ISLgar5
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AKFO01000017.1 | ND | Lactococus garvieae | Lactococus garvieae IPLA31405 |
DNA section
IS Length : 1336 bp
Ends
IR Length : 21/26
IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGGAGCGTCAATAATTTTGTGTAAATGATTCTTCCCTACTGCAGATTGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACCCAATTG | TTATAATG | AGAACTTTTA | 8 |
DNA sequence
GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAGAGAGGACTTCCCTATGAAC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAGAAAGCAGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTAGATTACGAAAAGTATGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTATGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAATGGTGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGACACGTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATTACTACACGCCCCAAACCATGTCCA
ATATAACAAAATCATTTACAGAAGAGGTAACGGCGTTTAAAGGGCGGGAGCTTCATGACCGTTATGCTGCTATTTATATGGACGCAACGTATATTCCGTT
AAAGCGGAAAACCGTCGCCAAGGAAGCTATTCATATCGCAGTTGGCATTCGCCCGGACGGATCAAAGGAAGTATTGAGCTATGCGATTGCACCGACTGAA
TCCATCACGATTTGGGAGGAAATTTTATTGGACCTTCAAGAGCGCGGTTTGAAAAATGTCCTCCTGTTCATCACGGATGGCTTAAAGGGGATGGTAGGAG
CGATTAGTCGGTTCTATCCCAAAGCTCGTTTTCAACATTGTTGTGTACACGTTTCCCGTAATATCAGTCACAAAGTGCGTGTCGATGATCGTAAGGAAGT
CTGTGATGATTTTAAAATGGTGTATCAAGCCTCATCTAAAGAGGTGGCGTTGGAAGCACGTGGTGCTTTTGCGGAAAAAAGGAAAACCAGCTATCCAAAA
GTGGTTGAATCGATTCTTTCGAACGATCACTTGCTCACTTTCTATGATTTCCCCTTGGCCATACGCAAGAGTATTTATTCTACGAACTTGATTGAATCCT
TTAATAAGCAAATCAAGAAATACAGCCACCGCAAGGAACAGTTCCAAAACGAAGAGTCGATGGAACGTTTCTTAGTCTCGTCTTTTGATACTTACAACCA
AAAATTCCTAGGTCGCAGTCATAAAGGCTTTCAACAGGCCGAAGGCGAACTTGAACAAATGCTAAGCCAACTGATTGAGAATTAGAAACAATCTGCAGTA
GGGAAGAATCATTTACACAAAATTATTGACGCTCCC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAGAAAGCAGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTAGATTACGAAAAGTATGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTATGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAATGGTGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGACACGTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATTACTACACGCCCCAAACCATGTCCA
ATATAACAAAATCATTTACAGAAGAGGTAACGGCGTTTAAAGGGCGGGAGCTTCATGACCGTTATGCTGCTATTTATATGGACGCAACGTATATTCCGTT
AAAGCGGAAAACCGTCGCCAAGGAAGCTATTCATATCGCAGTTGGCATTCGCCCGGACGGATCAAAGGAAGTATTGAGCTATGCGATTGCACCGACTGAA
TCCATCACGATTTGGGAGGAAATTTTATTGGACCTTCAAGAGCGCGGTTTGAAAAATGTCCTCCTGTTCATCACGGATGGCTTAAAGGGGATGGTAGGAG
CGATTAGTCGGTTCTATCCCAAAGCTCGTTTTCAACATTGTTGTGTACACGTTTCCCGTAATATCAGTCACAAAGTGCGTGTCGATGATCGTAAGGAAGT
CTGTGATGATTTTAAAATGGTGTATCAAGCCTCATCTAAAGAGGTGGCGTTGGAAGCACGTGGTGCTTTTGCGGAAAAAAGGAAAACCAGCTATCCAAAA
GTGGTTGAATCGATTCTTTCGAACGATCACTTGCTCACTTTCTATGATTTCCCCTTGGCCATACGCAAGAGTATTTATTCTACGAACTTGATTGAATCCT
TTAATAAGCAAATCAAGAAATACAGCCACCGCAAGGAACAGTTCCAAAACGAAGAGTCGATGGAACGTTTCTTAGTCTCGTCTTTTGATACTTACAACCA
AAAATTCCTAGGTCGCAGTCATAAAGGCTTTCAACAGGCCGAAGGCGAACTTGAACAAATGCTAAGCCAACTGATTGAGAATTAGAAACAATCTGCAGTA
GGGAAGAATCATTTACACAAAATTATTGACGCTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1191 bp | 396 aa | 95 | 1285 | + | No |
Chemistry : DDE
ORF sequence :
MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNGSYDRTVKTEYGELHLQIPRDRNGEFKQQTVPAYRRTNDTL
EETVIHLFRKGITMSEIADLIEKMYGHYYTPQTMSNITKSFTEEVTAFKGRELHDRYAAIYMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEVLSYAIAP
TESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRFYPKARFQHCCVHVSRNISHKVRVDDRKEVCDDFKMVYQASSKEVALEARGAFAEKRKTSY
PKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLIEN
EETVIHLFRKGITMSEIADLIEKMYGHYYTPQTMSNITKSFTEEVTAFKGRELHDRYAAIYMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEVLSYAIAP
TESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRFYPKARFQHCCVHVSRNISHKVRVDDRKEVCDDFKMVYQASSKEVALEARGAFAEKRKTSY
PKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLIEN
Blast result :
Comments
ISLgar5 is 88% aa similar to ISEfm2.
References
1] Eraclio G., Ricci G., Fortina MG. (2014) (Paper in preparation)