ISNamo19
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1901 bp
Ends
Left end : CTTTTTTCAAGGCAAGAATCCCGCCCTTCAGGGCGGGCGTGAAGCCGACAACTGCCTCACGTTCCACCGTCGGTTGCAGGCCGAATACCCCACGACGGCA II struct. : No
Right end : TGGTATTCCCCATGCATGGGAAGCCTCGCCGTCGCCGGGCTTCGCCCGGCTGCTTGAGGGATCTTCAGTCCCTCTCCGTTTACGGCGAGGAGGATGTCAC II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AGTGACGGCCGG | CTAT | CGGCAGGCTTCG | |
CTCCGATCTCTA | CTAT | AATTTCAAGACG |
DNA sequence
CTTTTTTCAAGGCAAGAATCCCGCCCTTCAGGGCGGGCGTGAAGCCGACAACTGCCTCACGTTCCACCGTCGGTTGCAGGCCGAATACCCCACGACGGCA
AAACTTTATTAGAATTGGGTATGTAGAAATCAGTACGGCCAAATGAAGTATAACCTCGAAACCGGGTCGCACACAGTCTACGCGCTCCAATATCACTTTG
TAACCGTCACAAAGTACCGCGCGGACATCCTCACCGACGAGATAGCCGAACGCATCGGTGAAATTGCCAGCGACATCACCGAGGATTTCGGCGTGAGCAT
CCAGAACGTCAACGGCGGTTCCGACCACGTTCACATCCTGTTCACGGCGAAGCCTACGACCAACCTCACCAAGTTCATCAACTCCCTCAAGGGCGTCACG
TCCCGCAAAATCCGTGACGAGAACCCCGAGGTTCGGCAGGCGCTCGACAAGGCGTTCTGGCAACCGGGGTACTTCCTCGCTACTACTGGCCAAGTGAGCA
TCGACGTGCTGATGAAGTACGTGGAGAAACAGTAGCGTGTCTCCGACCGTCACGAAGACGTTGCAGGCGACGTTCGCGCCACCTACCGCGCACAAACAGG
AGAAACTGAACGACCTACTCGACACGTACCGTGACGGCCTGCAAGAAGCGTTCGACGCCGGGGCGAGTACCATGTCGTCGGTGAGCGACATCGTGACGCC
CTACGACCTGCCGTATCAGGCCAAAGCCGCACTCTGCAACTACATCCCGAAACTCCGCAAGACGTACAACGCGCAGGAGTTGGACGACGAACACCCGGTT
CGGCTCACCAACCAAGCCGCGACGTTCGACCACTCGGAGGAGCGCGACTACGAGTTCACATGGTGGGTCCCCCGACCGGGGCGCGGGACGAACTTCTGGA
TACCGCTCCGCATCAACCCCGAACAGGAGGGGCTCTGGCACGACCTCGTATCGGAGGACGCGAAAGCGGGCGAGATACGGCTTCAACAGCACCGAACGAA
CTGGGTACTGCACGTCACCGTCGAGTACCCGGTCGAAGAACCAGTGGCGGACAGTGACATCACGCACATCGGCTTAGACATCGGAGAAACTGCCCTCATC
ACGGGCTGTGCCCTCAAGGACGGTTCTCCGACTGACCCGCTTGTGCGTAGCGGAAGCAGAGCGAAGCATCTCCGCAAAGAGATGTACACGACCCTGAAAC
GACTCCAAGAGCGTGACGCATCCGAGTGGCGTACCGACGAACGGTTTGCCCACTACCAGAACGCGCTCACCGACATCGTGGAGAAAGCGTCTCGGGAAGC
CATCGAGTACGCCCAACAGTTCGAGAATCCGGTGTTGGTGATGGAGGACTTGACGTACATCCGTGAGCGTCTCGACTACGGGAAGTACATGAACCGTCGG
CTTCACTCGTGGGCGTTTGCTCGACTGCAAGGGCGCATCGAGGACAAGGCGACGGAAGCAGGTATCCCGGTCGAGTACGTGAATCCGGCGTACACTTCGC
AGACGTGCCACTCGTGCCACCGCATCGGTCGGCGGGACTCCCAAGCCGAGTTCCGGTGTCCGCACGACGACTGCCACGTTTCGACGTTTCAGGCCGACAT
CAACGCTTCCGCGAATATCGCACGACGGGTTGACCCGTGGGGAGAGAGCGTCCCGCTTGACAAGGCCGGACGCGATGACTCGCCTCGGGATGGGAGTCGT
AGTGACACGGCCACGACTCACCGTGAGACGAGCGCACCAGCGCAGATGACACTCACGGCCTACGAAGAGTCGAAACCCTCTACCAGCGACGACTGACTGG
TATTCCCCATGCATGGGAAGCCTCGCCGTCGCCGGGCTTCGCCCGGCTGCTTGAGGGATCTTCAGTCCCTCTCCGTTTACGGCGAGGAGGATGTCAC
AAACTTTATTAGAATTGGGTATGTAGAAATCAGTACGGCCAAATGAAGTATAACCTCGAAACCGGGTCGCACACAGTCTACGCGCTCCAATATCACTTTG
TAACCGTCACAAAGTACCGCGCGGACATCCTCACCGACGAGATAGCCGAACGCATCGGTGAAATTGCCAGCGACATCACCGAGGATTTCGGCGTGAGCAT
CCAGAACGTCAACGGCGGTTCCGACCACGTTCACATCCTGTTCACGGCGAAGCCTACGACCAACCTCACCAAGTTCATCAACTCCCTCAAGGGCGTCACG
TCCCGCAAAATCCGTGACGAGAACCCCGAGGTTCGGCAGGCGCTCGACAAGGCGTTCTGGCAACCGGGGTACTTCCTCGCTACTACTGGCCAAGTGAGCA
