ISHbo6
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001690 | ND | Halogeometricum borinquense | Halogeometricum borinquense 11551p pHBOR02 Halogeometricum borinquense DSM11551 |
DNA section
IS Length : 1456 bp
Ends
Left end : AAAGAGCAAGGAGAATACCCGGGCCTTTAGGCGCGGGATGAATCCGACACTCTGACCGCCAATCCACCGACTACACTCCAACCGGATATTCAACGTCCGG II struct. : Yes
Right end : CGCGAGAGCGGGTCGTTCAACACGAGAGAACAGGGAGCCTGCAAACCGTAATATCCCAACGCTCGGGATTCCTCCGGCTTCAGTCGGAGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGAAACGATAAC | TTAT | TGGTCGATGACT | tcaa |
CCGGCTGTCAGC | TTAT | TTGCGGACGTTC | TCAA |
TTAGCCAGTTGA | TTAT | TTAAGCGATGCC | TCAA |
ATCCAGCAGACG | TTAT | CTGACGTGACTG | TCAA |
TCTATGACCCGT | TTAT | TACTGATGACTA | tcaa |
DNA sequence
AAAGAGCAAGGAGAATACCCGGGCCTTTAGGCGCGGGATGAATCCGACACTCTGACCGCCAATCCACCGACTACACTCCAACCGGATATTCAACGTCCGG
TCGTTGGTTTTAATACCTGTTCTCACATAACATGTTATGAAGACAGTTCGATGCTGGAAACCACCCGCACCTACGTCGCACGCATTACGAACCACCAGCA
GGTTCGTGACGACCTCGACCAGTGCGGGTTCTCCGCATCCAAACTGTGGAACGTCGGTCGCTACTACATCCAACAACGGTGGGACGACGACGGTGAGATA
CCCGACGAAGCCGAACTCAAATCGGAGTTGAAAGACCACAAACGCTACAGTGACCTTCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAACTTGCTGAGG
CGTTCACTGGCTGGTACAACTCCGACGACGGCAACAACCCACCGGGCTACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTCACGTGGAAGAAACG
GGCCATCAAGCACGACGACAAGCACGGTCAACTCCGTCTCTCGAAAGGGTTTAACCTGAAAGAGAGTCGGTCTGACTTCATCCTCGCGGAGTACGAAACT
CGCCCCGACGTAGAAGTTGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTCCACCTCGTCTGCAAGACGGAGATTCCAGTCG
AAGACGCACCCGGAAACAACACGGCGGGTATCGACCTCGGTATCAGCAACTACCTCGCCATCGACTACGAAGATGGCGAGAGCGAACTATATCCGGGGAA
CGTGCTGAAAGAGGACAAACACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGCCCGTCGAAGCGAGCGCGGAAGGCTCGACAGAAACTC
TCCCGACGCAAAGACCACTTCCTTCACACCCTCAGCAAACACATCGTTGAGCGGTGTGTGGAAGAAGGCGTGGAGAAGATAGCGGTTGGCGACCTCAGTG
ACATCCGCGAGAATGAAAACGGTGACTCGCGGAACTGGGGTGCGTCGGAAAACAAGAAGTTGCACGGCTGGGAGTTCGACCGATTCGCCCGTCTCCTTGA
ATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGTGTGGACGAGGAGAACACCTCGAAGACGTGTTCGTGTTGCGGGAAGATTCGGGATAGCAACCGC
GTGGAGCGAGGGCTGTACGTCTGTTCGTCGTGCGAGACGACGATGAACGCAGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCCC
CAACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGGTCGTTCAACACGAGAGAACAGGGAGCCTGCAA
ACCGTAATATCCCAACGCTCGGGATTCCTCCGGCTTCAGTCGGAGGAGGATGTCAA
TCGTTGGTTTTAATACCTGTTCTCACATAACATGTTATGAAGACAGTTCGATGCTGGAAACCACCCGCACCTACGTCGCACGCATTACGAACCACCAGCA
GGTTCGTGACGACCTCGACCAGTGCGGGTTCTCCGCATCCAAACTGTGGAACGTCGGTCGCTACTACATCCAACAACGGTGGGACGACGACGGTGAGATA
CCCGACGAAGCCGAACTCAAATCGGAGTTGAAAGACCACAAACGCTACAGTGACCTTCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAACTTGCTGAGG
CGTTCACTGGCTGGTACAACTCCGACGACGGCAACAACCCACCGGGCTACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTCACGTGGAAGAAACG
GGCCATCAAGCACGACGACAAGCACGGTCAACTCCGTCTCTCGAAAGGGTTTAACCTGAAAGAGAGTCGGTCTGACTTCATCCTCGCGGAGTACGAAACT
CGCCCCGACGTAGAAGTTGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTCCACCTCGTCTGCAAGACGGAGATTCCAGTCG
AAGACGCACCCGGAAACAACACGGCGGGTATCGACCTCGGTATCAGCAACTACCTCGCCATCGACTACGAAGATGGCGAGAGCGAACTATATCCGGGGAA
CGTGCTGAAAGAGGACAAACACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGCCCGTCGAAGCGAGCGCGGAAGGCTCGACAGAAACTC
TCCCGACGCAAAGACCACTTCCTTCACACCCTCAGCAAACACATCGTTGAGCGGTGTGTGGAAGAAGGCGTGGAGAAGATAGCGGTTGGCGACCTCAGTG
ACATCCGCGAGAATGAAAACGGTGACTCGCGGAACTGGGGTGCGTCGGAAAACAAGAAGTTGCACGGCTGGGAGTTCGACCGATTCGCCCGTCTCCTTGA
ATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGTGTGGACGAGGAGAACACCTCGAAGACGTGTTCGTGTTGCGGGAAGATTCGGGATAGCAACCGC
GTGGAGCGAGGGCTGTACGTCTGTTCGTCGTGCGAGACGACGATGAACGCAGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCCC
CAACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGGTCGTTCAACACGAGAGAACAGGGAGCCTGCAA
ACCGTAATATCCCAACGCTCGGGATTCCTCCGGCTTCAGTCGGAGGAGGATGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 151 | 1407 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYVARITNHQQVRDDLDQCGFSASKLWNVGRYYIQQRWDDDGEIPDEAELKSELKDHKRYSDLHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDDHPRSTVTWKKRAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKTEIPVEDAPGNNTAGIDLGISN
YLAIDYEDGESELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARQKLSRRKDHFLHTLSKHIVERCVEEGVEKIAVGDLSDIRENENGDSRNWGASE
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGKIRDSNRVERGLYVCSSCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGSFNTREQGACKP
RKRGDDHPRSTVTWKKRAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKTEIPVEDAPGNNTAGIDLGISN
YLAIDYEDGESELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARQKLSRRKDHFLHTLSKHIVERCVEEGVEKIAVGDLSDIRENENGDSRNWGASE
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGKIRDSNRVERGLYVCSSCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGSFNTREQGACKP
Blast result :
Comments
ISHbo6 is 95% aa (TnpB) similar to ISHmu7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159