ISLla3
- Family IS3
- Group IS150
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003132 | ND | Lactococcus lactis | Enterococcus faecalis 62 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris A76 Lactococcus lactis subsp. cremoris A76 pQA554 Lactococcus lactis subsp. cremoris UC5099 Lactococcus lactis subsp. lactis IL1403 Lactococcus lactis subsp. lactis pK214 Lactococcus garvieae TB25 |
DNA section
IS Length : 1484 bp
Ends
IR Length : 23/30
IRL : TGTAGTGACCCCCAAAATATAGACTTTTCAAATCTATATTTCGGAGGTCT
IRR : TGATGTGCACCCCAAAAGTTAGACTTTTTATCCAAGTAGAAATACTTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAACCGTGA | ATT | TCGTTCACTT | 3 |
AAAAACCGCT | TTT | GGCGGTTTTT | 3 |
AAGCCTCTAA | ATT | AGAGGCTTTT | 3 |
AAAAACCGTT | ACT | CACGGCTTTC | 3 |
ACCTGAGTAA | ATTTGCTGGC | 0 | |
AAAAACCGCC | AAA | AGCGGTTTTT | 3 |
TGGAACCTTT | TTG | AGCGGCTACT | 3 |
GCTTTTTTGA | GTT | GACGGTTCTT | 3 |
DNA sequence
TGTAGTGACCCCCAAAATATAGACTTTTCAAATCTATATTTCGGAGGTCTTTTCTTATGGTCAAATATTCCATAGAATTAAAACAACGCGTTATTCAAGA
TTATTTATCTGGCAAGGGAGGCTCTACCTATCTTGCTAAACTGCACAACGTAGGTTCATCTAGTCAGGTTAGACGCTGGATTCGCAATTATCGAGCAGAG
GGACTTCCTACAGCTCACTCCAAAGTCAATAAAAATTATTCTATGGAGTTGAAAGAAAATGCGGTACAATGTTATTTAACAACTGATTTAACGTATGAAG
CTGTGGCAAGAAAATTCGAAATTACTAATTTTACCTTACTTGCAAGCTGGGTTAATCATTTCAAAATTTATGGAGAAGTCCCAATAAGCAAAAAGAGAGG
ACGGCGTAAAAAACTAGAAAGCATTGCATCGTCTATGACTCAGAACCCAAATGATTCTCAACGAATTAAAGAACTTGAACAAGAATTACGTTATGCGCAA
ATTGAGGTAGCTTATTTAAAAGGACTTCGGAGATTGGAGAAAAATGCTCTAATGAACAAAAATCAAGACTCATCTACAGTCTCCGTAAAACCTTCAAACT
CAAAGAAATCTTGAAAGTTACAGGATTCCCTAAAGCTACTTATTATTATTGGGTTAACTGTTTTGAACGGGTAAACAAAGATGAGCTTATCGAAAAAGAA
ATGCTTAAAATACGTCAAGAACATGCCAATGCAGGTTATCGTCCAATGAGTGAATTACTTAAGCAACGTGGCTATCACGTCAACCACAAGAAGGTACAGC
GCTTAATGAAGAAGCTAGGGCTTCGTGTGACGTCTTATTGGCACAAATCACGTAAATATAATTCATATAAAGGAAAAGTAGGGACGGTAGCTAAAAATAA
ATTGCACAGACGATTCAGAACTTCCATTCCTCATCAAAAAATCACAACAGATACGACAGAATTCAAATATTATGAAGATGGAATTCAGAAAAAGTGTTAT
CTCAATCCTTACATTGATTTATTTAATAGCGAGGTGATTAGTTATCATATCTCTAAACAACCCTCTTATCAATCAATTGATATTGCTCTAAATCAAGCCT
TAGCTGTGACATCTGATTGTCCTTATCGACGTACTTTCCACTCAGATCAAGGATGGGGATACCAAATGAGAGACTATGTTTCTAAATTAAAATCTCATAG
AATTTTTCAGTCTATGAGCCGTAAAGGAAACTGTCATGATAATTCAGTTATGGAGAATTTCTTTGGGCTACTTAAACAAGAAATTTACTACGGACATATC
TTCTCGTCTTTCGAAGAACTTGAACAGGTTATTGTAATCTGGATTAGGTACTATAATACAAAACGAATCAAACAAAAATTGAACTGGATGAGTCCAATTC
AATTTCGCTTGAATTACCAAAACAATTAAAAAAATCCAAGTATTTCTACTTGGATAAAAAGTCTAACTTTTGGGGTGCACATCA
TTATTTATCTGGCAAGGGAGGCTCTACCTATCTTGCTAAACTGCACAACGTAGGTTCATCTAGTCAGGTTAGACGCTGGATTCGCAATTATCGAGCAGAG
GGACTTCCTACAGCTCACTCCAAAGTCAATAAAAATTATTCTATGGAGTTGAAAGAAAATGCGGTACAATGTTATTTAACAACTGATTTAACGTATGAAG
CTGTGGCAAGAAAATTCGAAATTACTAATTTTACCTTACTTGCAAGCTGGGTTAATCATTTCAAAATTTATGGAGAAGTCCCAATAAGCAAAAAGAGAGG
ACGGCGTAAAAAACTAGAAAGCATTGCATCGTCTATGACTCAGAACCCAAATGATTCTCAACGAATTAAAGAACTTGAACAAGAATTACGTTATGCGCAA
ATTGAGGTAGCTTATTTAAAAGGACTTCGGAGATTGGAGAAAAATGCTCTAATGAACAAAAATCAAGACTCATCTACAGTCTCCGTAAAACCTTCAAACT
CAAAGAAATCTTGAAAGTTACAGGATTCCCTAAAGCTACTTATTATTATTGGGTTAACTGTTTTGAACGGGTAAACAAAGATGAGCTTATCGAAAAAGAA
ATGCTTAAAATACGTCAAGAACATGCCAATGCAGGTTATCGTCCAATGAGTGAATTACTTAAGCAACGTGGCTATCACGTCAACCACAAGAAGGTACAGC
GCTTAATGAAGAAGCTAGGGCTTCGTGTGACGTCTTATTGGCACAAATCACGTAAATATAATTCATATAAAGGAAAAGTAGGGACGGTAGCTAAAAATAA