TCGACGTGCTGATGAAGTACGTGGAGAAACAGTAGCGTGTCTCCGACCGTCACGAAGACGTTGCAGGCGACGTTCGCGCCACCTACCGCGCACAAACAGG
AGAAACTGAACGACCTACTCGACACGTACCGTGACGGCCTGCAAGAAGCGTTCGACGCCGGGGCGAGTACCATGTCGTCGGTGAGCGACATCGTGACGCC
CTACGACCTGCCGTATCAGGCCAAAGCCGCACTCTGCAACTACATCCCGAAACTCCGCAAGACGTACAACGCGCAGGAGTTGGACGACGAACACCCGGTT
CGGCTCACCAACCAAGCCGCGACGTTCGACCACTCGGAGGAGCGCGACTACGAGTTCACATGGTGGGTCCCCCGACCGGGGCGCGGGACGAACTTCTGGA
TACCGCTCCGCATCAACCCCGAACAGGAGGGGCTCTGGCACGACCTCGTATCGGAGGACGCGAAAGCGGGCGAGATACGGCTTCAACAGCACCGAACGAA
CTGGGTACTGCACGTCACCGTCGAGTACCCGGTCGAAGAACCAGTGGCGGACAGTGACATCACGCACATCGGCTTAGACATCGGAGAAACTGCCCTCATC
ACGGGCTGTGCCCTCAAGGACGGTTCTCCGACTGACCCGCTTGTGCGTAGCGGAAGCAGAGCGAAGCATCTCCGCAAAGAGATGTACACGACCCTGAAAC
GACTCCAAGAGCGTGACGCATCCGAGTGGCGTACCGACGAACGGTTTGCCCACTACCAGAACGCGCTCACCGACATCGTGGAGAAAGCGTCTCGGGAAGC
CATCGAGTACGCCCAACAGTTCGAGAATCCGGTGTTGGTGATGGAGGACTTGACGTACATCCGTGAGCGTCTCGACTACGGGAAGTACATGAACCGTCGG
CTTCACTCGTGGGCGTTTGCTCGACTGCAAGGGCGCATCGAGGACAAGGCGACGGAAGCAGGTATCCCGGTCGAGTACGTGAATCCGGCGTACACTTCGC
AGACGTGCCACTCGTGCCACCGCATCGGTCGGCGGGACTCCCAAGCCGAGTTCCGGTGTCCGCACGACGACTGCCACGTTTCGACGTTTCAGGCCGACAT
CAACGCTTCCGCGAATATCGCACGACGGGTTGACCCGTGGGGAGAGAGCGTCCCGCTTGACAAGGCCGGACGCGATGACTCGCCTCGGGATGGGAGTCGT
AGTGACACGGCCACGACTCACCGTGAGACGAGCGCACCAGCGCAGATGACACTCACGGCCTACGAAGAGTCGAAACCCTCTACCAGCGACGACTGACTGG
TATTCCCCATGCATGGGAAGCCTCGCCGTCGCCGGGCTTCGCCCGGCTGCTTGAGGGATCTTCAGTCCCTCTCCGTTTACGGCGAGGAGGATGTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
393 bp | 130 aa | 143 | 535 | + | No |
Chemistry : Y1
ORF sequence :
MKYNLETGSHTVYALQYHFVTVTKYRADILTDEIAERIGEIASDITEDFGVSIQNVNGGSDHVHILFTAKPTTNLTKFINSLKGVTSRKIRDENPEVRQA
LDKAFWQPGYFLATTGQVSIDVLMKYVEKQ
LDKAFWQPGYFLATTGQVSIDVLMKYVEKQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1260 bp | 419 aa | 537 | 1796 | + | No |
AG : TnpB
ORF sequence :
MSPTVTKTLQATFAPPTAHKQEKLNDLLDTYRDGLQEAFDAGASTMSSVSDIVTPYDLPYQAKAALCNYIPKLRKTYNAQELDDEHPVRLTNQAATFDHS
EERDYEFTWWVPRPGRGTNFWIPLRINPEQEGLWHDLVSEDAKAGEIRLQQHRTNWVLHVTVEYPVEEPVADSDITHIGLDIGETALITGCALKDGSPTD
PLVRSGSRAKHLRKEMYTTLKRLQERDASEWRTDERFAHYQNALTDIVEKASREAIEYAQQFENPVLVMEDLTYIRERLDYGKYMNRRLHSWAFARLQGR
IEDKATEAGIPVEYVNPAYTSQTCHSCHRIGRRDSQAEFRCPHDDCHVSTFQADINASANIARRVDPWGESVPLDKAGRDDSPRDGSRSDTATTHRETSA
PAQMTLTAYEESKPSTSDD
EERDYEFTWWVPRPGRGTNFWIPLRINPEQEGLWHDLVSEDAKAGEIRLQQHRTNWVLHVTVEYPVEEPVADSDITHIGLDIGETALITGCALKDGSPTD
PLVRSGSRAKHLRKEMYTTLKRLQERDASEWRTDERFAHYQNALTDIVEKASREAIEYAQQFENPVLVMEDLTYIRERLDYGKYMNRRLHSWAFARLQGR
IEDKATEAGIPVEYVNPAYTSQTCHSCHRIGRRDSQAEFRCPHDDCHVSTFQADINASANIARRVDPWGESVPLDKAGRDDSPRDGSRSDTATTHRETSA
PAQMTLTAYEESKPSTSDD
Blast result :
Comments
ISNamo19 is 99% aa (TnpA : the transposase) and 95% aa (TnpB) similar to ISHal1.
References
1] Pfeiffer F. (2013) Direct submission.
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D.(2013) Genome Announc. 1: e0009513