ISCca8

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Candidatus Cardinium
Candidatus Cardinium hertigii BtQ-VLC
Cardinium endosymbiont cBtQ1 of Bemisia tabaci plasmid pCHV
DNA section
IS Length : 836 bp

Ends


IR Length : 15

IRL : GGTTCTGTCGCATCTGTGTAAAAAAAGGATTAAATTTAGGTTTTAGTTTA
IRR : GGCTCTGTCGCATCTATATTTAATTTTTCTTAGCTTTCCTCCTTGTCTTC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAAAATCGTCAAAAATGC0

DNA sequence

GGTTCTGTCGCATCTGTGTAAAAAAAGGATTAAATTTAGGTTTTAGTTTAAAACTTTAGTTTCTATGTTTACTATTACGCGCGGATTACTGCCATATTTT
AAAGGATTTTGTTCTTCACCTGAGTTAATCTTGCTATTTGTGTACATGAAATGTCGATTTTCTTTAAGCTATAGAGATCTGGAAGAGATGATGCATATTA
GATGCGCAAAGATTGATCGCTCTACTTTACAAAGATGGGTTATTAAGTTTGTTCCGCTCATAGATAAAGAAGTAAGAAAAAAGAAAAACGCTAAGTTAGT
AGTAGTTGGAGAATGGATGAAAACTTATGTAAAGTTAAATGGTAAGTGGATCTATTTATATAGAGCAGTAGATCGTTATGGAGATACGGTTGACTTTTTT
CTAAGTGAACGTAGAGACAATTCTTCAGCTATTTCTTTTTTTAGTAAGGTTATCACCGATAATAATATTCCATATAAAATAGTAGTTGATAAAAGTGGTA
GTAATAAGGGTGCTCTTGATGCTTTAAACACAGAATTAGATCAAGAGCATAAGATTCAAATATTTCAAAATAAATACTTGAATAATAGAGTCGAACAAGA
TCATAGGTTTATCAAAAAACGGATAAAACCCATGCTAGGGTTTAAGAGTTTCCATTCTGCTGTTATTACTATAAAAAGGATAGAAAACATTAGAATAATT
CAAAAGGGACAAATAATCGGATCTAAAAAACAGGTATCTACTTTTGATAACTTTTCTAAACTTATGGCCGCATAATATCCAAAATTGAAGACAAGGAGGA
AAGCTAAGAAAAATTAAATATAGATGCGACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
711 bp236 aa65775+No
ORF function : Transposase
Description :

ORF sequence :

MFTITRGLLPYFKGFCSSPELILLFVYMKCRFSLSYRDLEEMMHIRCAKIDRSTLQRWVIKFVPLIDKEVRKKKNAKLVVVGEWMKTYVKLNGKWIYLYR
AVDRYGDTVDFFLSERRDNSSAISFFSKVITDNNIPYKIVVDKSGSNKGALDALNTELDQEHKIQIFQNKYLNNRVEQDHRFIKKRIKPMLGFKSFHSAV
ITIKRIENIRIIQKGQIIGSKKQVSTFDNFSKLMAA

 

Blast result :
Comments
ISCca8 is 88% aa similar to ISCca2.
References
1] Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. (2014) Genome Biol Evol. Apr 10

2] Santos-Garcia D. (2012) Direct submission