ISHxa1

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP002840 ND Halopiger xanaduensis
Halopiger xanaduensis SH-6 plasmid pHALXA01
DNA section
IS Length : 1457 bp

Ends


Left end : AGAGATTTCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAACTGGGAGACTCACCACGCTCGAACGCTCGGATGGATATTCCACGCCGG II struct. : Yes
Right end : CGCGAGAGCGGATGGTTCACACCGAGAGAACAGGGAGACTGCAAACCGTAATATCCCAACGCTCGGGAATCCCACCCCTTCAGGGGTGGGAGGAGGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
AAGAGAAGGCTTATGCGGTTCCGAtcaa

DNA sequence

AGAGATTTCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAACTGGGAGACTCACCACGCTCGAACGCTCGGATGGATATTCCACGCCGG
TCATAATTTTTAATAGTATATTGCTCATAACTGGTTATGAATACAGTACGGATGTTGGAGACGACCCGCACCTATGTCGCACGCATCACGAACCACTCAC
AGGTTCGTGACGACCTCGACCAGTGCGGGTTCGCCGCGTCCAAACTGTGGAACGTCGGCCGCTACTACATCCAACAACGGTGGGCTGAAGACAGTGAGAT
ACCCGACGAAGCCGAGCTGAAGTCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCCCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAG
GCGTTCAATGGGTGGTACAGCTCCGACGATGGCAACAACCCACCGGGCTATCGGAAACGTGGCGATCGACACCCACGCTCCACCGTGACGTGGAAACAGA
AAGGCATCAAGCACGACGCTAAACACGGTCAACTCCGACTCTCGAAAGGCTGGAATCTGAAAGAGGGACGGTCTGACTTCATCCTCGCCGAGTACGAAAC
CCGACCAGACGTAGAAGTCGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGAGACGAATGGGAACTCCACCTCGTCTGCAAGAAAGAAATTCCTGTC
GAAGACGCGCCCGGCGACAACACGGCAGGCATCGACCTTGGCATCAGCAATTACCTCGCCATCGACTACGAGGACGGCCCCTCGGAGTTGTATCCGGGGA
ACGTGCTGAAAGAGGATAAGCACTATTTCACTCGCGAGGAGTACCAGACCGAAGGCGAGAACGGACCGTCAAAGCGTGCGTTGAAAGCTCGTCGGAAACT
CTCCCGACGCAAAGCCCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCGGTGTCTCGAAGAAGATGTGGCGAAGATCGCGGTTGGCGACCTCAGC
GACATCCGGGAAGACGAAAACGGTGACTCGCGGAACTGGGGTCAGTCGGGGAATAAGAAATTGCACGGGTGGGCATTCGACCGGTTCACGAACCTGCTCG
AATACAAGGCCGAAGAACACGGCATCCTCGTTGACCGGGTGAACGAAGACAACACCTCGAAGACGTGTTCGTGTTGTGGGCAGATTCGAGACAGCAACCG
CGTGGAGCGTGGTCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAACGCCGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCC
CCGACCGGGGATATGAGTAACGGCTGGTTGGCCCAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGATGGTTCACACCGAGAGAACAGGGAGACTGCA
AACCGTAATATCCCAACGCTCGGGAATCCCACCCCTTCAGGGGTGGGAGGAGGTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa1521408+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MLETTRTYVARITNHSQVRDDLDQCGFAASKLWNVGRYYIQQRWAEDSEIPDEAELKSELKDHERYSDLHSQSSQRVLEELAEAFNGWYSSDDGNNPPGY
RKRGDRHPRSTVTWKQKGIKHDAKHGQLRLSKGWNLKEGRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGISN
YLAIDYEDGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRALKARRKLSRRKAHFLHTLSKHIVERCLEEDVAKIAVGDLSDIREDENGDSRNWGQSG
NKKLHGWAFDRFTNLLEYKAEEHGILVDRVNEDNTSKTCSCCGQIRDSNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGWFTPREQGDCKP

 

Blast result :
Comments
ISHxa1 is 94% (TnpB) aa similar to ISHmu7.
References
1] Pfeiffer F. (2013) Direct submission.
2] Anderson, I., Tindall, B.J., Rohde, M., Lucas, S., Han, J., Lapidus, A., Cheng, J.F., Goodwin, L., Pitluck, S., Peters, L., Pati, A., Mikhailova, N., Pagani, I., Teshima, H., Han, C., Tapia, R., Land, M., Woyke, T., Klenk, H.P., Kyrpides, N., Ivanova, N. Stand.(2012) Genomic Sci. 6: 31-42