ISNamo18

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1885 bp

Ends


Left end : ACATAGTGCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCAAGCGGACAATAGCGTACACATCCACCGACGATAGTACGGCTGGATTTCCCACCGTGTAC II struct. : No
Right end : AGAGACGCTTGGAACGTATGCGTCTTGAAACCTTAGGGCCGCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GCGAGCGCTCCGTGATCGGAGGTCAACG

DNA sequence

ACATAGTGCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCAAGCGGACAATAGCGTACACATCCACCGACGATAGTACGGCTGGATTTCCCACCGTGTAC
GGTAGTTTTAAGACACTCGCTACGTATAGTGTGTAGTACGGATGAAGACCACACGGCACGCAACGTACAACCTCAACTACCACATAGTGTGGATACCGAA
GTACCGTCGGTCGGTACTCGTTGGTGACGTTGCAACCCGTGTGCGAGAAATCCTCCACGAAATCGCTGACGAGAAGGGGTTGGAGATTATCGACCTCACT
ATCCAACCCAACCACATCCACCTGTTCGTCAGTAGCCCGCCGAAGCACGCTCCGTCACTTCTCGCCAACTGGTTCAAAGGCATCAGCTCGCGGAAATACA
ACCACCGCCACGCCGACCACGACAGCGAGAAAATCAAGTGGGCGCGGGGCTACTACGCGGGAACAGCAGGACACGTTTCGAGTGAGACTGTCGAGAAGTA
CATCCAGCGTTGCCAGAACTCATGAGTTCTGGCTGCCTGCCAGATGTAATCTGGCAACGTCACGAGGAGGACGAACAGTGACCGAACTCACCGAGACGCT
GGAACTGAAGCTTGTGGAACCGAACGCCCACAAGCATCGGAAACTCTGTGAGACGAAACAGGCGTACCAAGACGTGCTTGAAGCCGCGTTCAACGCTAAC
TGTACCACGCAGTCGGCGGCCAACGACGTGGTGGTCAGCTACGACCTGAGCGGCTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCTGTGGCG
GAAGCTACGACGCCAAAGAGCTTCACGACGACCACCCTGTTCGGTTCACGAACGAAGGCCCGAAGCTCGACCACAAGCCACAGAATACTATCGAGTGGTA
CGTCAAAATCCCACACCACGACGACTACCACCTCTGGTTGCCCGCGCAACCGAATCCCGAACAGCGCGAGTGGTTGGAAGCGTTGCACGCGGGGGACGCG
AAGATGGGCGAGTGTCGGCTGTTCGACCGCGACGGCGAATGGTACTTCCACATCGTCGCCACGCGGGACGTGGAGGAACGAAAAACCAGTTCGGCGGAAA
CGCCGATTGTGGCAGACATCGGGGAAGCCTCTTTGTTAACGGTGTGTCACCGTGACGAGCGCGGTTCCCCGACTGCTCCCAACCTCTGGAACGACGAAGG
CAAGGCGGTTCGCCAACTCCGTGAGACATACTTCACGGCGACTCGACGCCTTCAAAAACGCGGAAGCGAACGTATCGCTGAATCCTACGGCGACGAGTTG
TGGCGACACATCGACCACATCCTTCACACGGTCACGTCGGAGGTCGTCGCCTACGCCGACCGATTCGAGAATCCCGTGTTGGTTCTGGAAGACTTGACGC
ACATCCGCGAGAACATGGACTACGGTGCGTTCATGAACCGACGGCTTCACGGATGGGGCTTCGCCAAGATGCACGCTCAGATTCGCTACAAAGCGGCTGA
GAAAGGGATTCGTGTGGAGACGGTGAATCCCGCGTACACCTCGAAGACGTGCCACTGTTGTGGTGAGCAGGGCTATCGCCCCGACCAAGCGATGTTCAAG
TGTACCAACTCGGCGTGTTGGGTTTCGGAGTACCAAGCAGACGTTAACGCCGCGCTCAATATTGCAGACCGCTACCTCGGTGGAGAGAGCCATTCAAGAG
AACACACGAATGGCGATGACTCGGCTGAGGAAGGGGGACGTTTGACCGTCCCACAAGACAGCCAAGCCGATGCTGACACCCAGCAAGAGACGCTTGGAAC
GTATGCGTCTTGAAACCTTAGGGCCGCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
384 bp127 aa142525+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MKTTRHATYNLNYHIVWIPKYRRSVLVGDVATRVREILHEIADEKGLEIIDLTIQPNHIHLFVSSPPKHAPSLLANWFKGISSRKYNHRHADHDSEKIKW
ARGYYAGTAGHVSSETVEKYIQRCQNS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1236 bp411 aa5781813+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MTELTETLELKLVEPNAHKHRKLCETKQAYQDVLEAAFNANCTTQSAANDVVVSYDLSGYAKNALKKYVPQLCGGSYDAKELHDDHPVRFTNEGPKLDHK
PQNTIEWYVKIPHHDDYHLWLPAQPNPEQREWLEALHAGDAKMGECRLFDRDGEWYFHIVATRDVEERKTSSAETPIVADIGEASLLTVCHRDERGSPTA
PNLWNDEGKAVRQLRETYFTATRRLQKRGSERIAESYGDELWRHIDHILHTVTSEVVAYADRFENPVLVLEDLTHIRENMDYGAFMNRRLHGWGFAKMHA
QIRYKAAEKGIRVETVNPAYTSKTCHCCGEQGYRPDQAMFKCTNSACWVSEYQADVNAALNIADRYLGGESHSREHTNGDDSAEEGGRLTVPQDSQADAD
TQQETLGTYAS

 

Blast result :
Comments
ISNamo18 is 98% aa (TnpA : the transposase) and 97% aa (TnpB) similar to ISHvo18.
References
1] Pfeiffer F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513