ISIde2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ideonella dechloratans | Ideonella dechloratans |
DNA section
IS Length : 2529 bp
Ends
IR Length : 45/50
IRL : TGCGTATTCCAGACCAAACTGGACACCGATTCCACGGCAAACTGGACAGT
IRR : TGCGTATTCCACGCAAACTGGACAGCCAGTCCACGGCAAACTGGACAGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTGAATTAG | GCGTGTCGAG | 0 |
DNA sequence
TGCGTATTCCAGACCAAACTGGACACCGATTCCACGGCAAACTGGACAGTGATTCCAGAGCAATCTGGACAGTAAAAATAGTAACGTAGCGCGCGGGATA
ACCGTGGCACTCTCGGAGATTTTTCTTCGGAGACCACATGGCGAACAACAGGTTATCCATGCGCAAAATTACAGAAGCACTACGGCTGCATTTCGAGCAC
GACCGCACCAACCGTGAAATCGCCCTGGTCATCGGCACCTCGCCGACCACCGTCGGGGAATATCTGCGTCGAGCCCGTGTGGCTGGCATTGGTTATCCCT
TGCCAGACGGGCTGGATGACGCCGCCATTGAGTCCCGCCTCTTCCCGCCGGCAGTATCGGCGGAGGTCATCCGCCTGGAGCCCGACTGGGCATGGGTGCA
CCGAGAGATGCGCAAGAAGAGCGTCACGCTCGACTTGCTGTGGCAGGAATACAAGGCGGATCACCCGGATGGTTACCTATATAGTTGGTTCTGCGAACAT
TACCGACAGTGGGCCGGCAAGCTGTCGGTCAGCATGCGGCAGACGCACACCCCCGGCGAGAAACTGTTTGTCGACTATGTCGGCCAGACGCTGTCGATCA
TTGATGGCGCCACTGGTGAAATTCGCCAGGCACAACTGTTCGTCGCCGTCCTCGGCGCATCCAATTACACCTATGCCGAAGCGACCTGGACGCAGAAACT
GCCGGACTGGATTGGCTCCCATGTCCGCACCTTCGAGTTCCTTGGCGGCGTCACTGCGATCCTTGTCCCAGACAACCTCAAGTCAGGCGTCAAACATGCC
TCCTACTACGATCCGGAACTCAATCCGACCTATCAGGACTTCGCCCGGCATTACGGCGTAGCAGTGCTGCCGGCACGTCCATACAAGCCCAAGGACAAAG
CCAAGGTCGAAGGCGGCGTGCTGATTGTGGAACGCTGGATACTGGCGCGGCTGCGCAATCAACGCTTCTTCAGTTTGGCGGAAGCCAACCGCGCCATCGC
CCAATTGTTGGAGTCGCTGAATCAGCGGCCGTTCAAGAAACTGCCTGGCTGCCGCCACAGCGCCTTCCTTGAGATGGATCTCCCTGCGCTCAATCCCCTC
CCGCAATGCCGCTATGAATACGCCGAATGGAAGAAGGTGCGCGTTGGCGTTGATTACCACGTTGAAGGTGATGAGCATTACTACTCGGTGCCTTACCGCC
TTTCCCGCCTGCAATTGGAGCTGCGCATGACCGTCACCACGGTGGAGGTGTTTCATCGAGGCCAGCGCATTGCCGCACACGTGCGCAGCCCGATCAAAAA
TCACCACACCACGCTGGATGCGCACATGCCCCCGGAACACCAAGCCGTTGCCGGCTGGAATGGCCCGCGGTTGCTCGACTGGGCACAGAAGATTGGTAGC
TCCACTGAATCCGCGGTGCGAGTCATGCTGGGCGCGCGCAAGCATCCACAACAAAGCTATCGCGCCTGCCTCGGCGTACTGCGTCTGGCCAAGGGCTTTG
