ISPna6

  • Family IS701
  • Group ISAba11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008760 ND Polaromonas naphthalenivorans
Polaromonas naphthalenivorans CJ2 pPNAP04
DNA section
IS Length : 1124 bp

Ends


IR Length : 17

IRL : TAGGACTTACGCATTGATGCGCACGGCGAATTCTGTTAGCAGGAGGATTG
IRR : TAGGACTTACGCATTGACAGTCGTACGAAATTGTGGGTTCAAGTGTTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTTAAAAAAACTTCTGTTGTCCG5

DNA sequence

TAGGACTTACGCATTGATGCGCACGGCGAATTCTGTTAGCAGGAGGATTGACTTGTGCTCAAACTCACTGGCTGATGAGAAAACCGACCCGCCCGCCTAC
AGCCCGATGCACCTTGCCGATGTACATGGGATTTTTGATGAGTGAACCCAAGTCAAGCACCTGCACGCGGCTGTCGCAAGTCATGGGCATCTCGCATGAC
AGCGTGAACCGGTTTTTGCTGCGTGAATCGTATGAGCCCAAAGACCTGTTCGATGAGGCGCAAAAGCTGCTCGACATGGTGGGCGGCACGCTCAATGTGG
ATGACACCACGCTGGACAAGCCGTACAGCCAGAAGATGGCGCTGGTGGGGCATTTTTGGTCCGGCAAGCACCGCCGGGCGGTCAAGGGATTGAACTTGGT
GACGCTGTACTACACCGACGTGCAAGGGCGCAGCCTGCCGGTGAACTACCGGGTGTATGACAAAGCCGATGACAAAACCAAGAACGATTACTTCCAGGAC
ATGCTGGCCGAAGTATTGGCGTGGGGACTGCGGCCGGCTTTTGCCACCGGTGACTCCTGGTATTCGTGCGAGAAAAACCTCAAGACGGTAAAAAACCACC
AGATGGGGTTAATGTTCGCCGTCGAAGCCAACCGCACCGTGTCAGTGGAAAAAGGCACATGGGTGCAGGTGCAAAGGCTCGATGTTCCTGAGGAAGGCCT
GATGGTGTGGTTGCGCAATTTCGGGCCGGTCAAGCTGTTTCGCACGCGACTGAAAGACCAGTTGCGCCATTACTTGGCTTGCCTGCCCGATGCCCAGGGC
TACAGCACCTTCGGGCGCCTGAACTTTCAAAAGCTGCATGACCAGCATTGGGGAATTGAACAATATCACCGCCTGCTCAAGCAGGTCTGCAACGTCGAGC
GTTTCCAGGTGCGCGGCAAAGTGCCCATACTGAACCATATCTTTGCCGCGCTGTGCAGCTTTGTGCAGTTGCAGGAAATGCGGTTCACCCACGCCATTGT
CAACGCCTACCAATGGAAGACAGAATTGTTTACCCAGGTAGTCGCCACTTTTGTCACGGGGTTCATTCCTGGCAAAAAACACTTGAACCCACAATTTCGT
ACGACTGTCAATGCGTAAGTCCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa751118+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKPTRPPTARCTLPMYMGFLMSEPKSSTCTRLSQVMGISHDSVNRFLLRESYEPKDLFDEAQKLLDMVGGTLNVDDTTLDKPYSQKMALVGHFWSGKHR
RAVKGLNLVTLYYTDVQGRSLPVNYRVYDKADDKTKNDYFQDMLAEVLAWGLRPAFATGDSWYSCEKNLKTVKNHQMGLMFAVEANRTVSVEKGTWVQVQ
RLDVPEEGLMVWLRNFGPVKLFRTRLKDQLRHYLACLPDAQGYSTFGRLNFQKLHDQHWGIEQYHRLLKQVCNVERFQVRGKVPILNHIFAALCSFVQLQ
EMRFTHAIVNAYQWKTELFTQVVATFVTGFIPGKKHLNPQFRTTVNA

 

Blast result :
Comments
ISPna6 is 70% aa similar to ISAba11.
References
1] Kumar Rajakumar (2011) Direct submission.
2] Yagi,J.M., Sims,D., Brettin,T., Bruce,D. and Madsen,E.L. (2009) Environ. Microbiol. 11 (9), 2253-2270.