ISPsa2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HM563000 | ND | Piscirickettsia salmonis | Piscirickettsia salmonis LF-89 |
DNA section
IS Length : 863 bp
Ends
IR Length : 17/19
IRL : GGCACTGTTGCGAAAAATTTAGATTTGAGTATGGTGTAGCAATCAACTGA
IRR : GGCACTGTTGCGAAAAGTTATCGTGAGTTTCAGAAAGGTTATTTTCTTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTTAAAGG | NNNNNNNNNN | 0 |
DNA sequence
GGCACTGTTGCGAAAAATTTAGATTTGAGTATGGTGTAGCAATCAACTGAAATTAAGAGTGAATTACTGTGGCTAGACGTAAACGATTTAAGAAGAATCA
ACCCTTTAAATGGAAGCACTACTCTGGTGAGATCATTCTTTGGTTGGTGCGCTGGTATGGCCGCTATGCTTTGTCTTATCGTGACCTCAAAGAAATGACA
GGTGAAAGAGGTCTTGAGCTTGAACGTTCAACAATCTGTCGTTGGGTTCATGAATATGGACCTGAAATCGCTAAACGGTTACGGCCCCACTTTCGTCAAA
CGTGTGCCTCTTGGCGGCTGGATGAAACGCTGGTTAAAATTAAAGGGCGCTGGTATTACCTTTATCGAGCGATTGATAAATATGGCCATACTTTGGATTG
GATGCTCAGTCGTCAGCAAAATGCTAAAGCGGCCTTGCGCTTTTTCAAAAAGGCAATAGCCCAACCTTATGTGAAATCACCGCGTGTTGTGAATGTCGAT
AAACACGCTTCATTTCCACCCGCTCATCAAAAAGCCAAAGATGAAGTTGTCTTTTCTAGGCGATGTAAACTCAGGCGAGTGAAGTATTTAAATAACTGCA
TTGAAAATGATCACAAAGCGATAAAGCGCAAATCCCGTTTTCGCCAATGGTACCAATCACTTTCTACAGCACGATCTACCATTGATGTGATGGAAGCAAT
GCGTATGGTTCAAAAAGGTCAATTACGTTATATTAAAAAGCAGGATATCTGCGCCCAAAACCAGCTCATTGATAAATTATTTGGATTAGCTGCTTAATTC
TAAGGTAGCTAACACAAGAAAATAACCTTTCTGAAACTCACGATAACTTTTCGCAACAGTGCC
ACCCTTTAAATGGAAGCACTACTCTGGTGAGATCATTCTTTGGTTGGTGCGCTGGTATGGCCGCTATGCTTTGTCTTATCGTGACCTCAAAGAAATGACA
GGTGAAAGAGGTCTTGAGCTTGAACGTTCAACAATCTGTCGTTGGGTTCATGAATATGGACCTGAAATCGCTAAACGGTTACGGCCCCACTTTCGTCAAA
CGTGTGCCTCTTGGCGGCTGGATGAAACGCTGGTTAAAATTAAAGGGCGCTGGTATTACCTTTATCGAGCGATTGATAAATATGGCCATACTTTGGATTG
GATGCTCAGTCGTCAGCAAAATGCTAAAGCGGCCTTGCGCTTTTTCAAAAAGGCAATAGCCCAACCTTATGTGAAATCACCGCGTGTTGTGAATGTCGAT
AAACACGCTTCATTTCCACCCGCTCATCAAAAAGCCAAAGATGAAGTTGTCTTTTCTAGGCGATGTAAACTCAGGCGAGTGAAGTATTTAAATAACTGCA
TTGAAAATGATCACAAAGCGATAAAGCGCAAATCCCGTTTTCGCCAATGGTACCAATCACTTTCTACAGCACGATCTACCATTGATGTGATGGAAGCAAT
GCGTATGGTTCAAAAAGGTCAATTACGTTATATTAAAAAGCAGGATATCTGCGCCCAAAACCAGCTCATTGATAAATTATTTGGATTAGCTGCTTAATTC
TAAGGTAGCTAACACAAGAAAATAACCTTTCTGAAACTCACGATAACTTTTCGCAACAGTGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
729 bp | 242 aa | 69 | 797 | + | No |
Chemistry : DDE
ORF sequence :
MARRKRFKKNQPFKWKHYSGEIILWLVRWYGRYALSYRDLKEMTGERGLELERSTICRWVHEYGPEIAKRLRPHFRQTCASWRLDETLVKIKGRWYYLYR
AIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEVVFSRRCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLST
ARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAA
AIDKYGHTLDWMLSRQQNAKAALRFFKKAIAQPYVKSPRVVNVDKHASFPPAHQKAKDEVVFSRRCKLRRVKYLNNCIENDHKAIKRKSRFRQWYQSLST
ARSTIDVMEAMRMVQKGQLRYIKKQDICAQNQLIDKLFGLAA
Blast result :
Comments
ISPsa2 is 68% aa similar to ISAcma1.
References
1] ISfinder submission (2014)
2] Marshall,S.H., Henriquez,V., Gomez,F.A. and Cardenas,C. (2011) FEMS Microbiol. Lett. 314 (1), 18-24.
2] Marshall,S.H., Henriquez,V., Gomez,F.A. and Cardenas,C. (2011) FEMS Microbiol. Lett. 314 (1), 18-24.