GCAATGATCGTTTAAATGCTGCGTGTGCTCGTGCTCTGAAACTGAACGCGGCGGGCTACCGCAGCATTCATTCAATACTCAAGAACGGCCTGGACCGGCA
ACAGCCGGCGATAGCCATTCAGGCATACCTGCCACTGGATCACGCCAATGTGCGTGGCCCGAACTATTACCATTAACACCACAGGAGAACCACCCATGCT
CAATCATCCAACACACGACCAACTCCAGCAATTACGCCTGTTCGGAATGGCACGCGCCCTCGCCGAACAGCAGGCCATTCCCGACATTACGCATCTGGCA
TTCGAGGAACGCCTCGGCCTCTTGGTTGAGCGCGAAGTCACTGAGCGTGATTCCCGACTAACTTCCAGCCGGCTACGGCGTGCAAAGCTCAAACAGGCAG
CCGTTGCCGAGGACGTGGACTACCGCGCAGCACGAAGCCTGGACCGCACCTTATTCAACCGGCTATTGACCGGCTCGTGGGTAGCAGAACACCAGAATGT
GCTGATCACAGGCCCCACGGGCGTCGGCAAGACTTGGCTGGCCTGCGCTCTGGCCAACCAAGCGTGCCGTCAGGGCAAATCGGTGCTTTACCTGCGGGTG
CCGCGATTGTTCGAGGATGTGGCGATTGCTCATGGGGACGGGCGTTACGGCAAGCTGATGATGCAACTCGCCAAGACCGATGTGCTGCTATTGGACGACT
GGGGATTGGCGTTACTGACCGACTCCGCGCGACGTGACTTGCTGGAAATCTTTGACGACCGGCACGGCCACCGTTCAACCATCGTAACCAGTCAATTGCC
GGTGGCGAACTGGCATGAATCCATCGGCGACCCCACCTTGGCTGACGCCATTCTGGATCGCCTGGTTCACAACGCTCATCAATTAATTCTGACCGGAGAA
TCCATGAGAAAACACAAAAATAGTTTGACCCAAAAACAAGTTTCAGAGTAAAACTATAACCCCCGCGTCGCTACGCTCCGACTGTCCAGTTTGCCGTGGA
CTGGCTGTCCAGTTTGCGTGGAATACGCA
ACCGTGGCACTCTCGGAGATTTTTCTTCGGAGACCACATGGCGAACAACAGGTTATCCATGCGCAAAATTACAGAAGCACTACGGCTGCATTTCGAGCAC
GACCGCACCAACCGTGAAATCGCCCTGGTCATCGGCACCTCGCCGACCACCGTCGGGGAATATCTGCGTCGAGCCCGTGTGGCTGGCATTGGTTATCCCT
TGCCAGACGGGCTGGATGACGCCGCCATTGAGTCCCGCCTCTTCCCGCCGGCAGTATCGGCGGAGGTCATCCGCCTGGAGCCCGACTGGGCATGGGTGCA
CCGAGAGATGCGCAAGAAGAGCGTCACGCTCGACTTGCTGTGGCAGGAATACAAGGCGGATCACCCGGATGGTTACCTATATAGTTGGTTCTGCGAACAT
TACCGACAGTGGGCCGGCAAGCTGTCGGTCAGCATGCGGCAGACGCACACCCCCGGCGAGAAACTGTTTGTCGACTATGTCGGCCAGACGCTGTCGATCA
TTGATGGCGCCACTGGTGAAATTCGCCAGGCACAACTGTTCGTCGCCGTCCTCGGCGCATCCAATTACACCTATGCCGAAGCGACCTGGACGCAGAAACT
GCCGGACTGGATTGGCTCCCATGTCCGCACCTTCGAGTTCCTTGGCGGCGTCACTGCGATCCTTGTCCCAGACAACCTCAAGTCAGGCGTCAAACATGCC
