ISLgar4

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AMFE01000010.1 ND Lactococcus garvieae
Lactococcus garvieae Tac2
DNA section
IS Length : 809 bp

Ends


IR Length : 17/18

IRL : GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAG
IRR : GGTTCTGTTGCAAAGTCTGAAACTCAAAAACACTATCTCTGACCAACCGT

Insertion site


Left flankDirect repeatRight flankDR Length
GTTTCTCACAGATTTTTATT0

DNA sequence

GGTTCTGTTGCAAAGTTTTAAATCTACTATCAAATAAGGTAGAATAATAGAAAAAGATAGCAGGAGGAATGACGATGAATCATTTTAAAGGAAAGCAATT
TCAGCAGGATGTGATTATTGTAGCCGTGGGCTACTATCTTCGTTATAACCTTAGCTATCGTGAAGTTCAAGAAATCTTATATGATCGTGGCATTAACGTT
TCTCATACGACGATTTATCGCTGGGTACAAGAATACAGTAAAATCCTCTATCATCTCTGGAAAAAGAAAAATAGACAGTCCTTCTATTCGTGGAAAATGG
ACGAAACCTATATCAAAATTAAGGGGCGTTGGCATTATCTCTATCGAGCGATTGATGCGGACGGTTTAACCTTAGATATCTGGTTACGAAAGAAACGAGA
TACACAAGCCGCTTATGCTTTTTTAAAACGACTCCATAAACAATTTGGACATCCTAGAGTCATCGTAACAGATAAAGCTCCCTCTATTGGATCTGCCTTT
AAAAAGTTACAAAGAAACGGGTTATACACCAAAACAGAGCATCGAACCGTGAAATATCTTAACAATTTAATAGAGCAAGACCATCGACCGATTAAACGAC
GGAATAAATTTTATCGAAGTCTACGTACTGCCTCAAGCACAATTAAGGGCATGGAGACCCTTCGAGGAATATACAAAAAGAACCGAAGAAATGGAACACT
CTTCGGCTTTTCAGTTTCTACTGAAATCAAAATATTAATGGGAATACCTGCTTAAATTGACGGTTGGTCAGAGATAGTGTTTTTGAGTTTCAGACTTTGC
AACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa75755+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHFKGKQFQQDVIIVAVGYYLRYNLSYREVQEILYDRGINVSHTTIYRWVQEYSKILYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTL
DIWLRKKRDTQAAYAFLKRLHKQFGHPRVIVTDKAPSIGSAFKKLQRNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASSTIKGMETLRGIY
KKNRRNGTLFGFSVSTEIKILMGIPA

 

Blast result :
Comments
ISLgar4 is 98% aa similar to IS946V.
References
1] Eraclio G., Ricci G., Fortina MG. (2014) (Paper in preparation)