ISPna6
- Family IS701
- Group ISAba11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008760 | ND | Polaromonas naphthalenivorans | Polaromonas naphthalenivorans CJ2 pPNAP04 |
DNA section
IS Length : 1124 bp
Ends
IR Length : 17
IRL : TAGGACTTACGCATTGATGCGCACGGCGAATTCTGTTAGCAGGAGGATTG
IRR : TAGGACTTACGCATTGACAGTCGTACGAAATTGTGGGTTCAAGTGTTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTTTAAAAA | AACTT | CTGTTGTCCG | 5 |
DNA sequence
TAGGACTTACGCATTGATGCGCACGGCGAATTCTGTTAGCAGGAGGATTGACTTGTGCTCAAACTCACTGGCTGATGAGAAAACCGACCCGCCCGCCTAC
AGCCCGATGCACCTTGCCGATGTACATGGGATTTTTGATGAGTGAACCCAAGTCAAGCACCTGCACGCGGCTGTCGCAAGTCATGGGCATCTCGCATGAC
AGCGTGAACCGGTTTTTGCTGCGTGAATCGTATGAGCCCAAAGACCTGTTCGATGAGGCGCAAAAGCTGCTCGACATGGTGGGCGGCACGCTCAATGTGG
ATGACACCACGCTGGACAAGCCGTACAGCCAGAAGATGGCGCTGGTGGGGCATTTTTGGTCCGGCAAGCACCGCCGGGCGGTCAAGGGATTGAACTTGGT
GACGCTGTACTACACCGACGTGCAAGGGCGCAGCCTGCCGGTGAACTACCGGGTGTATGACAAAGCCGATGACAAAACCAAGAACGATTACTTCCAGGAC
ATGCTGGCCGAAGTATTGGCGTGGGGACTGCGGCCGGCTTTTGCCACCGGTGACTCCTGGTATTCGTGCGAGAAAAACCTCAAGACGGTAAAAAACCACC
AGATGGGGTTAATGTTCGCCGTCGAAGCCAACCGCACCGTGTCAGTGGAAAAAGGCACATGGGTGCAGGTGCAAAGGCTCGATGTTCCTGAGGAAGGCCT
GATGGTGTGGTTGCGCAATTTCGGGCCGGTCAAGCTGTTTCGCACGCGACTGAAAGACCAGTTGCGCCATTACTTGGCTTGCCTGCCCGATGCCCAGGGC
TACAGCACCTTCGGGCGCCTGAACTTTCAAAAGCTGCATGACCAGCATTGGGGAATTGAACAATATCACCGCCTGCTCAAGCAGGTCTGCAACGTCGAGC
GTTTCCAGGTGCGCGGCAAAGTGCCCATACTGAACCATATCTTTGCCGCGCTGTGCAGCTTTGTGCAGTTGCAGGAAATGCGGTTCACCCACGCCATTGT
CAACGCCTACCAATGGAAGACAGAATTGTTTACCCAGGTAGTCGCCACTTTTGTCACGGGGTTCATTCCTGGCAAAAAACACTTGAACCCACAATTTCGT
ACGACTGTCAATGCGTAAGTCCTA
AGCCCGATGCACCTTGCCGATGTACATGGGATTTTTGATGAGTGAACCCAAGTCAAGCACCTGCACGCGGCTGTCGCAAGTCATGGGCATCTCGCATGAC
AGCGTGAACCGGTTTTTGCTGCGTGAATCGTATGAGCCCAAAGACCTGTTCGATGAGGCGCAAAAGCTGCTCGACATGGTGGGCGGCACGCTCAATGTGG
ATGACACCACGCTGGACAAGCCGTACAGCCAGAAGATGGCGCTGGTGGGGCATTTTTGGTCCGGCAAGCACCGCCGGGCGGTCAAGGGATTGAACTTGGT
GACGCTGTACTACACCGACGTGCAAGGGCGCAGCCTGCCGGTGAACTACCGGGTGTATGACAAAGCCGATGACAAAACCAAGAACGATTACTTCCAGGAC
ATGCTGGCCGAAGTATTGGCGTGGGGACTGCGGCCGGCTTTTGCCACCGGTGACTCCTGGTATTCGTGCGAGAAAAACCTCAAGACGGTAAAAAACCACC
AGATGGGGTTAATGTTCGCCGTCGAAGCCAACCGCACCGTGTCAGTGGAAAAAGGCACATGGGTGCAGGTGCAAAGGCTCGATGTTCCTGAGGAAGGCCT
GATGGTGTGGTTGCGCAATTTCGGGCCGGTCAAGCTGTTTCGCACGCGACTGAAAGACCAGTTGCGCCATTACTTGGCTTGCCTGCCCGATGCCCAGGGC
TACAGCACCTTCGGGCGCCTGAACTTTCAAAAGCTGCATGACCAGCATTGGGGAATTGAACAATATCACCGCCTGCTCAAGCAGGTCTGCAACGTCGAGC
GTTTCCAGGTGCGCGGCAAAGTGCCCATACTGAACCATATCTTTGCCGCGCTGTGCAGCTTTGTGCAGTTGCAGGAAATGCGGTTCACCCACGCCATTGT
CAACGCCTACCAATGGAAGACAGAATTGTTTACCCAGGTAGTCGCCACTTTTGTCACGGGGTTCATTCCTGGCAAAAAACACTTGAACCCACAATTTCGT
ACGACTGTCAATGCGTAAGTCCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 75 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MRKPTRPPTARCTLPMYMGFLMSEPKSSTCTRLSQVMGISHDSVNRFLLRESYEPKDLFDEAQKLLDMVGGTLNVDDTTLDKPYSQKMALVGHFWSGKHR
RAVKGLNLVTLYYTDVQGRSLPVNYRVYDKADDKTKNDYFQDMLAEVLAWGLRPAFATGDSWYSCEKNLKTVKNHQMGLMFAVEANRTVSVEKGTWVQVQ
RLDVPEEGLMVWLRNFGPVKLFRTRLKDQLRHYLACLPDAQGYSTFGRLNFQKLHDQHWGIEQYHRLLKQVCNVERFQVRGKVPILNHIFAALCSFVQLQ
EMRFTHAIVNAYQWKTELFTQVVATFVTGFIPGKKHLNPQFRTTVNA
RAVKGLNLVTLYYTDVQGRSLPVNYRVYDKADDKTKNDYFQDMLAEVLAWGLRPAFATGDSWYSCEKNLKTVKNHQMGLMFAVEANRTVSVEKGTWVQVQ
RLDVPEEGLMVWLRNFGPVKLFRTRLKDQLRHYLACLPDAQGYSTFGRLNFQKLHDQHWGIEQYHRLLKQVCNVERFQVRGKVPILNHIFAALCSFVQLQ
EMRFTHAIVNAYQWKTELFTQVVATFVTGFIPGKKHLNPQFRTTVNA
Blast result :
Comments
ISPna6 is 70% aa similar to ISAba11.
References
1] Kumar Rajakumar (2011) Direct submission.
2] Yagi,J.M., Sims,D., Brettin,T., Bruce,D. and Madsen,E.L. (2009) Environ. Microbiol. 11 (9), 2253-2270.
2] Yagi,J.M., Sims,D., Brettin,T., Bruce,D. and Madsen,E.L. (2009) Environ. Microbiol. 11 (9), 2253-2270.