ISNamo18
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1885 bp
Ends
Left end : ACATAGTGCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCAAGCGGACAATAGCGTACACATCCACCGACGATAGTACGGCTGGATTTCCCACCGTGTAC II struct. : No
Right end : AGAGACGCTTGGAACGTATGCGTCTTGAAACCTTAGGGCCGCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GCGAGCGCTCCG | TGAT | CGGAGGTCAACG |
DNA sequence
ACATAGTGCGAGCGCATACCCGCGTCTTCAGGCGCGGGTCAAGCGGACAATAGCGTACACATCCACCGACGATAGTACGGCTGGATTTCCCACCGTGTAC
GGTAGTTTTAAGACACTCGCTACGTATAGTGTGTAGTACGGATGAAGACCACACGGCACGCAACGTACAACCTCAACTACCACATAGTGTGGATACCGAA
GTACCGTCGGTCGGTACTCGTTGGTGACGTTGCAACCCGTGTGCGAGAAATCCTCCACGAAATCGCTGACGAGAAGGGGTTGGAGATTATCGACCTCACT
ATCCAACCCAACCACATCCACCTGTTCGTCAGTAGCCCGCCGAAGCACGCTCCGTCACTTCTCGCCAACTGGTTCAAAGGCATCAGCTCGCGGAAATACA
ACCACCGCCACGCCGACCACGACAGCGAGAAAATCAAGTGGGCGCGGGGCTACTACGCGGGAACAGCAGGACACGTTTCGAGTGAGACTGTCGAGAAGTA
CATCCAGCGTTGCCAGAACTCATGAGTTCTGGCTGCCTGCCAGATGTAATCTGGCAACGTCACGAGGAGGACGAACAGTGACCGAACTCACCGAGACGCT
GGAACTGAAGCTTGTGGAACCGAACGCCCACAAGCATCGGAAACTCTGTGAGACGAAACAGGCGTACCAAGACGTGCTTGAAGCCGCGTTCAACGCTAAC
TGTACCACGCAGTCGGCGGCCAACGACGTGGTGGTCAGCTACGACCTGAGCGGCTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCTGTGGCG
GAAGCTACGACGCCAAAGAGCTTCACGACGACCACCCTGTTCGGTTCACGAACGAAGGCCCGAAGCTCGACCACAAGCCACAGAATACTATCGAGTGGTA
CGTCAAAATCCCACACCACGACGACTACCACCTCTGGTTGCCCGCGCAACCGAATCCCGAACAGCGCGAGTGGTTGGAAGCGTTGCACGCGGGGGACGCG
AAGATGGGCGAGTGTCGGCTGTTCGACCGCGACGGCGAATGGTACTTCCACATCGTCGCCACGCGGGACGTGGAGGAACGAAAAACCAGTTCGGCGGAAA
CGCCGATTGTGGCAGACATCGGGGAAGCCTCTTTGTTAACGGTGTGTCACCGTGACGAGCGCGGTTCCCCGACTGCTCCCAACCTCTGGAACGACGAAGG
CAAGGCGGTTCGCCAACTCCGTGAGACATACTTCACGGCGACTCGACGCCTTCAAAAACGCGGAAGCGAACGTATCGCTGAATCCTACGGCGACGAGTTG
TGGCGACACATCGACCACATCCTTCACACGGTCACGTCGGAGGTCGTCGCCTACGCCGACCGATTCGAGAATCCCGTGTTGGTTCTGGAAGACTTGACGC
ACATCCGCGAGAACATGGACTACGGTGCGTTCATGAACCGACGGCTTCACGGATGGGGCTTCGCCAAGATGCACGCTCAGATTCGCTACAAAGCGGCTGA
GAAAGGGATTCGTGTGGAGACGGTGAATCCCGCGTACACCTCGAAGACGTGCCACTGTTGTGGTGAGCAGGGCTATCGCCCCGACCAAGCGATGTTCAAG
TGTACCAACTCGGCGTGTTGGGTTTCGGAGTACCAAGCAGACGTTAACGCCGCGCTCAATATTGCAGACCGCTACCTCGGTGGAGAGAGCCATTCAAGAG
AACACACGAATGGCGATGACTCGGCTGAGGAAGGGGGACGTTTGACCGTCCCACAAGACAGCCAAGCCGATGCTGACACCCAGCAAGAGACGCTTGGAAC
GTATGCGTCTTGAAACCTTAGGGCCGCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA
GGTAGTTTTAAGACACTCGCTACGTATAGTGTGTAGTACGGATGAAGACCACACGGCACGCAACGTACAACCTCAACTACCACATAGTGTGGATACCGAA
GTACCGTCGGTCGGTACTCGTTGGTGACGTTGCAACCCGTGTGCGAGAAATCCTCCACGAAATCGCTGACGAGAAGGGGTTGGAGATTATCGACCTCACT
ATCCAACCCAACCACATCCACCTGTTCGTCAGTAGCCCGCCGAAGCACGCTCCGTCACTTCTCGCCAACTGGTTCAAAGGCATCAGCTCGCGGAAATACA
ACCACCGCCACGCCGACCACGACAGCGAGAAAATCAAGTGGGCGCGGGGCTACTACGCGGGAACAGCAGGACACGTTTCGAGTGAGACTGTCGAGAAGTA
