ISPsa2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HM563000 ND Piscirickettsia salmonis
Piscirickettsia salmonis LF-89
DNA section
IS Length : 863 bp

Ends


IR Length : 17/19

IRL : GGCACTGTTGCGAAAAATTTAGATTTGAGTATGGTGTAGCAATCAACTGA
IRR : GGCACTGTTGCGAAAAGTTATCGTGAGTTTCAGAAAGGTTATTTTCTTGT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTTAAAGGNNNNNNNNNN0

DNA sequence

GGCACTGTTGCGAAAAATTTAGATTTGAGTATGGTGTAGCAATCAACTGAAATTAAGAGTGAATTACTGTGGCTAGACGTAAACGATTTAAGAAGAATCA
ACCCTTTAAATGGAAGCACTACTCTGGTGAGATCATTCTTTGGTTGGTGCGCTGGTATGGCCGCTATGCTTTGTCTTATCGTGACCTCAAAGAAATGACA
GGTGAAAGAGGTCTTGAGCTTGAACGTTCAACAATCTGTCGTTGGGTTCATGAATATGGACCTGAAATCGCTAAACGGTTACGGCCCCACTTTCGTCAAA
CGTGTGCCTCTTGGCGGCTGGATGAAACGCTGGTTAAAATTAAAGGGCGCTGGTATTACCTTTATCGAGCGATTGATAAATATGGCCATACTTTGGATTG
GATGCTCAGTCGTCAGCAAAATGCTAAAGCGGCCTTGCGCTTTTTCAAAAAGGCAATAGCCCAACCTTATGTGAAATCACCGCGTGTTGTGAATGTCGAT
AAACACGCTTCATTTCCACCCGCTCATCAAAAAGCCAAAGATGAAGTTGTCTTTTCTAGGCGATGTAAACTCAGGCGAGTGAAGTATTTAAATAACTGCA
TTGAAAATGATCACAAAGCGATAAAGCGCAAATCCCGTTTTCGCCAATGGTACCAATCACTTTCTACAGCACGATCTACCATTGATGTGATGGAAGCAAT
GCGTATGGTTCAAAAAGGTCAATTACGTTATATTAAAAAGCAGGATATCTGCGCCCAAAACCAGCTCATTGATAAATTATTTGGATTAGCTGCTTAATTC
TAAGGTAGCTAACACAAGAAAATAACCTTTCTGAAACTCACGATAACTTTTCGCAACAGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
729 bp242 aa69797+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEMTGERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYR
AIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEVVFSRRCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLST
ARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAA

 

Blast result :
Comments
ISPsa2 is 68% aa similar to ISAcma1.
References
1] ISfinder submission (2014)
2] Marshall,S.H., Henriquez,V., Gomez,F.A. and Cardenas,C. (2011) FEMS Microbiol. Lett. 314 (1), 18-24.