ISNamo19

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1901 bp

Ends


Left end : CTTTTTTCAAGGCAAGAATCCCGCCCTTCAGGGCGGGCGTGAAGCCGACAACTGCCTCACGTTCCACCGTCGGTTGCAGGCCGAATACCCCACGACGGCA II struct. : No
Right end : TGGTATTCCCCATGCATGGGAAGCCTCGCCGTCGCCGGGCTTCGCCCGGCTGCTTGAGGGATCTTCAGTCCCTCTCCGTTTACGGCGAGGAGGATGTCAC II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AGTGACGGCCGGCTATCGGCAGGCTTCG
CTCCGATCTCTACTATAATTTCAAGACG

DNA sequence

CTTTTTTCAAGGCAAGAATCCCGCCCTTCAGGGCGGGCGTGAAGCCGACAACTGCCTCACGTTCCACCGTCGGTTGCAGGCCGAATACCCCACGACGGCA
AAACTTTATTAGAATTGGGTATGTAGAAATCAGTACGGCCAAATGAAGTATAACCTCGAAACCGGGTCGCACACAGTCTACGCGCTCCAATATCACTTTG
TAACCGTCACAAAGTACCGCGCGGACATCCTCACCGACGAGATAGCCGAACGCATCGGTGAAATTGCCAGCGACATCACCGAGGATTTCGGCGTGAGCAT
CCAGAACGTCAACGGCGGTTCCGACCACGTTCACATCCTGTTCACGGCGAAGCCTACGACCAACCTCACCAAGTTCATCAACTCCCTCAAGGGCGTCACG
TCCCGCAAAATCCGTGACGAGAACCCCGAGGTTCGGCAGGCGCTCGACAAGGCGTTCTGGCAACCGGGGTACTTCCTCGCTACTACTGGCCAAGTGAGCA
TCGACGTGCTGATGAAGTACGTGGAGAAACAGTAGCGTGTCTCCGACCGTCACGAAGACGTTGCAGGCGACGTTCGCGCCACCTACCGCGCACAAACAGG
AGAAACTGAACGACCTACTCGACACGTACCGTGACGGCCTGCAAGAAGCGTTCGACGCCGGGGCGAGTACCATGTCGTCGGTGAGCGACATCGTGACGCC
CTACGACCTGCCGTATCAGGCCAAAGCCGCACTCTGCAACTACATCCCGAAACTCCGCAAGACGTACAACGCGCAGGAGTTGGACGACGAACACCCGGTT
CGGCTCACCAACCAAGCCGCGACGTTCGACCACTCGGAGGAGCGCGACTACGAGTTCACATGGTGGGTCCCCCGACCGGGGCGCGGGACGAACTTCTGGA
TACCGCTCCGCATCAACCCCGAACAGGAGGGGCTCTGGCACGACCTCGTATCGGAGGACGCGAAAGCGGGCGAGATACGGCTTCAACAGCACCGAACGAA
CTGGGTACTGCACGTCACCGTCGAGTACCCGGTCGAAGAACCAGTGGCGGACAGTGACATCACGCACATCGGCTTAGACATCGGAGAAACTGCCCTCATC
ACGGGCTGTGCCCTCAAGGACGGTTCTCCGACTGACCCGCTTGTGCGTAGCGGAAGCAGAGCGAAGCATCTCCGCAAAGAGATGTACACGACCCTGAAAC
GACTCCAAGAGCGTGACGCATCCGAGTGGCGTACCGACGAACGGTTTGCCCACTACCAGAACGCGCTCACCGACATCGTGGAGAAAGCGTCTCGGGAAGC
CATCGAGTACGCCCAACAGTTCGAGAATCCGGTGTTGGTGATGGAGGACTTGACGTACATCCGTGAGCGTCTCGACTACGGGAAGTACATGAACCGTCGG
CTTCACTCGTGGGCGTTTGCTCGACTGCAAGGGCGCATCGAGGACAAGGCGACGGAAGCAGGTATCCCGGTCGAGTACGTGAATCCGGCGTACACTTCGC
AGACGTGCCACTCGTGCCACCGCATCGGTCGGCGGGACTCCCAAGCCGAGTTCCGGTGTCCGCACGACGACTGCCACGTTTCGACGTTTCAGGCCGACAT
CAACGCTTCCGCGAATATCGCACGACGGGTTGACCCGTGGGGAGAGAGCGTCCCGCTTGACAAGGCCGGACGCGATGACTCGCCTCGGGATGGGAGTCGT
AGTGACACGGCCACGACTCACCGTGAGACGAGCGCACCAGCGCAGATGACACTCACGGCCTACGAAGAGTCGAAACCCTCTACCAGCGACGACTGACTGG
TATTCCCCATGCATGGGAAGCCTCGCCGTCGCCGGGCTTCGCCCGGCTGCTTGAGGGATCTTCAGTCCCTCTCCGTTTACGGCGAGGAGGATGTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
393 bp130 aa143535+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MKYNLETGSHTVYALQYHFVTVTKYRADILTDEIAERIGEIASDITEDFGVSIQNVNGGSDHVHILFTAKPTTNLTKFINSLKGVTSRKIRDENPEVRQA
LDKAFWQPGYFLATTGQVSIDVLMKYVEKQ

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1260 bp419 aa5371796+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MSPTVTKTLQATFAPPTAHKQEKLNDLLDTYRDGLQEAFDAGASTMSSVSDIVTPYDLPYQAKAALCNYIPKLRKTYNAQELDDEHPVRLTNQAATFDHS
EERDYEFTWWVPRPGRGTNFWIPLRINPEQEGLWHDLVSEDAKAGEIRLQQHRTNWVLHVTVEYPVEEPVADSDITHIGLDIGETALITGCALKDGSPTD
PLVRSGSRAKHLRKEMYTTLKRLQERDASEWRTDERFAHYQNALTDIVEKASREAIEYAQQFENPVLVMEDLTYIRERLDYGKYMNRRLHSWAFARLQGR
IEDKATEAGIPVEYVNPAYTSQTCHSCHRIGRRDSQAEFRCPHDDCHVSTFQADINASANIARRVDPWGESVPLDKAGRDDSPRDGSRSDTATTHRETSA
PAQMTLTAYEESKPSTSDD

 

Blast result :
Comments
ISNamo19 is 99% aa (TnpA : the transposase) and 95% aa (TnpB) similar to ISHal1.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513