ATTGCACAGACGATTCAGAACTTCCATTCCTCATCAAAAAATCACAACAGATACGACAGAATTCAAATATTATGAAGATGGAATTCAGAAAAAGTGTTAT
CTCAATCCTTACATTGATTTATTTAATAGCGAGGTGATTAGTTATCATATCTCTAAACAACCCTCTTATCAATCAATTGATATTGCTCTAAATCAAGCCT
TAGCTGTGACATCTGATTGTCCTTATCGACGTACTTTCCACTCAGATCAAGGATGGGGATACCAAATGAGAGACTATGTTTCTAAATTAAAATCTCATAG
AATTTTTCAGTCTATGAGCCGTAAAGGAAACTGTCATGATAATTCAGTTATGGAGAATTTCTTTGGGCTACTTAAACAAGAAATTTACTACGGACATATC
TTCTCGTCTTTCGAAGAACTTGAACAGGTTATTGTAATCTGGATTAGGTACTATAATACAAAACGAATCAAACAAAAATTGAACTGGATGAGTCCAATTC
AATTTCGCTTGAATTACCAAAACAATTAAAAAAATCCAAGTATTTCTACTTGGATAAAAAGTCTAACTTTTGGGGTGCACATCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
558 bp | 185 aa | 57 | 614 | + | No |
Description : First part of the transposase
ORF sequence :
MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKNYSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVN
HFKIYGEVPISKKRGRRKKLESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPSNSKKS
HFKIYGEVPISKKRGRRKKLESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKGLRRLEKNALMNKNQDSSTVSVKPSNSKKS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 506 | 1429 | + | No |
Description : Second part of the transposase
ORF sequence :
GSLFKRTSEIGEKCSNEQKSRLIYSLRKTFKLKEILKVTGFPKATYYYWVNCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHKKVQRL
MKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKYYEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALA
VTSDCPYRRTFHSDQGWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELEQVIVIWIRYYNTKRIKQKLNWMSPIQF
RLNYQNN
MKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDTTEFKYYEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALA
VTSDCPYRRTFHSDQGWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVMENFFGLLKQEIYYGHIFSSFEELEQVIVIWIRYYNTKRIKQKLNWMSPIQF
RLNYQNN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1373 bp | 457 aa | 57 | 1429 | + | Yes |
Chemistry : DDE
ORF sequence :
MVKYSIELKQRVIQDYLSGKGGSTYLAKLHNVGSSSQVRRWIRNYRAEGLPTAHSKVNKNYSMELKENAVQCYLTTDLTYEAVARKFEITNFTLLASWVN
HFKIYGEVPISKKRGRRKKLESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKRTSEIGEKCSNEQKSRLIYSLRKTFKLKEILKVTGFPKATYYYWV
NCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHKKVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDT
TEFKYYEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALAVTSDCPYRRTFHSDQGWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVME
NFFGLLKQEIYYGHIFSSFEELEQVIVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN
HFKIYGEVPISKKRGRRKKLESIASSMTQNPNDSQRIKELEQELRYAQIEVAYLKRTSEIGEKCSNEQKSRLIYSLRKTFKLKEILKVTGFPKATYYYWV
NCFERVNKDELIEKEMLKIRQEHANAGYRPMSELLKQRGYHVNHKKVQRLMKKLGLRVTSYWHKSRKYNSYKGKVGTVAKNKLHRRFRTSIPHQKITTDT
TEFKYYEDGIQKKCYLNPYIDLFNSEVISYHISKQPSYQSIDIALNQALAVTSDCPYRRTFHSDQGWGYQMRDYVSKLKSHRIFQSMSRKGNCHDNSVME
NFFGLLKQEIYYGHIFSSFEELEQVIVIWIRYYNTKRIKQKLNWMSPIQFRLNYQNN
Blast result :
Comments
ISLla3 is 57% aa similar to ISEnfa3.
The third ORF is a putative ORFAB transposase reconstructed in sillico by possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in sillico by possible -1 frameshift.
References
1] Eraclio,G., Ricci,G., Fortina, M.G. (2014) Paper in preparation
2] Eraclio,G. (2014) Direct submission to ISfinder
2] Eraclio,G. (2014) Direct submission to ISfinder