ISTeha2

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP012046 ND Tetragenococcus halophilus
Tetragenococcus halophilus NBRC 12172
DNA section
IS Length : 809 bp

Ends


IR Length : 17

IRL : GGTTCTGTTGCAAAGTTCCCCATAACACCTGATTTATTGTAAAATGTAAT
IRR : GGTTCTGTTGCAAAGTTTCAATACTGAGTACAAAAGTCCCATTCTGATAC

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGAAGAAAGTATATCCAA0

DNA sequence

GGTTCTGTTGCAAAGTTCCCCATAACACCTGATTTATTGTAAAATGTAATAAAAAAGAATGCGAGGACAACAGATGAATCATTTTAAGGGCAAACAATTC
CAAAAAGACGTGATTATTATCTCTGTTGGGTATTATCTTCGCTATAATTTGAGTTATCGTGATGTTCAAGAGATGTTATATGATCGTGGCATTAACGTTT
CTCACACAACAATTTACCGTTGGGTTCAAGAATATGGTAAGCTGATCTATCAAATCTGGAAAAAGAAAAATAGACAGTCCTTTTATTCGTGGAAAATGGA
CGAAACTTATATTAAAATTAAAGGGAAGTGGCATTATCTCTATCGTGCAATCGACTCAGAAGGCATGACACTGGATATTTGGCTAAGACGAAAGAGAAAT
ACTCAGTCTGCTTATGCTTTCTTTAAACGACTATACAAGCAGTTTGGGGAACCGAAAGTTATCGTGACAGATAAAGCACCATCAATTGCTAGTGCTTTTA
GGAAGTTACAAAAGCAGGGGCTATACAGCGAAACTGAGCACCGGACAGTCAAGTATCTCAATAACTTAATTGAGCAAGATCATAGACCTGTTAAACGTCG
AAGTAAACTTTATCAAAGTCTTCGTACTGCATCAACTACGATTAAGGGCATAGAAGCATTGAGAGGCATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTATCTACTGAAATTAAAGTTTTGATGGGTATACCAGCATAGTCAAAGTATCAGAATGGGACTTTTGTACTCAGTATTGAAACTTTGC
AACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
681 bp226 aa74754+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNHFKGKQFQKDVIIISVGYYLRYNLSYRDVQEMLYDRGINVSHTTIYRWVQEYGKLIYQIWKKKNRQSFYSWKMDETYIKIKGKWHYLYRAIDSEGMTL
DIWLRRKRNTQSAYAFFKRLYKQFGEPKVIVTDKAPSIASAFRKLQKQGLYSETEHRTVKYLNNLIEQDHRPVKRRSKLYQSLRTASTTIKGIEALRGIY
KKNRRNGTLFGFSVSTEIKVLMGIPA

 

Blast result :
Comments
ISTeha2 is 95% aa similar to ISS1RS.
References
1] ISfinder submission (2014)
2] Nakazawa,H., Omata,S., Koga,C., Watanabe,Y., Katano,Y., Ito,N., Tsukatani,N., Ankai,A., Oguchi,A., Fukui,S., Yashiro,I., Kamata,S., Hashimoto,Y., Yamazaki,J., Taguchi,H., Tanaka,A., Koyama,T., Ichige,A., Hanya,Y., Tanikawa,S., Yamazaki,S. and Fujita,N. (2011) Direct submission GenBank.