TCCTACTACGATCCGGAACTCAATCCGACCTATCAGGACTTCGCCCGGCATTACGGCGTAGCAGTGCTGCCGGCACGTCCATACAAGCCCAAGGACAAAG
CCAAGGTCGAAGGCGGCGTGCTGATTGTGGAACGCTGGATACTGGCGCGGCTGCGCAATCAACGCTTCTTCAGTTTGGCGGAAGCCAACCGCGCCATCGC
CCAATTGTTGGAGTCGCTGAATCAGCGGCCGTTCAAGAAACTGCCTGGCTGCCGCCACAGCGCCTTCCTTGAGATGGATCTCCCTGCGCTCAATCCCCTC
CCGCAATGCCGCTATGAATACGCCGAATGGAAGAAGGTGCGCGTTGGCGTTGATTACCACGTTGAAGGTGATGAGCATTACTACTCGGTGCCTTACCGCC
TTTCCCGCCTGCAATTGGAGCTGCGCATGACCGTCACCACGGTGGAGGTGTTTCATCGAGGCCAGCGCATTGCCGCACACGTGCGCAGCCCGATCAAAAA
TCACCACACCACGCTGGATGCGCACATGCCCCCGGAACACCAAGCCGTTGCCGGCTGGAATGGCCCGCGGTTGCTCGACTGGGCACAGAAGATTGGTAGC
TCCACTGAATCCGCGGTGCGAGTCATGCTGGGCGCGCGCAAGCATCCACAACAAAGCTATCGCGCCTGCCTCGGCGTACTGCGTCTGGCCAAGGGCTTTG
GCAATGATCGTTTAAATGCTGCGTGTGCTCGTGCTCTGAAACTGAACGCGGCGGGCTACCGCAGCATTCATTCAATACTCAAGAACGGCCTGGACCGGCA
ACAGCCGGCGATAGCCATTCAGGCATACCTGCCACTGGATCACGCCAATGTGCGTGGCCCGAACTATTACCATTAACACCACAGGAGAACCACCCATGCT
CAATCATCCAACACACGACCAACTCCAGCAATTACGCCTGTTCGGAATGGCACGCGCCCTCGCCGAACAGCAGGCCATTCCCGACATTACGCATCTGGCA
TTCGAGGAACGCCTCGGCCTCTTGGTTGAGCGCGAAGTCACTGAGCGTGATTCCCGACTAACTTCCAGCCGGCTACGGCGTGCAAAGCTCAAACAGGCAG
CCGTTGCCGAGGACGTGGACTACCGCGCAGCACGAAGCCTGGACCGCACCTTATTCAACCGGCTATTGACCGGCTCGTGGGTAGCAGAACACCAGAATGT
GCTGATCACAGGCCCCACGGGCGTCGGCAAGACTTGGCTGGCCTGCGCTCTGGCCAACCAAGCGTGCCGTCAGGGCAAATCGGTGCTTTACCTGCGGGTG
CCGCGATTGTTCGAGGATGTGGCGATTGCTCATGGGGACGGGCGTTACGGCAAGCTGATGATGCAACTCGCCAAGACCGATGTGCTGCTATTGGACGACT
GGGGATTGGCGTTACTGACCGACTCCGCGCGACGTGACTTGCTGGAAATCTTTGACGACCGGCACGGCCACCGTTCAACCATCGTAACCAGTCAATTGCC
GGTGGCGAACTGGCATGAATCCATCGGCGACCCCACCTTGGCTGACGCCATTCTGGATCGCCTGGTTCACAACGCTCATCAATTAATTCTGACCGGAGAA
TCCATGAGAAAACACAAAAATAGTTTGACCCAAAAACAAGTTTCAGAGTAAAACTATAACCCCCGCGTCGCTACGCTCCGACTGTCCAGTTTGCCGTGGA
CTGGCTGTCCAGTTTGCGTGGAATACGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1539 bp | 512 aa | 138 | 1676 | + | No |
Chemistry : DDE
ORF sequence :
