ISCca4
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| Y | Candidatus Cardinium | Candidatus Cardinium hertigii BtQ-VLC CBQZ00000000, contig CHV_a Cardinium endosymbiont cBtQ1 of Bemisia tabaci, WGS project |
DNA section
IS Length : 999 bp
Ends
IR Length : 18/19
IRL : ACGTCAGTTTTGGATTAGAAATTAAGAAAAGAGTATAAAAAGCTCCTTTG
IRR : ACGTGAGTTTCGGATTAGACTTATTGTAAACCAGTTGTATATATATTATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATTAAGAATA | TTAATA | AGTACAAACT | 6 |
| TTGTAGTTCG | TATTA | TATTTTTAGA | 5 |
| CTAAACAGAT | TATAA | CTACATTATC | 5 |
| CTTTTTTGAT | TTTTA | GGATAAAATC | 5 |
| CATATTTGCG | TATAA | AGAAGCTCCT | 5 |
| TCAATAGTGT | TATTA | GAAAATCAAT | 5 |
| TTATATTGCT | TACTA | AGAAGTTCTT | 5 |
| TATGAAAATC | TAATC | CAGAGTTCAG | 5 |
| AATCAAATCT | TATAA | AGAAATCACA | 5 |
| CTAAAGTTAG | TATAA | GAAAAGAAAC | 5 |
| ATTTACTTAC | TGGTA | GTTTTCTTTT | 5 |
| ATATGTTTTC | TATTA | GTTATATAGG | 5 |
| TTGTAGTTCG | TATTA | TATTTTTAGA | 5 |
| TTAAATTGAC | AATAA | AATTAGGTAT | 5 |
| AGTTTTTTAC | TTATA | GATAGTAGAT | 5 |
| GTAGTTCGTA | TTA | TTATATTTTT | 3 |
| GTAGTTCGTA | TTA | TTATATTTTT | 3 |
| TATTGGGCTA | TTA | TTATATTTTT | 3 |
| GAATTTATAT | TAACAGGTAT | 0 | |
| GTTCGTATAA | TATTAAGTTT | 0 | |
| GTTCGTATAA | TTATTATATT | 0 | |
| TAGATTATAC | TAGATATAAA | 0 |
DNA sequence
ACGTCAGTTTTGGATTAGAAATTAAGAAAAGAGTATAAAAAGCTCCTTTGTGTTTTAAATTTGTGGGATTGAAAAATAATCATAAAAACCAAAGGAGCCG
GATATGAATGTATCAAAATTAGTTGAAATATATTACGCTGTTGATGAATTTCTTATAAAATTTATGCCTTATATGGAATCACATTTGTTACCTACTTCAG
ATAGAAAACCTACTAGAACATGTTCACTGACTTTGAGCGAAATAATGACAATATTAATTGCTTTTCATGTAATTGGCTTTAGAAATTTTAAGTTGTATTA
TATTCATTTACAACAATTTCATTCTAATGACTTTTGCAAGTTAGTAAGCTATAGTAGATTTATATCCCTAGTTCAAAGAACAGTAGTTCCATTTTACTTT
TTTTCTCAAAGTCTTTCTAAAACGAGAACAGGCTGTTATTTTATGGATTCAACCGCTATAAAGGTTTGTAATATAAAAAGAGCTTATGCTCATAAAGTAT
TTAAGACAATTGCTAGTAAAGGTAAAACTACTACTGGATGGTTTTACGGAATCAAATTAAACTTGATTGTCAATGATTTAGGAGAAATTATGAATTTTTC
TCTTACTACAGGTAAGTCCAATGATAGATGGCCAGTAGAAAACTTATGTAAAAATTTGATCGGAAAAGTATTTGCTGATAAAGGCTACTTGAGTAAAGAA
TTATTTGAAAAACTTATGGGAAAAGGCATAGAACTGATTACTCAAATCAGAAAAAATATGAAAAATGCTTTCATGCCTATCTGGGATAGGCTAATGCTTC
