ISPsp6

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KJ920383 Y Pseudomonas sp.
Pseudomonas sp. LM14
Pseudomonas sp. LM12
Pseudomonas sp. LM8
Pseudomonas sp. ZM2
Pseudomonas sp. LM13
Pseudomonas sp. ZM1
Pseudomonas stutzeri 19SMN4
Pseudomonas sp. LM5
Pseudomonas sp. LM6
Pseudomonas sp. LM7
Pseudomonas sp. LM10
Pseudomonas sp. LM11
DNA section
IS Length : 1210 bp

Ends


IR Length : 18/22

IRL : GGAGACACTGCATAAATAGCCAGCCGCCCCCACCCTTGGCACACTGAGCC
IRR : GGAGACGCTGAACAATTAGCCAATTCTCACCGTCCCCCTTTTTCAACCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGATTCTATCCTAAAAGACCAAAC4

DNA sequence

GGAGACACTGCATAAATAGCCAGCCGCCCCCACCCTTGGCACACTGAGCCCCCTCAACCAGCCCCCTCCATGAGCTTTGTTACGCGCGTGCAGAAGACCT
TCTCCGAACTCGAATATACCGGCAAGAAAAAGCAGACTCGCCGAGATCGCTTCCTGGCTGACCTTGAACAGCTGGTGCCCTGGGCACAAGTGGAGGCGCA
AGTGGCGCCGTTCTATAGCGACACCACAGGCAAGCGTGGACGCCCTGCGATTGGGTTGTCGCGCATGCTGCGCATGTATGTCGTGCAGCAGTGTTTCGGT
CTCTCCGATGAAGGTACCGAAGATGCCGTCTACGACAGCCAGGCCATTCGTGGTTTCATCGGCATCGACCTGGGCCGTGAGTCGGCACCGGATGCCACTA
CCTTGTTGCGATTTCGCCGCTTGCTGGAAACCCATCAGCTAACGCGGGTGCTGTTTGAAACGATTAACCAGCATCTGGCCAGCCGGGGTCTGCTGCTCAA
GGAAGGCACTATCGTCGACGCTACCCTGATCGCCGCGCCGCCCTCGGTCAAGAACCGAGAAGGTAAGCGTGATCCTGAGATGCATCAGGCCAAGAAAGGC
AATCAATGGCACTTCGGGATGAAGGCCCACGTTGGTGTCGACGCCACATCGGGACTCGTGCACAGCGTGGTAGGGACTGCCGCCAACGTGGCGGATGTCA
CCCAGGTCGATCAGTTGCTGCACGGCGCCGAAACCTATGTTTCGGGTGACGCTGGATACACTGGTGCGGCCAAGCGACCGGAGCATGCTGAACGGGACGT
TGTCTGGTCGATTGCAGCACGGCCAAGCAGTTACAAACATCACGGCAGAGACAGCGTGCTGTACCGAGTCAAGCGCAAAGTCGAATACGCCAAGGCGCAG
CTGCGTGCCAAGGTCGAGCATCCCTTCCAGGTGATCAAGGTGCGCTTCAATCATCGTAAGGTTCGCTACCGTGGACTGGAAAAGAATACGGCGCAGTTGT
TCAGTCTGTTTGGGTTGGCCAATCTGGTACTGGCCAAGCGGTATTTGCAACGGACGGCGGGATAAGTCCGTCCGAAAGGCGGGGCTGGCCCGCTAATCAG
CAAAATCAGGGTAGAAATCGGCCCAAGAAACGCAGAATAAGGCCGGTAGGTTGAAAAAACCGGGTTGAAAAAGGGGGACGGTGAGAATTGGCTAATTGTT
CAGCGTCTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
996 bp331 aa701065+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSFVTRVQKTFSELEYTGKKKQTRRDRFLADLEQLVPWAQVEAQVAPFYSDTTGKRGRPAIGLSRMLRMYVVQQCFGLSDEGTEDAVYDSQAIRGFIGID
LGRESAPDATTLLRFRRLLETHQLTRVLFETINQHLASRGLLLKEGTIVDATLIAAPPSVKNREGKRDPEMHQAKKGNQWHFGMKAHVGVDATSGLVHSV
VGTAANVADVTQVDQLLHGAETYVSGDAGYTGAAKRPEHAERDVVWSIAARPSSYKHHGRDSVLYRVKRKVEYAKAQLRAKVEHPFQVIKVRFNHRKVRY
RGLEKNTAQLFSLFGLANLVLAKRYLQRTAG

 

Blast result :
Comments
ISPsp6 is 97% aa similar to IS52. ISPsp6 has been identified by its transposition to entrapment vector pMAT1 (sacB cassette). As judged from DNA hybridization analysis ISPsp6 is present in 4 copies in the genome of Pseudomonas sp. ZM1. Homologous sequences were also detected by DNA hybridization in Pseudomonas sp. LM5, Pseudomonas sp. LM6, Pseudomonas sp. LM7, Pseudomonas sp. LM8, Pseudomonas sp. LM10, Pseudomonas sp. LM11, Pseudomonas sp. LM12, Pseudomonas sp. LM13, Pseudomonas sp. LM14, Pseudomonas sp. ZM1, Pseudomonas sp. ZM2.
References
1] Szuplewska, M., and Bartosik, D. (2014) Direct submission.