ISTli1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_022084 | ND | Thermococcus litoralis | Thermococcus litoralis DSM 5473 |
DNA section
IS Length : 905 bp
Ends
IR Length : 15/16
IRL : ACCCTAGTTCCCATCAGATCGTTGGAGTTATAAGCACTTAAGTTTTTTGG
IRR : ACCCTAGTTCCCACCACCTGTGAAGTTGTACAATCTGTCCAGATTCACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAAATTAA | CACGAGAGTA | 0 |
DNA sequence
ACCCTAGTTCCCATCAGATCGTTGGAGTTATAAGCACTTAAGTTTTTTGGTTGATTGGTGGTTGTATTGAGCTTTCAGAGGAAAATCCTGATCATAAAAT
CCGAAATCTACCCGATAGTCAGCAAACACTACCCAAAAAACACTCACAGGGAAATAATCAGCCTCTACGACCTGATAACCTTCGCAATACTAGCACACTT
GCACTTTAACGGAGTTTACAAGCACGCTTACAGAGTCCTAATCGAAGAAATGAAGCTAACAGAACGCTTGAACAGGCACGAAAAACTCCTACTCCTAGCA
CAGGAAGAATTATTCAAAAAACACGCCAGAGAATACGTTAGAATACTGGACTCAAAGCCCATTCAGACCAAGGAGTTGGCCAGAAAAAACAGGAAGGATA
AGGAGGGTTCTTTAGAAGTCATCTCTGAAAAGCCTGCAGTTGAGTTTTTTCCCTCTAAAAAAAGTTTTACTATGGGTACAAGCTGACCTGTTACTCTGAT
GGAAATTTGCTGGCTTTACTGTCTGTTGATCCGGCGAATAAGCATGATGTGAGTGTTGTCAGGGAAAAGTTCTGGGTGATTGTTGAGGAGTTTTCTGGCT
GTTTTCTGTTTTTGGATAAGGGGTATGTTAGCAGGGGGCTCGAGGAGGAATTTCTGAGGTTTGGCGTTGTTTACACGCCAGTAAAGCGGGGGAATCAGAT
TAGTAATCTGGAAGAGAAGAAGTTTTACAAGTACGTGTCTGACTTTCGCAGGAGGGTTGAGACTTTGTTTTTTAGGTTTTCTGAGTTTCTTCTGAGGCTG
AGCAGGAGTGTTAGTTTGAGGGGGTTAACTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGATTGTACAACTTCACAGGTGGTGGGAACT
AGGGT
CCGAAATCTACCCGATAGTCAGCAAACACTACCCAAAAAACACTCACAGGGAAATAATCAGCCTCTACGACCTGATAACCTTCGCAATACTAGCACACTT
GCACTTTAACGGAGTTTACAAGCACGCTTACAGAGTCCTAATCGAAGAAATGAAGCTAACAGAACGCTTGAACAGGCACGAAAAACTCCTACTCCTAGCA
CAGGAAGAATTATTCAAAAAACACGCCAGAGAATACGTTAGAATACTGGACTCAAAGCCCATTCAGACCAAGGAGTTGGCCAGAAAAAACAGGAAGGATA
AGGAGGGTTCTTTAGAAGTCATCTCTGAAAAGCCTGCAGTTGAGTTTTTTCCCTCTAAAAAAAGTTTTACTATGGGTACAAGCTGACCTGTTACTCTGAT
GGAAATTTGCTGGCTTTACTGTCTGTTGATCCGGCGAATAAGCATGATGTGAGTGTTGTCAGGGAAAAGTTCTGGGTGATTGTTGAGGAGTTTTCTGGCT
GTTTTCTGTTTTTGGATAAGGGGTATGTTAGCAGGGGGCTCGAGGAGGAATTTCTGAGGTTTGGCGTTGTTTACACGCCAGTAAAGCGGGGGAATCAGAT
TAGTAATCTGGAAGAGAAGAAGTTTTACAAGTACGTGTCTGACTTTCGCAGGAGGGTTGAGACTTTGTTTTTTAGGTTTTCTGAGTTTCTTCTGAGGCTG
AGCAGGAGTGTTAGTTTGAGGGGGTTAACTGTCAGGATTTTAGGGGCGATTCTGGCCGTGAATCTGGACAGATTGTACAACTTCACAGGTGGTGGGAACT
AGGGT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
429 bp | 142 aa | 58 | 486 | + | No |
Description : First part of the transposase
ORF sequence :
MVVLSFQRKILIIKSEIYPIVSKHYPKNTHREIISLYDLITFAILAHLHFNGVYKHAYRVLIEEMKLTERLNRHEKLLLLAQEELFKKHAREYVRILDSK
PIQTKELARKNRKDKEGSLEVISEKPAVEFFPSKKSFTMGTS
PIQTKELARKNRKDKEGSLEVISEKPAVEFFPSKKSFTMGTS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 147 aa | 459 | 902 | + | No |
Description : Second part of the transposase
ORF sequence :
KKFYYGYKLTCYSDGNLLALLSVDPANKHDVSVVREKFWVIVEEFSGCFLFLDKGYVSRGLEEEFLRFGVVYTPVKRGNQISNLEEKKFYKYVSDFRRRV
ETLFFRFSEFLLRLSRSVSLRGLTVRILGAILAVNLDRLYNFTGGGN
ETLFFRFSEFLLRLSRSVSLRGLTVRILGAILAVNLDRLYNFTGGGN
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
845 bp | 280 aa | 58 | 902 | + | Yes |
Chemistry : DDE
ORF sequence :
MVVLSFQRKILIIKSEIYPIVSKHYPKNTHREIISLYDLITFAILAHLHFNGVYKHAYRVLIEEMKLTERLNRHEKLLLLAQEELFKKHAREYVRILDSK
PIQTKELARKNRKDKEGSLEVISEKPAVEFFPSKKFYYGYKLTCYSDGNLLALLSVDPANKHDVSVVREKFWVIVEEFSGCFLFLDKGYVSRGLEEEFLR
FGVVYTPVKRGNQISNLEEKKFYKYVSDFRRRVETLFFRFSEFLLRLSRSVSLRGLTVRILGAILAVNLDRLYNFTGGGN
PIQTKELARKNRKDKEGSLEVISEKPAVEFFPSKKFYYGYKLTCYSDGNLLALLSVDPANKHDVSVVREKFWVIVEEFSGCFLFLDKGYVSRGLEEEFLR
FGVVYTPVKRGNQISNLEEKKFYKYVSDFRRRVETLFFRFSEFLLRLSRSVSLRGLTVRILGAILAVNLDRLYNFTGGGN
Blast result :
Comments
ISTli1 is 92% aa similar to ISPfu3. The third ORF is the potential ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] ISfinder annotation (2014)
2] Gardner,A.F., Kumar,S. and Perler,F.B.(2012)J. Bacteriol. 194 (9), 2375-2376
2] Gardner,A.F., Kumar,S. and Perler,F.B.(2012)J. Bacteriol. 194 (9), 2375-2376