CATCCAGCGTTGCCAGAACTCATGAGTTCTGGCTGCCTGCCAGATGTAATCTGGCAACGTCACGAGGAGGACGAACAGTGACCGAACTCACCGAGACGCT
GGAACTGAAGCTTGTGGAACCGAACGCCCACAAGCATCGGAAACTCTGTGAGACGAAACAGGCGTACCAAGACGTGCTTGAAGCCGCGTTCAACGCTAAC
TGTACCACGCAGTCGGCGGCCAACGACGTGGTGGTCAGCTACGACCTGAGCGGCTACGCGAAGAACGCGCTCAAGAAGTACGTCCCGCAACTCTGTGGCG
GAAGCTACGACGCCAAAGAGCTTCACGACGACCACCCTGTTCGGTTCACGAACGAAGGCCCGAAGCTCGACCACAAGCCACAGAATACTATCGAGTGGTA
CGTCAAAATCCCACACCACGACGACTACCACCTCTGGTTGCCCGCGCAACCGAATCCCGAACAGCGCGAGTGGTTGGAAGCGTTGCACGCGGGGGACGCG
AAGATGGGCGAGTGTCGGCTGTTCGACCGCGACGGCGAATGGTACTTCCACATCGTCGCCACGCGGGACGTGGAGGAACGAAAAACCAGTTCGGCGGAAA
CGCCGATTGTGGCAGACATCGGGGAAGCCTCTTTGTTAACGGTGTGTCACCGTGACGAGCGCGGTTCCCCGACTGCTCCCAACCTCTGGAACGACGAAGG
CAAGGCGGTTCGCCAACTCCGTGAGACATACTTCACGGCGACTCGACGCCTTCAAAAACGCGGAAGCGAACGTATCGCTGAATCCTACGGCGACGAGTTG
TGGCGACACATCGACCACATCCTTCACACGGTCACGTCGGAGGTCGTCGCCTACGCCGACCGATTCGAGAATCCCGTGTTGGTTCTGGAAGACTTGACGC
ACATCCGCGAGAACATGGACTACGGTGCGTTCATGAACCGACGGCTTCACGGATGGGGCTTCGCCAAGATGCACGCTCAGATTCGCTACAAAGCGGCTGA
GAAAGGGATTCGTGTGGAGACGGTGAATCCCGCGTACACCTCGAAGACGTGCCACTGTTGTGGTGAGCAGGGCTATCGCCCCGACCAAGCGATGTTCAAG
TGTACCAACTCGGCGTGTTGGGTTTCGGAGTACCAAGCAGACGTTAACGCCGCGCTCAATATTGCAGACCGCTACCTCGGTGGAGAGAGCCATTCAAGAG
AACACACGAATGGCGATGACTCGGCTGAGGAAGGGGGACGTTTGACCGTCCCACAAGACAGCCAAGCCGATGCTGACACCCAGCAAGAGACGCTTGGAAC
GTATGCGTCTTGAAACCTTAGGGCCGCGCTCGGCCTGAAATCCCATGGTGGGATTCCCGCGACTTTAGGCGCGGGAGGAGGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
384 bp | 127 aa | 142 | 525 | + | No |
Chemistry : Y1
ORF sequence :
MKTTRHATYNLNYHIVWIPKYRRSVLVGDVATRVREILHEIADEKGLEIIDLTIQPNHIHLFVSSPPKHAPSLLANWFKGISSRKYNHRHADHDSEKIKW
ARGYYAGTAGHVSSETVEKYIQRCQNS
ARGYYAGTAGHVSSETVEKYIQRCQNS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 578 | 1813 | + | No |
AG : TnpB
ORF sequence :
MTELTETLELKLVEPNAHKHRKLCETKQAYQDVLEAAFNANCTTQSAANDVVVSYDLSGYAKNALKKYVPQLCGGSYDAKELHDDHPVRFTNEGPKLDHK
PQNTIEWYVKIPHHDDYHLWLPAQPNPEQREWLEALHAGDAKMGECRLFDRDGEWYFHIVATRDVEERKTSSAETPIVADIGEASLLTVCHRDERGSPTA
PNLWNDEGKAVRQLRETYFTATRRLQKRGSERIAESYGDELWRHIDHILHTVTSEVVAYADRFENPVLVLEDLTHIRENMDYGAFMNRRLHGWGFAKMHA
QIRYKAAEKGIRVETVNPAYTSKTCHCCGEQGYRPDQAMFKCTNSACWVSEYQADVNAALNIADRYLGGESHSREHTNGDDSAEEGGRLTVPQDSQADAD
TQQETLGTYAS
PQNTIEWYVKIPHHDDYHLWLPAQPNPEQREWLEALHAGDAKMGECRLFDRDGEWYFHIVATRDVEERKTSSAETPIVADIGEASLLTVCHRDERGSPTA
PNLWNDEGKAVRQLRETYFTATRRLQKRGSERIAESYGDELWRHIDHILHTVTSEVVAYADRFENPVLVLEDLTHIRENMDYGAFMNRRLHGWGFAKMHA
QIRYKAAEKGIRVETVNPAYTSKTCHCCGEQGYRPDQAMFKCTNSACWVSEYQADVNAALNIADRYLGGESHSREHTNGDDSAEEGGRLTVPQDSQADAD
TQQETLGTYAS
Blast result :
Comments
ISNamo18 is 98% aa (TnpA : the transposase) and 97% aa (TnpB) similar to ISHvo18.
References
1] Pfeiffer F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513