGAGGTATTGAACAATTAGAGAAATTACCAAACCATCAA
CAGCACAATGTAATCTAGAACATTAGACTCTATTTTTGCTATCGGAACCCAAGCAGAGCGGATGTTCTAGATTGGCGGAAATCTTGGAAGATGTTTCCCA
TGACAGTATCAATCGCTTTTTATTAAGAGAGAGATATGAACCGAAAGATTTGTTCAAGATGGTAATGAGCATAATTAATCTGGTAGGAGGAATTTTAAGT
GTTGATGATACAGTAATAGAAAAGTTATATAGCAATCCGTTATGCGCGGAATTAATTGGATATTTTTGGTCAGGGAAGTATCATAAAACCATAAAAGGGA
TAAATTTAATAACACTGTATTACAGCGATATTCAGGGAAATTCAGTGCCAATCAACTACAGAATATATGACAAAAAGGAGGGAAAAACCAAGAACGATTA
CTTCCAAGAAATGCTGATAGAAGTAATGAGTTGGGGAGTGAAACCCAGATTAGTAACAGGAGACAGTTGGTACTCATCCGTGGCAAACTTGAAATTTTTA
AGAAACCAGAAATTAGGTTTTCTCTTCGGAATTGAGAAAAATAGAACTGTCTCAAACGAGCCAGGAAAGTATCACCAAGTAAGCAAACTAGACATTCCCG
CTCCAGGATTAATTACTCATTTAAGGGAATTTGGCGTGATCAAACTGTTTAGGAAAGACTTCAAAAAAGAAGACTCTAGACACTACATCTTATACTTTCC
CGATGAAGAGATTCTCCAAAAGATAACAAGAAGTGAGTTTGTCACCATTCATGATACCCACTGGGGAATAGAAAGTTTTCATCGAGCCATCAAACAACTC
TGTGGTCTTGGTAAATTTATGGTTAGAGACAGCCAGGCTATCAAAACACATATTTTTTGTTCACTTCAAGCTTTTGTACGCCTGGAAAAAATGTGCTCGG
AGAAAATCATTGTCAATTGGTATGAACTCCAAAGAAATCTATTCACAAAAGTCATCCGCGAATACATTTGTGACAATCTTCTGACTGTTTGTACTATATA
AATTCATAGGTGGCTATTTTTGTCAATGCGTAAGTCCTA
CAGCACAATGTAATCTAGAACATTAGACTCTATTTTTGCTATCGGAACCCAAGCAGAGCGGATGTTCTAGATTGGCGGAAATCTTGGAAGATGTTTCCCA
TGACAGTATCAATCGCTTTTTATTAAGAGAGAGATATGAACCGAAAGATTTGTTCAAGATGGTAATGAGCATAATTAATCTGGTAGGAGGAATTTTAAGT
GTTGATGATACAGTAATAGAAAAGTTATATAGCAATCCGTTATGCGCGGAATTAATTGGATATTTTTGGTCAGGGAAGTATCATAAAACCATAAAAGGGA
TAAATTTAATAACACTGTATTACAGCGATATTCAGGGAAATTCAGTGCCAATCAACTACAGAATATATGACAAAAAGGAGGGAAAAACCAAGAACGATTA
CTTCCAAGAAATGCTGATAGAAGTAATGAGTTGGGGAGTGAAACCCAGATTAGTAACAGGAGACAGTTGGTACTCATCCGTGGCAAACTTGAAATTTTTA
AGAAACCAGAAATTAGGTTTTCTCTTCGGAATTGAGAAAAATAGAACTGTCTCAAACGAGCCAGGAAAGTATCACCAAGTAAGCAAACTAGACATTCCCG
CTCCAGGATTAATTACTCATTTAAGGGAATTTGGCGTGATCAAACTGTTTAGGAAAGACTTCAAAAAAGAAGACTCTAGACACTACATCTTATACTTTCC
CGATGAAGAGATTCTCCAAAAGATAACAAGAAGTGAGTTTGTCACCATTCATGATACCCACTGGGGAATAGAAAGTTTTCATCGAGCCATCAAACAACTC
TGTGGTCTTGGTAAATTTATGGTTAGAGACAGCCAGGCTATCAAAACACATATTTTTTGTTCACTTCAAGCTTTTGTACGCCTGGAAAAAATGTGCTCGG
AGAAAATCATTGTCAATTGGTATGAACTCCAAAGAAATCTATTCACAAAAGTCATCCGCGAATACATTTGTGACAATCTTCTGACTGTTTGTACTATATA
AATTCATAGGTGGCTATTTTTGTCAATGCGTAAGTCCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
98 bp | 321 aa | 136 | 39 | + | No |
Chemistry : DDE
ORF sequence :
LLSEPKQSGCSRLAEILEDVSHDSINRFLLRERYEPKDLFKMVMSIINLVGGILSVDDTVIEKLYSNPLCAELIGYFWSGKYHKTIKGINLITLYYSDIQ
GNSVPINYRIYDKKEGKTKNDYFQEMLIEVMSWGVKPRLVTGDSWYSSVANLKFLRNQKLGFLFGIEKNRTVSNEPGKYHQVSKLDIPAPGLITHLREFG
VIKLFRKDFKKEDSRHYILYFPDEEILQKITRSEFVTIHDTHWGIESFHRAIKQLCGLGKFMVRDSQAIKTHIFCSLQAFVRLEKMCSEKIIVNWYELQR
NLFTKVIREYICDNLLTVCTI
GNSVPINYRIYDKKEGKTKNDYFQEMLIEVMSWGVKPRLVTGDSWYSSVANLKFLRNQKLGFLFGIEKNRTVSNEPGKYHQVSKLDIPAPGLITHLREFG
VIKLFRKDFKKEDSRHYILYFPDEEILQKITRSEFVTIHDTHWGIESFHRAIKQLCGLGKFMVRDSQAIKTHIFCSLQAFVRLEKMCSEKIIVNWYELQR
NLFTKVIREYICDNLLTVCTI
Blast result :
Comments
ISAba11-like insertion sequence present as a single-copy on the plasmid pP880101. This IS element is a member of a small and newly described IS family that has diverged from the IS4 family. See Rieck et al. (manuscript submitted) for further details.
ISCysp21 is 73% aa similar to ISAcma22.
ISCysp21 is 73% aa similar to ISAcma22.
References
1] Kumar Rajakumar (2011) Direct submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P.(2008) direct submission to GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Chertkov,O., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Liberton,M., Stoeckel,J., Banerjee,A., Singh,A., Page,L., Sato,H., Zhao,L., Sherman,L., Pakrasi,H. and Richardson,P.(2008) direct submission to GenBank.