ISTeha2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP012046 | ND | Tetragenococcus halophilus | Tetragenococcus halophilus NBRC 12172 |
DNA section
IS Length : 809 bp
Ends
IR Length : 17
IRL : GGTTCTGTTGCAAAGTTCCCCATAACACCTGATTTATTGTAAAATGTAAT
IRR : GGTTCTGTTGCAAAGTTTCAATACTGAGTACAAAAGTCCCATTCTGATAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAGAAGAAA | GTATATCCAA | 0 |
DNA sequence
GGTTCTGTTGCAAAGTTCCCCATAACACCTGATTTATTGTAAAATGTAATAAAAAAGAATGCGAGGACAACAGATGAATCATTTTAAGGGCAAACAATTC
CAAAAAGACGTGATTATTATCTCTGTTGGGTATTATCTTCGCTATAATTTGAGTTATCGTGATGTTCAAGAGATGTTATATGATCGTGGCATTAACGTTT
CTCACACAACAATTTACCGTTGGGTTCAAGAATATGGTAAGCTGATCTATCAAATCTGGAAAAAGAAAAATAGACAGTCCTTTTATTCGTGGAAAATGGA
CGAAACTTATATTAAAATTAAAGGGAAGTGGCATTATCTCTATCGTGCAATCGACTCAGAAGGCATGACACTGGATATTTGGCTAAGACGAAAGAGAAAT
ACTCAGTCTGCTTATGCTTTCTTTAAACGACTATACAAGCAGTTTGGGGAACCGAAAGTTATCGTGACAGATAAAGCACCATCAATTGCTAGTGCTTTTA
GGAAGTTACAAAAGCAGGGGCTATACAGCGAAACTGAGCACCGGACAGTCAAGTATCTCAATAACTTAATTGAGCAAGATCATAGACCTGTTAAACGTCG
AAGTAAACTTTATCAAAGTCTTCGTACTGCATCAACTACGATTAAGGGCATAGAAGCATTGAGAGGCATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTATCTACTGAAATTAAAGTTTTGATGGGTATACCAGCATAGTCAAAGTATCAGAATGGGACTTTTGTACTCAGTATTGAAACTTTGC
AACAGAACC
CAAAAAGACGTGATTATTATCTCTGTTGGGTATTATCTTCGCTATAATTTGAGTTATCGTGATGTTCAAGAGATGTTATATGATCGTGGCATTAACGTTT
CTCACACAACAATTTACCGTTGGGTTCAAGAATATGGTAAGCTGATCTATCAAATCTGGAAAAAGAAAAATAGACAGTCCTTTTATTCGTGGAAAATGGA
CGAAACTTATATTAAAATTAAAGGGAAGTGGCATTATCTCTATCGTGCAATCGACTCAGAAGGCATGACACTGGATATTTGGCTAAGACGAAAGAGAAAT
ACTCAGTCTGCTTATGCTTTCTTTAAACGACTATACAAGCAGTTTGGGGAACCGAAAGTTATCGTGACAGATAAAGCACCATCAATTGCTAGTGCTTTTA
GGAAGTTACAAAAGCAGGGGCTATACAGCGAAACTGAGCACCGGACAGTCAAGTATCTCAATAACTTAATTGAGCAAGATCATAGACCTGTTAAACGTCG
AAGTAAACTTTATCAAAGTCTTCGTACTGCATCAACTACGATTAAGGGCATAGAAGCATTGAGAGGCATATACAAAAAGAACCGAAGAAATGGAACGCTC
TTCGGCTTTTCGGTATCTACTGAAATTAAAGTTTTGATGGGTATACCAGCATAGTCAAAGTATCAGAATGGGACTTTTGTACTCAGTATTGAAACTTTGC
AACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
681 bp | 226 aa | 74 | 754 | + | No |
Chemistry : DDE
ORF sequence :
MNHFKGKQFQKDVIIISVGYYLRYNLSYRDVQEMLYDRGINVSHTTIYRWVQEYGKLIYQIWKKKNRQSFYSWKMDETYIKIKGKWHYLYRAIDSEGMTL
DIWLRRKRNTQSAYAFFKRLYKQFGEPKVIVTDKAPSIASAFRKLQKQGLYSETEHRTVKYLNNLIEQDHRPVKRRSKLYQSLRTASTTIKGIEALRGIY
KKNRRNGTLFGFSVSTEIKVLMGIPA
DIWLRRKRNTQSAYAFFKRLYKQFGEPKVIVTDKAPSIASAFRKLQKQGLYSETEHRTVKYLNNLIEQDHRPVKRRSKLYQSLRTASTTIKGIEALRGIY
KKNRRNGTLFGFSVSTEIKVLMGIPA
Blast result :
Comments
ISTeha2 is 95% aa similar to ISS1RS.
References
1] ISfinder submission (2014)
2] Nakazawa,H., Omata,S., Koga,C., Watanabe,Y., Katano,Y., Ito,N., Tsukatani,N., Ankai,A., Oguchi,A., Fukui,S., Yashiro,I., Kamata,S., Hashimoto,Y., Yamazaki,J., Taguchi,H., Tanaka,A., Koyama,T., Ichige,A., Hanya,Y., Tanikawa,S., Yamazaki,S. and Fujita,N. (2011) Direct submission GenBank.
2] Nakazawa,H., Omata,S., Koga,C., Watanabe,Y., Katano,Y., Ito,N., Tsukatani,N., Ankai,A., Oguchi,A., Fukui,S., Yashiro,I., Kamata,S., Hashimoto,Y., Yamazaki,J., Taguchi,H., Tanaka,A., Koyama,T., Ichige,A., Hanya,Y., Tanikawa,S., Yamazaki,S. and Fujita,N. (2011) Direct submission GenBank.