ISLgar4
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AMFE01000010.1 | ND | Lactococcus garvieae | Lactococcus garvieae Tac2 |
DNA section
IS Length : 809 bp
Ends
IR Length : 17/18
IRL : GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAG
IRR : GGTTCTGTTGCAAAGTCTGAAACTCAAAAACACTATCTCTGACCAACCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTTCTCACA | GATTTTTATT | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAAGATAGCAGGAGGAATGACGATGAATCATTTTAAAGGAAAGCAATT
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGCTGGGTACAAGAATACAGTAAAATCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGG
ACGAAACCTATATCAAAATTAAGGGGCGTTGGCATTATCTCTATCGAGCGATTGATGCGGACGGTTTAACCTTAGATATCTGGTTACGAAAGAAACGAGA
TACACAAGCCGCTTATGCTTTTTTAAAACGACTCCATAAACAATTTGGACATCCTAGAGTCATCGTAACAGATAAAGCTCCCTCTATTGGATCTGCCTTT
AAAAAGTTACAAAGAAACGGGTTATACACCAAAACAGAGCATCGAACCGTGAAATATCTTAACAATTTAATAGAGCAAGACCATCGACCGATTAAACGAC
GGAATAAATTTTATCGAAGTCTACGTACTGCCTCAAGCACAATTAAGGGCATGGAGACCCTTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACACT
CTTCGGCTTTTCAGTTTCTACTGAAATCAAAATATTAATGGGAATACCTGCTTAAATTGACGGTTGGTCAGAGATAGTGTTTTTGAGTTTCAGACTTTGC
AACAGAACC
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGCTGGGTACAAGAATACAGTAAAATCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGG
ACGAAACCTATATCAAAATTAAGGGGCGTTGGCATTATCTCTATCGAGCGATTGATGCGGACGGTTTAACCTTAGATATCTGGTTACGAAAGAAACGAGA
TACACAAGCCGCTTATGCTTTTTTAAAACGACTCCATAAACAATTTGGACATCCTAGAGTCATCGTAACAGATAAAGCTCCCTCTATTGGATCTGCCTTT
AAAAAGTTACAAAGAAACGGGTTATACACCAAAACAGAGCATCGAACCGTGAAATATCTTAACAATTTAATAGAGCAAGACCATCGACCGATTAAACGAC
GGAATAAATTTTATCGAAGTCTACGTACTGCCTCAAGCACAATTAAGGGCATGGAGACCCTTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACACT
CTTCGGCTTTTCAGTTTCTACTGAAATCAAAATATTAATGGGAATACCTGCTTAAATTGACGGTTGGTCAGAGATAGTGTTTTTGAGTTTCAGACTTTGC
AACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 75 | 755 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYSKILYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGHPRVIVTDKAPSIGSAFKKLQRNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASSTIKGMETLRGIY
KKNRRNGTLFGFSVSTEIKILMGIPA
DIWLRKKRDTQAAYAFLKRLHKQFGHPRVIVTDKAPSIGSAFKKLQRNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASSTIKGMETLRGIY
KKNRRNGTLFGFSVSTEIKILMGIPA
Blast result :
Comments
ISLgar4 is 98% aa similar to IS946V.
References
1] Eraclio G., Ricci G., Fortina MG. (2014) (Paper in preparation)