ISHbo6

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001690 ND Halogeometricum borinquense
Halogeometricum borinquense 11551p pHBOR02
Halogeometricum borinquense DSM11551
DNA section
IS Length : 1456 bp

Ends


Left end : AAAGAGCAAGGAGAATACCCGGGCCTTTAGGCGCGGGATGAATCCGACACTCTGACCGCCAATCCACCGACTACACTCCAACCGGATATTCAACGTCCGG II struct. : Yes
Right end : CGCGAGAGCGGGTCGTTCAACACGAGAGAACAGGGAGCCTGCAAACCGTAATATCCCAACGCTCGGGATTCCTCCGGCTTCAGTCGGAGGAGGATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TGAAACGATAACTTATTGGTCGATGACTtcaa
CCGGCTGTCAGCTTATTTGCGGACGTTCTCAA
TTAGCCAGTTGATTATTTAAGCGATGCCTCAA
ATCCAGCAGACGTTATCTGACGTGACTGTCAA
TCTATGACCCGTTTATTACTGATGACTAtcaa

DNA sequence

AAAGAGCAAGGAGAATACCCGGGCCTTTAGGCGCGGGATGAATCCGACACTCTGACCGCCAATCCACCGACTACACTCCAACCGGATATTCAACGTCCGG
TCGTTGGTTTTAATACCTGTTCTCACATAACATGTTATGAAGACAGTTCGATGCTGGAAACCACCCGCACCTACGTCGCACGCATTACGAACCACCAGCA
GGTTCGTGACGACCTCGACCAGTGCGGGTTCTCCGCATCCAAACTGTGGAACGTCGGTCGCTACTACATCCAACAACGGTGGGACGACGACGGTGAGATA
CCCGACGAAGCCGAACTCAAATCGGAGTTGAAAGACCACAAACGCTACAGTGACCTTCATTCTCAGTCAAGTCAGCGAGTTCTCGAAGAACTTGCTGAGG
CGTTCACTGGCTGGTACAACTCCGACGACGGCAACAACCCACCGGGCTACCGGAAACGTGGCGACGACCACCCGCGCTCCACCGTCACGTGGAAGAAACG
GGCCATCAAGCACGACGACAAGCACGGTCAACTCCGTCTCTCGAAAGGGTTTAACCTGAAAGAGAGTCGGTCTGACTTCATCCTCGCGGAGTACGAAACT
CGCCCCGACGTAGAAGTTGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGCGACGAGTGGGAACTCCACCTCGTCTGCAAGACGGAGATTCCAGTCG
AAGACGCACCCGGAAACAACACGGCGGGTATCGACCTCGGTATCAGCAACTACCTCGCCATCGACTACGAAGATGGCGAGAGCGAACTATATCCGGGGAA
CGTGCTGAAAGAGGACAAACACTACTTCACCCGCGAGGAGTACCAGACCGAAGGCGAGAACGGCCCGTCGAAGCGAGCGCGGAAGGCTCGACAGAAACTC
TCCCGACGCAAAGACCACTTCCTTCACACCCTCAGCAAACACATCGTTGAGCGGTGTGTGGAAGAAGGCGTGGAGAAGATAGCGGTTGGCGACCTCAGTG
ACATCCGCGAGAATGAAAACGGTGACTCGCGGAACTGGGGTGCGTCGGAAAACAAGAAGTTGCACGGCTGGGAGTTCGACCGATTCGCCCGTCTCCTTGA
ATACAAGGCCGAGGAACACGGCATCCTCGTTGACCGTGTGGACGAGGAGAACACCTCGAAGACGTGTTCGTGTTGCGGGAAGATTCGGGATAGCAACCGC
GTGGAGCGAGGGCTGTACGTCTGTTCGTCGTGCGAGACGACGATGAACGCAGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCCC
CAACAGGGGATATGAGTAACGGCTGGTTGGCACAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGGTCGTTCAACACGAGAGAACAGGGAGCCTGCAA
ACCGTAATATCCCAACGCTCGGGATTCCTCCGGCTTCAGTCGGAGGAGGATGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1511407+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYVARITNHQQVRDDLDQCGFSASKLWNVGRYYIQQRWDDDGEIPDEAELKSELKDHKRYSDLHSQSSQRVLEELAEAFTGWYNSDDGNNPPGY
RKRGDDHPRSTVTWKKRAIKHDDKHGQLRLSKGFNLKESRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKTEIPVEDAPGNNTAGIDLGISN
YLAIDYEDGESELYPGNVLKEDKHYFTREEYQTEGENGPSKRARKARQKLSRRKDHFLHTLSKHIVERCVEEGVEKIAVGDLSDIRENENGDSRNWGASE
NKKLHGWEFDRFARLLEYKAEEHGILVDRVDEENTSKTCSCCGKIRDSNRVERGLYVCSSCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGSFNTREQGACKP

 

Blast result :
Comments
ISHbo6 is 95% aa (TnpB) similar to ISHmu7.
References
1] Pfeiffer, F. (2013) Direct submission
2] Malfatti,S., Tindall,B.J., Schneider,S., Fahnrich,R., Lapidus,A., Labuttii,K., Copeland,A., Glavina Del Rio,T., Nolan,M., Chen,F., Lucas,S., Tice,H., Cheng,J.F., Bruce,D., Goodwin,L., Pitluck,S., Anderson,I., Pati,A., Ivanova,N., Mavromatis,K., Chen,A., Palaniappan,K., D'haeseleer,P., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Kyrpides,N.C., Klenk,H.P. and Chain,P. (2009) Stand Genomic Sci 1 (2), 150-159