MANNRLSMRKITEALRLHFEHDRTNREIALVIGTSPTTVGEYLRRARVAGIGYPLPDGLDDAAIESRLFPPAVSAEVIRLEPDWAWVHREMRKKSVTLDL
LWQEYKADHPDGYLYSWFCEHYRQWAGKLSVSMRQTHTPGEKLFVDYVGQTLSIIDGATGEIRQAQLFVAVLGASNYTYAEATWTQKLPDWIGSHVRTFE
FLGGVTAILVPDNLKSGVKHASYYDPELNPTYQDFARHYGVAVLPARPYKPKDKAKVEGGVLIVERWILARLRNQRFFSLAEANRAIAQLLESLNQRPFK
KLPGCRHSAFLEMDLPALNPLPQCRYEYAEWKKVRVGVDYHVEGDEHYYSVPYRLSRLQLELRMTVTTVEVFHRGQRIAAHVRSPIKNHHTTLDAHMPPE
HQAVAGWNGPRLLDWAQKIGSSTESAVRVMLGARKHPQQSYRACLGVLRLAKGFGNDRLNAACARALKLNAAGYRSIHSILKNGLDRQQPAIAIQAYLPL
DHANVRGPNYYH
LWQEYKADHPDGYLYSWFCEHYRQWAGKLSVSMRQTHTPGEKLFVDYVGQTLSIIDGATGEIRQAQLFVAVLGASNYTYAEATWTQKLPDWIGSHVRTFE
FLGGVTAILVPDNLKSGVKHASYYDPELNPTYQDFARHYGVAVLPARPYKPKDKAKVEGGVLIVERWILARLRNQRFFSLAEANRAIAQLLESLNQRPFK
KLPGCRHSAFLEMDLPALNPLPQCRYEYAEWKKVRVGVDYHVEGDEHYYSVPYRLSRLQLELRMTVTTVEVFHRGQRIAAHVRSPIKNHHTTLDAHMPPE
HQAVAGWNGPRLLDWAQKIGSSTESAVRVMLGARKHPQQSYRACLGVLRLAKGFGNDRLNAACARALKLNAAGYRSIHSILKNGLDRQQPAIAIQAYLPL
DHANVRGPNYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1696 | 2451 | + | No |
AG : IS21 helper
ORF sequence :
MLNHPTHDQLQQLRLFGMARALAEQQAIPDITHLAFEERLGLLVEREVTERDSRLTSSRLRRAKLKQAAVAEDVDYRAARSLDRTLFNRLLTGSWVAEHQ
NVLITGPTGVGKTWLACALANQACRQGKSVLYLRVPRLFEDVAIAHGDGRYGKLMMQLAKTDVLLLDDWGLALLTDSARRDLLEIFDDRHGHRSTIVTSQ
LPVANWHESIGDPTLADAILDRLVHNAHQLILTGESMRKHKNSLTQKQVSE
NVLITGPTGVGKTWLACALANQACRQGKSVLYLRVPRLFEDVAIAHGDGRYGKLMMQLAKTDVLLLDDWGLALLTDSARRDLLEIFDDRHGHRSTIVTSQ
LPVANWHESIGDPTLADAILDRLVHNAHQLILTGESMRKHKNSLTQKQVSE
Blast result :
Comments
ISIde2 is 71% (istA, the transposase) and 76% (istB, helper of transposition) aa similar to ISSpu5.
References
1] Iain C. Clark (2014) Direct submission to ISfinder
2] Iain C. Clark, Ryan A. Melnyk, Anna Engelbrektson, John D. Coates (2013) mBio. Jul-Aug; 4(4): e00379-13
2] Iain C. Clark, Ryan A. Melnyk, Anna Engelbrektson, John D. Coates (2013) mBio. Jul-Aug; 4(4): e00379-13