GAAAGAGATCTATCATTGAAACCATTATCGATCAGCTTAAAAATATTAGTCAGATAGAACACTCCAGGCATAGAAGTATACCTAATTTTATTGTCAATTT
AATAGCTGGTATTACAGCTTATTCACTAAAAGAGAAAAAACCGGCTATAGATAATATATATACAACTGGTTTACAATAAGTCTAATCCGAAACTCACGT
GATATGAATGTATCAAAATTAGTTGAAATATATTACGCTGTTGATGAATTTCTTATAAAATTTATGCCTTATATGGAATCACATTTGTTACCTACTTCAG
ATAGAAAACCTACTAGAACATGTTCACTGACTTTGAGCGAAATAATGACAATATTAATTGCTTTTCATGTAATTGGCTTTAGAAATTTTAAGTTGTATTA
TATTCATTTACAACAATTTCATTCTAATGACTTTTGCAAGTTAGTAAGCTATAGTAGATTTATATCCCTAGTTCAAAGAACAGTAGTTCCATTTTACTTT
TTTTCTCAAAGTCTTTCTAAAACGAGAACAGGCTGTTATTTTATGGATTCAACCGCTATAAAGGTTTGTAATATAAAAAGAGCTTATGCTCATAAAGTAT
TTAAGACAATTGCTAGTAAAGGTAAAACTACTACTGGATGGTTTTACGGAATCAAATTAAACTTGATTGTCAATGATTTAGGAGAAATTATGAATTTTTC
TCTTACTACAGGTAAGTCCAATGATAGATGGCCAGTAGAAAACTTATGTAAAAATTTGATCGGAAAAGTATTTGCTGATAAAGGCTACTTGAGTAAAGAA
TTATTTGAAAAACTTATGGGAAAAGGCATAGAACTGATTACTCAAATCAGAAAAAATATGAAAAATGCTTTCATGCCTATCTGGGATAGGCTAATGCTTC
GAAAGAGATCTATCATTGAAACCATTATCGATCAGCTTAAAAATATTAGTCAGATAGAACACTCCAGGCATAGAAGTATACCTAATTTTATTGTCAATTT
AATAGCTGGTATTACAGCTTATTCACTAAAAGAGAAAAAACCGGCTATAGATAATATATATACAACTGGTTTACAATAAGTCTAATCCGAAACTCACGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 876 bp | 291 aa | 104 | 979 | + | No |
Chemistry : DDE
ORF sequence :
MNVSKLVEIYYAVDEFLIKFMPYMESHLLPTSDRKPTRTCSLTLSEIMTILIAFHVIGFRNFKLYYIHLQQFHSNDFCKLVSYSRFISLVQRTVVPFYFF
SQSLSKTRTGCYFMDSTAIKVCNIKRAYAHKVFKTIASKGKTTTGWFYGIKLNLIVNDLGEIMNFSLTTGKSNDRWPVENLCKNLIGKVFADKGYLSKEL
FEKLMGKGIELITQIRKNMKNAFMPIWDRLMLRKRSIIETIIDQLKNISQIEHSRHRSIPNFIVNLIAGITAYSLKEKKPAIDNIYTTGLQ
SQSLSKTRTGCYFMDSTAIKVCNIKRAYAHKVFKTIASKGKTTTGWFYGIKLNLIVNDLGEIMNFSLTTGKSNDRWPVENLCKNLIGKVFADKGYLSKEL
FEKLMGKGIELITQIRKNMKNAFMPIWDRLMLRKRSIIETIIDQLKNISQIEHSRHRSIPNFIVNLIAGITAYSLKEKKPAIDNIYTTGLQ
Blast result :
Comments
ISCca4 is 91% aa similar to ISCca1.
Genome in progress, Accession Number: CBQZ010000001.
Genome in progress, Accession Number: CBQZ010000001.
References
1] Santos-Garcia D, Rollat-Farnier PA, Beitia F, Zchori-Fein E, Vavre F, Mouton L, Moya A, Latorre A, Silva FJ. (2014) Genome Biol Evol. Apr 10
2] Santos-Garcia D. (2012) Direct submission
2] Santos-Garcia D. (2012) Direct submission