ISIde1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AJ566363 ND Ideonella dechloratans
Ideonella dechloratans
DNA section
IS Length : 1448 bp

Ends


IR Length : 46/47

IRL : GGCTCTATGCCGTTTCCAGTGGAAATTGACTTCTCAACAAACATGACCCT
IRR : GGCTCTGTGCCGTTTCCAGTGGAAATTGACTTCTCAACAAACATGACGGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTAACACTATATTTTTTCTCCTTTTG8

DNA sequence

GGCTCTATGCCGTTTCCAGTGGAAATTGACTTCTCAACAAACATGACCCTCGGTGGTACAACCGCCCGACACTGACGCCGACCTCGCGCCCGATGAACAC
CCAGATCGAAGCTCTCTTCACCACCGCACTTGGCCTGCAGCCGCCCTGGTACGTCGCCAAGGTCGAGCTCAACACAGCCAAGCGGCGGATCGACTTCGAG
GTCGAGCACACCGGCGCTCGTGCTACGTGTCCGGCGTGTGGGGCCGAGCCCCAGTTGATCCACGACCGGGTCCGGCGTAGCTGGCGTCACCTGGATTTCT
TTCAGTTCGAAGCGTGGCTGCATGCCGCGATTCCGCGCGTTCAGTGCAACGGCTGCGGCAAGACCACGCAGCTGCCGGTGCCGTGGGCGCGTGAGGGGAG
CGGCTTTACCCTGCTGTTCGAGGCGCTGAGTCTGTCGCTGTGCCGAGAGATGCCGGTGCGCCAGGCGGCCAACCAGTTGCGGGTTGCCCCGAAGCGCCTG
TGGCGCCGCGTGCGCCATTACGTCGAGGTGGCCCGTGCCAAAGACGACATGTCGTGCGTGCGCTACGTCGGGATCGACGAGACCAGCGTCAAGCGTGGTC
ACGAGTACATCACCGTCGTGCATGACCTTGAAGCCAAGCGCTTGCTGTTTGCCACCCCGGGGCGCGGTCACGCTACGTTGCAGGTCTTTGCCCAGGACAT
GCGTGCGCACGGCGGCGATCCGCTGACCATTGAGCACGCGTGTATCGACATGAGCGCGGCCTACGCCAAGGGAGTCGACCAGTCGCTGCCCAATGCCCGG
ATCAGCTACGACCGCTTTCATGTCGTGGCGCTGGCCAACGCGGCGATGGACGAGGTGCGTCGCGAAGAGATGCGTAGCTCGGCGGCAGCGGTGCGCGAAG
CGGTCGGCGCACAGAGCAAGAAGACGCTTCGTCAGCTGCTGTGGGGGATGCGCAAGAACCCGGTGAGCTGGACCCGTGCCCAGTTCGAGGCGATGCACTG
GCTGCAACGCTCGAATCTGAAGAGCGCGCGTGCGTGGCGCCTGAAGCAGGCACTGCGGCTGGTCTATCGCGATGCAGCCGCGAGCAACAGCGAGGAGATC
GCGCAAGGTGCCATGAGCAAATGGCTGAGCTGGGCGCGCCGCAGCCGCCTGGAGCCCTTCAAGCGGCTGGCCCTCACCCTGAAGGAGCACCTCGGCGGCG
TCGTGCGCGGCATGCTCGACGGACGCAGCAACGCCTACGTTGAAGCGATGAACGGCCTGCTCCAACAGACGAAGACCGCCGCCCGAGGCTTCCGCAACAT
CGAGAACTTCATCGCCATGGCCTACCTGCGAATGTCCAAGCTCAAGCATCTACCGCAGAACCCCCTGGTGCCGGCCGTCGCCCGCGACTACGGGCGCTAC
CGTCATGTTTGTTGAGAAGTCAATTTCCACTGGAAACGGCACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1323 bp440 aa931415+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNTQIEALFTTALGLQPPWYVAKVELNTAKRRIDFEVEHTGARATCPACGAEPQLIHDRVRRSWRHLDFFQFEAWLHAAIPRVQCNGCGKTTQLPVPWAR
EGSGFTLLFEALSLSLCREMPVRQAANQLRVAPKRLWRRVRHYVEVARAKDDMSCVRYVGIDETSVKRGHEYITVVHDLEAKRLLFATPGRGHATLQVFA
QDMRAHGGDPLTIEHACIDMSAAYAKGVDQSLPNARISYDRFHVVALANAAMDEVRREEMRSSAAAVREAVGAQSKKTLRQLLWGMRKNPVSWTRAQFEA
MHWLQRSNLKSARAWRLKQALRLVYRDAAASNSEEIAQGAMSKWLSWARRSRLEPFKRLALTLKEHLGGVVRGMLDGRSNAYVEAMNGLLQQTKTAARGF
RNIENFIAMAYLRMSKLKHLPQNPLVPAVARDYGRYRHVC

 

Blast result :
Comments
ISIde1 is 59% aa similar to ISCARN2.
References
1] Submitted by ISfinder (2014).
2] Thorell,H.D., Stenklo,K., Karlsson,J. and Nilsson,T. (2003) Appl. Environ. Microbiol. 69 (9), 5585-5592