ISLgar3
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AMQS01000049.1 | ND | Lactococcus garvieae | Lactococcus lactis subsp. cremoris UC509.9 plasmid pCIS7 Lactococcus garvieae DCC43 |
DNA section
IS Length : 994 bp
Ends
IR Length : 16/17
IRL : ACCCAACTTGCTAGTTGAAATTTTTGATAAATAAAAAACATCTCCCAATA
IRR : ACCTAACTTGCTAGTTGTTTAATCCCTAATGAAAATTTCAAAGTCATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCTCCATAT | ATTAAT | ATATATATAT | 6 |
DNA sequence
ACCCAACTTGCTAGTTGAAATTTTTGATAAATAAAAAACATCTCCCAATACGATAAACTTAAGTGACTCAATACTTTAAGTTAGGAATCGTTCAAGAGAT
GCAAAATAATTTTATCACACCTTTCAATGAATTACTCAAACGAGTGAGTGACCTTTATAAAACTTTCGCCCCGAATGAAGTTAAAAATCGGAAAAATATT
CATCTTGCCAAACAGTCTGATGAAGTCATTTTAGCCTGTTATTTGTTTGGATTACTTCACTCTTGTTCAACCCTCATTGGGATTTATCGTCTGTCCAGTT
CAATGTTTGGGGATGATTTTCCCAGCGAAACTCGATTTTACAGGACTATAAATAACTTAAAACCAACGATTGAACTGATGAATCAAGGGCTTCTCAAAGA
TAATGTCTCAGAGGAAGAAAAACTAGGAATTATAGATAGCTTACCAATCCCTCTTTGTCAACCGATCCGAAATTTTAGAGCCCATGGAGCGAGTGAAATC
GCAGATATAGGTTACAATGCGACTAAAAAGATCTGGTTTTATGGCTTGAAATTCCATGCAATTGTTAACCCTTCAGGACTTATTCTGAATTTTGTTCTGA
GTTCTGCTAGTTTTCATGATGCTAAAGTTTGCGAAGATTGCCTCACAGATTTTCACCTCCCAATTCTCATTGGAGATGCAGGCTATGTGGGACAAGCACT
CGCAGGACGGTGTGCCGAGAAAGGAACAGCACTTTTGGCAACTCCTCGAAGTAATATGAGTAAAACTGGAATAGACTATCGTTCTGTTAAAGCAATTCGT
AAAAGCGTCGAAACCGTCTTTTCATCACTTCAAGGTTTTGGAATTGAGCAATTGACCGCACACCAGTCTTACCAGATTATGACAAGAGTGCAACTTCTAA
TCTTACTTTACAATCTATTAGAGGTTGAAGCTCATAAAATTAAACCAATGACTTTGAAATTTTCATTAGGGATTAAACAACTAGCAAGTTAGGT
GCAAAATAATTTTATCACACCTTTCAATGAATTACTCAAACGAGTGAGTGACCTTTATAAAACTTTCGCCCCGAATGAAGTTAAAAATCGGAAAAATATT
CATCTTGCCAAACAGTCTGATGAAGTCATTTTAGCCTGTTATTTGTTTGGATTACTTCACTCTTGTTCAACCCTCATTGGGATTTATCGTCTGTCCAGTT
CAATGTTTGGGGATGATTTTCCCAGCGAAACTCGATTTTACAGGACTATAAATAACTTAAAACCAACGATTGAACTGATGAATCAAGGGCTTCTCAAAGA
TAATGTCTCAGAGGAAGAAAAACTAGGAATTATAGATAGCTTACCAATCCCTCTTTGTCAACCGATCCGAAATTTTAGAGCCCATGGAGCGAGTGAAATC
GCAGATATAGGTTACAATGCGACTAAAAAGATCTGGTTTTATGGCTTGAAATTCCATGCAATTGTTAACCCTTCAGGACTTATTCTGAATTTTGTTCTGA
GTTCTGCTAGTTTTCATGATGCTAAAGTTTGCGAAGATTGCCTCACAGATTTTCACCTCCCAATTCTCATTGGAGATGCAGGCTATGTGGGACAAGCACT
CGCAGGACGGTGTGCCGAGAAAGGAACAGCACTTTTGGCAACTCCTCGAAGTAATATGAGTAAAACTGGAATAGACTATCGTTCTGTTAAAGCAATTCGT
AAAAGCGTCGAAACCGTCTTTTCATCACTTCAAGGTTTTGGAATTGAGCAATTGACCGCACACCAGTCTTACCAGATTATGACAAGAGTGCAACTTCTAA
TCTTACTTTACAATCTATTAGAGGTTGAAGCTCATAAAATTAAACCAATGACTTTGAAATTTTCATTAGGGATTAAACAACTAGCAAGTTAGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 99 | 992 | + | No |
Chemistry : DDE
ORF sequence :
MQNNFITPFNELLKRVSDLYKTFAPNEVKNRKNIHLAKQSDEVILACYLFGLLHSCSTLIGIYRLSSSMFGDDFPSETRFYRTINNLKPTIELMNQGLLK
DNVSEEEKLGIIDSLPIPLCQPIRNFRAHGASEIADIGYNATKKIWFYGLKFHAIVNPSGLILNFVLSSASFHDAKVCEDCLTDFHLPILIGDAGYVGQA
LAGRCAEKGTALLATPRSNMSKTGIDYRSVKAIRKSVETVFSSLQGFGIEQLTAHQSYQIMTRVQLLILLYNLLEVEAHKIKPMTLKFSLGIKQLAS
DNVSEEEKLGIIDSLPIPLCQPIRNFRAHGASEIADIGYNATKKIWFYGLKFHAIVNPSGLILNFVLSSASFHDAKVCEDCLTDFHLPILIGDAGYVGQA
LAGRCAEKGTALLATPRSNMSKTGIDYRSVKAIRKSVETVFSSLQGFGIEQLTAHQSYQIMTRVQLLILLYNLLEVEAHKIKPMTLKFSLGIKQLAS
Blast result :
Comments
ISLgar3 is 61% aa similar to ISLgar2.
References
1] Eraclio, G., Ricci, G., Fortina, MG. Direct submission.(Paper in preparation)