ISPsp6
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KJ920383 | Y | Pseudomonas sp. | Pseudomonas sp. LM14 Pseudomonas sp. LM12 Pseudomonas sp. LM8 Pseudomonas sp. ZM2 Pseudomonas sp. LM13 Pseudomonas sp. ZM1 Pseudomonas stutzeri 19SMN4 Pseudomonas sp. LM5 Pseudomonas sp. LM6 Pseudomonas sp. LM7 Pseudomonas sp. LM10 Pseudomonas sp. LM11 |
DNA section
IS Length : 1210 bp
Ends
IR Length : 18/22
IRL : GGAGACACTGCATAAATAGCCAGCCGCCCCCACCCTTGGCACACTGAGCC
IRR : GGAGACGCTGAACAATTAGCCAATTCTCACCGTCCCCCTTTTTCAACCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATTCTATC | CTAA | AAGACCAAAC | 4 |
DNA sequence
GGAGACACTGCATAAATAGCCAGCCGCCCCCACCCTTGGCACACTGAGCCCCCTCAACCAGCCCCCTCCATGAGCTTTGTTACGCGCGTGCAGAAGACCT
TCTCCGAACTCGAATATACCGGCAAGAAAAAGCAGACTCGCCGAGATCGCTTCCTGGCTGACCTTGAACAGCTGGTGCCCTGGGCACAAGTGGAGGCGCA
AGTGGCGCCGTTCTATAGCGACACCACAGGCAAGCGTGGACGCCCTGCGATTGGGTTGTCGCGCATGCTGCGCATGTATGTCGTGCAGCAGTGTTTCGGT
CTCTCCGATGAAGGTACCGAAGATGCCGTCTACGACAGCCAGGCCATTCGTGGTTTCATCGGCATCGACCTGGGCCGTGAGTCGGCACCGGATGCCACTA
CCTTGTTGCGATTTCGCCGCTTGCTGGAAACCCATCAGCTAACGCGGGTGCTGTTTGAAACGATTAACCAGCATCTGGCCAGCCGGGGTCTGCTGCTCAA
GGAAGGCACTATCGTCGACGCTACCCTGATCGCCGCGCCGCCCTCGGTCAAGAACCGAGAAGGTAAGCGTGATCCTGAGATGCATCAGGCCAAGAAAGGC
AATCAATGGCACTTCGGGATGAAGGCCCACGTTGGTGTCGACGCCACATCGGGACTCGTGCACAGCGTGGTAGGGACTGCCGCCAACGTGGCGGATGTCA
CCCAGGTCGATCAGTTGCTGCACGGCGCCGAAACCTATGTTTCGGGTGACGCTGGATACACTGGTGCGGCCAAGCGACCGGAGCATGCTGAACGGGACGT
TGTCTGGTCGATTGCAGCACGGCCAAGCAGTTACAAACATCACGGCAGAGACAGCGTGCTGTACCGAGTCAAGCGCAAAGTCGAATACGCCAAGGCGCAG
CTGCGTGCCAAGGTCGAGCATCCCTTCCAGGTGATCAAGGTGCGCTTCAATCATCGTAAGGTTCGCTACCGTGGACTGGAAAAGAATACGGCGCAGTTGT
TCAGTCTGTTTGGGTTGGCCAATCTGGTACTGGCCAAGCGGTATTTGCAACGGACGGCGGGATAAGTCCGTCCGAAAGGCGGGGCTGGCCCGCTAATCAG
CAAAATCAGGGTAGAAATCGGCCCAAGAAACGCAGAATAAGGCCGGTAGGTTGAAAAAACCGGGTTGAAAAAGGGGGACGGTGAGAATTGGCTAATTGTT
CAGCGTCTCC
TCTCCGAACTCGAATATACCGGCAAGAAAAAGCAGACTCGCCGAGATCGCTTCCTGGCTGACCTTGAACAGCTGGTGCCCTGGGCACAAGTGGAGGCGCA
AGTGGCGCCGTTCTATAGCGACACCACAGGCAAGCGTGGACGCCCTGCGATTGGGTTGTCGCGCATGCTGCGCATGTATGTCGTGCAGCAGTGTTTCGGT
CTCTCCGATGAAGGTACCGAAGATGCCGTCTACGACAGCCAGGCCATTCGTGGTTTCATCGGCATCGACCTGGGCCGTGAGTCGGCACCGGATGCCACTA
