ISLgar3

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AMQS01000049.1 ND Lactococcus garvieae
Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7
Lactococcus garvieae DCC43
DNA section
IS Length : 994 bp

Ends


IR Length : 16/17

IRL : ACCCAACTTGCTAGTTGAAATTTTTGATAAATAAAAAACATCTCCCAATA
IRR : ACCTAACTTGCTAGTTGTTTAATCCCTAATGAAAATTTCAAAGTCATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
AGCTCCATATATTAATATATATATAT6

DNA sequence

ACCCAACTTGCTAGTTGAAATTTTTGATAAATAAAAAACATCTCCCAATACGATAAACTTAAGTGACTCAATACTTTAAGTTAGGAATCGTTCAAGAGAT
GCAAAATAATTTTATCACACCTTTCAATGAATTACTCAAACGAGTGAGTGACCTTTATAAAACTTTCGCCCCGAATGAAGTTAAAAATCGGAAAAATATT
CATCTTGCCAAACAGTCTGATGAAGTCATTTTAGCCTGTTATTTGTTTGGATTACTTCACTCTTGTTCAACCCTCATTGGGATTTATCGTCTGTCCAGTT
CAATGTTTGGGGATGATTTTCCCAGCGAAACTCGATTTTACAGGACTATAAATAACTTAAAACCAACGATTGAACTGATGAATCAAGGGCTTCTCAAAGA
TAATGTCTCAGAGGAAGAAAAACTAGGAATTATAGATAGCTTACCAATCCCTCTTTGTCAACCGATCCGAAATTTTAGAGCCCATGGAGCGAGTGAAATC
GCAGATATAGGTTACAATGCGACTAAAAAGATCTGGTTTTATGGCTTGAAATTCCATGCAATTGTTAACCCTTCAGGACTTATTCTGAATTTTGTTCTGA
GTTCTGCTAGTTTTCATGATGCTAAAGTTTGCGAAGATTGCCTCACAGATTTTCACCTCCCAATTCTCATTGGAGATGCAGGCTATGTGGGACAAGCACT
CGCAGGACGGTGTGCCGAGAAAGGAACAGCACTTTTGGCAACTCCTCGAAGTAATATGAGTAAAACTGGAATAGACTATCGTTCTGTTAAAGCAATTCGT
AAAAGCGTCGAAACCGTCTTTTCATCACTTCAAGGTTTTGGAATTGAGCAATTGACCGCACACCAGTCTTACCAGATTATGACAAGAGTGCAACTTCTAA
TCTTACTTTACAATCTATTAGAGGTTGAAGCTCATAAAATTAAACCAATGACTTTGAAATTTTCATTAGGGATTAAACAACTAGCAAGTTAGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa99992+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQNNFITPFNELLKRVSDLYKTFAPNEVKNRKNIHLAKQSDEVILACYLFGLLHSCSTLIGIYRLSSSMFGDDFPSETRFYRTINNLKPTIELMNQGLLK
DNVSEEEKLGIIDSLPIPLCQPIRNFRAHGASEIADIGYNATKKIWFYGLKFHAIVNPSGLILNFVLSSASFHDAKVCEDCLTDFHLPILIGDAGYVGQA
LAGRCAEKGTALLATPRSNMSKTGIDYRSVKAIRKSVETVFSSLQGFGIEQLTAHQSYQIMTRVQLLILLYNLLEVEAHKIKPMTLKFSLGIKQLAS

 

Blast result :
Comments
ISLgar3 is 61% aa similar to ISLgar2.
References
1] Eraclio, G., Ricci, G., Fortina, MG. Direct submission.(Paper in preparation)