ISLgar5

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AKFO01000017.1 ND Lactococus garvieae
Lactococus garvieae IPLA31405
DNA section
IS Length : 1336 bp

Ends


IR Length : 21/26

IRL : GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTA
IRR : GGGAGCGTCAATAATTTTGTGTAAATGATTCTTCCCTACTGCAGATTGTT

Insertion site


Left flankDirect repeatRight flankDR Length
AACCCAATTGTTATAATGAGAACTTTTA8

DNA sequence

GAGAGTGTAAAATATTTTGTGTAAATAGAAAAAAGGAAGTCCCTTCTGTAGAATAGAGTTACCACAACACATTCACAGAAGAGAGGACTTCCCTATGAAC
GATTTTACTACAGAAATTCTAAAGACTCTAGCGAACAAAGGCGATTTGAATGAATTATTCCGTGTCCATTTGGAGAAAGCAGTCAATACGCTTCTCAAAA
CGGAGTTAACGGCTTTCCTAGATTACGAAAAGTATGATCGCATTGGTTTTAACACGGGTAATTCTCGTAACGGCTCCTATGACCGTACGGTCAAGACCGA
GTATGGGGAACTTCATCTCCAGATTCCGCGCGACCGCAATGGTGAGTTCAAGCAACAGACTGTTCCTGCTTATAGACGGACGAATGACACGTTAGAGGAG
ACCGTCATTCACCTCTTCCGAAAAGGTATTACCATGTCGGAAATCGCAGACTTGATTGAGAAAATGTATGGGCATTACTACACGCCCCAAACCATGTCCA
ATATAACAAAATCATTTACAGAAGAGGTAACGGCGTTTAAAGGGCGGGAGCTTCATGACCGTTATGCTGCTATTTATATGGACGCAACGTATATTCCGTT
AAAGCGGAAAACCGTCGCCAAGGAAGCTATTCATATCGCAGTTGGCATTCGCCCGGACGGATCAAAGGAAGTATTGAGCTATGCGATTGCACCGACTGAA
TCCATCACGATTTGGGAGGAAATTTTATTGGACCTTCAAGAGCGCGGTTTGAAAAATGTCCTCCTGTTCATCACGGATGGCTTAAAGGGGATGGTAGGAG
CGATTAGTCGGTTCTATCCCAAAGCTCGTTTTCAACATTGTTGTGTACACGTTTCCCGTAATATCAGTCACAAAGTGCGTGTCGATGATCGTAAGGAAGT
CTGTGATGATTTTAAAATGGTGTATCAAGCCTCATCTAAAGAGGTGGCGTTGGAAGCACGTGGTGCTTTTGCGGAAAAAAGGAAAACCAGCTATCCAAAA
GTGGTTGAATCGATTCTTTCGAACGATCACTTGCTCACTTTCTATGATTTCCCCTTGGCCATACGCAAGAGTATTTATTCTACGAACTTGATTGAATCCT
TTAATAAGCAAATCAAGAAATACAGCCACCGCAAGGAACAGTTCCAAAACGAAGAGTCGATGGAACGTTTCTTAGTCTCGTCTTTTGATACTTACAACCA
AAAATTCCTAGGTCGCAGTCATAAAGGCTTTCAACAGGCCGAAGGCGAACTTGAACAAATGCTAAGCCAACTGATTGAGAATTAGAAACAATCTGCAGTA
GGGAAGAATCATTTACACAAAATTATTGACGCTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1191 bp396 aa951285+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNDFTTEILKTLANKGDLNELFRVHLEKAVNTLLKTELTAFLDYEKYDRIGFNTGNSRNGSYDRTVKTEYGELHLQIPRDRNGEFKQQTVPAYRRTNDTL
EETVIHLFRKGITMSEIADLIEKMYGHYYTPQTMSNITKSFTEEVTAFKGRELHDRYAAIYMDATYIPLKRKTVAKEAIHIAVGIRPDGSKEVLSYAIAP
TESITIWEEILLDLQERGLKNVLLFITDGLKGMVGAISRFYPKARFQHCCVHVSRNISHKVRVDDRKEVCDDFKMVYQASSKEVALEARGAFAEKRKTSY
PKVVESILSNDHLLTFYDFPLAIRKSIYSTNLIESFNKQIKKYSHRKEQFQNEESMERFLVSSFDTYNQKFLGRSHKGFQQAEGELEQMLSQLIEN

 

Blast result :
Comments
ISLgar5 is 88% aa similar to ISEfm2.
References
1] Eraclio G., Ricci G., Fortina MG. (2014) (Paper in preparation)