CCTTGTTGCGATTTCGCCGCTTGCTGGAAACCCATCAGCTAACGCGGGTGCTGTTTGAAACGATTAACCAGCATCTGGCCAGCCGGGGTCTGCTGCTCAA
GGAAGGCACTATCGTCGACGCTACCCTGATCGCCGCGCCGCCCTCGGTCAAGAACCGAGAAGGTAAGCGTGATCCTGAGATGCATCAGGCCAAGAAAGGC
AATCAATGGCACTTCGGGATGAAGGCCCACGTTGGTGTCGACGCCACATCGGGACTCGTGCACAGCGTGGTAGGGACTGCCGCCAACGTGGCGGATGTCA
CCCAGGTCGATCAGTTGCTGCACGGCGCCGAAACCTATGTTTCGGGTGACGCTGGATACACTGGTGCGGCCAAGCGACCGGAGCATGCTGAACGGGACGT
TGTCTGGTCGATTGCAGCACGGCCAAGCAGTTACAAACATCACGGCAGAGACAGCGTGCTGTACCGAGTCAAGCGCAAAGTCGAATACGCCAAGGCGCAG
CTGCGTGCCAAGGTCGAGCATCCCTTCCAGGTGATCAAGGTGCGCTTCAATCATCGTAAGGTTCGCTACCGTGGACTGGAAAAGAATACGGCGCAGTTGT
TCAGTCTGTTTGGGTTGGCCAATCTGGTACTGGCCAAGCGGTATTTGCAACGGACGGCGGGATAAGTCCGTCCGAAAGGCGGGGCTGGCCCGCTAATCAG
CAAAATCAGGGTAGAAATCGGCCCAAGAAACGCAGAATAAGGCCGGTAGGTTGAAAAAACCGGGTTGAAAAAGGGGGACGGTGAGAATTGGCTAATTGTT
CAGCGTCTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
996 bp | 331 aa | 70 | 1065 | + | No |
Chemistry : DDE
ORF sequence :
MSFVTRVQKTFSELEYTGKKKQTRRDRFLADLEQLVPWAQVEAQVAPFYSDTTGKRGRPAIGLSRMLRMYVVQQCFGLSDEGTEDAVYDSQAIRGFIGID
LGRESAPDATTLLRFRRLLETHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQAKKGNQWHFGMKAHVGVDATSGLVHSV
VGTAANVADVTQVDQLLHGAETYVSGDAGYTGAAKRPEHAERDVVWSIAARPSSYKHHGRDSVLYRVKRKVEYAKAQLRAKVEHPFQVIKVRFNHRKVRY
RGLEKNTAQLFSLFGLANLVLAKRYLQRTAG
LGRESAPDATTLLRFRRLLETHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQAKKGNQWHFGMKAHVGVDATSGLVHSV
VGTAANVADVTQVDQLLHGAETYVSGDAGYTGAAKRPEHAERDVVWSIAARPSSYKHHGRDSVLYRVKRKVEYAKAQLRAKVEHPFQVIKVRFNHRKVRY
RGLEKNTAQLFSLFGLANLVLAKRYLQRTAG
Blast result :
Comments
ISPsp6 is 97% aa similar to IS52. ISPsp6 has been identified by its transposition to entrapment vector pMAT1 (sacB cassette). As judged from DNA hybridization analysis ISPsp6 is present in 4 copies in the genome of Pseudomonas sp. ZM1. Homologous sequences were also detected by DNA hybridization in Pseudomonas sp. LM5, Pseudomonas sp. LM6, Pseudomonas sp. LM7, Pseudomonas sp. LM8, Pseudomonas sp. LM10, Pseudomonas sp. LM11, Pseudomonas sp. LM12, Pseudomonas sp. LM13, Pseudomonas sp. LM14, Pseudomonas sp. ZM1, Pseudomonas sp. ZM2.
References
1] Szuplewska, M., and Bartosik, D. (2014) Direct submission.