ISHxa1
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP002840 | ND | Halopiger xanaduensis | Halopiger xanaduensis SH-6 plasmid pHALXA01 |
DNA section
IS Length : 1457 bp
Ends
Left end : AGAGATTTCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAACTGGGAGACTCACCACGCTCGAACGCTCGGATGGATATTCCACGCCGG II struct. : Yes
Right end : CGCGAGAGCGGATGGTTCACACCGAGAGAACAGGGAGACTGCAAACCGTAATATCCCAACGCTCGGGAATCCCACCCCTTCAGGGGTGGGAGGAGGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAGAGAAGGC | TTAT | GCGGTTCCGA | tcaa |
DNA sequence
AGAGATTTCGAGGCGAAAACCCACGGCTTTAGCCGTGGGATGAAGCCGACAACTGGGAGACTCACCACGCTCGAACGCTCGGATGGATATTCCACGCCGG
TCATAATTTTTAATAGTATATTGCTCATAACTGGTTATGAATACAGTACGGATGTTGGAGACGACCCGCACCTATGTCGCACGCATCACGAACCACTCAC
AGGTTCGTGACGACCTCGACCAGTGCGGGTTCGCCGCGTCCAAACTGTGGAACGTCGGCCGCTACTACATCCAACAACGGTGGGCTGAAGACAGTGAGAT
ACCCGACGAAGCCGAGCTGAAGTCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCCCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAG
GCGTTCAATGGGTGGTACAGCTCCGACGATGGCAACAACCCACCGGGCTATCGGAAACGTGGCGATCGACACCCACGCTCCACCGTGACGTGGAAACAGA
AAGGCATCAAGCACGACGCTAAACACGGTCAACTCCGACTCTCGAAAGGCTGGAATCTGAAAGAGGGACGGTCTGACTTCATCCTCGCCGAGTACGAAAC
CCGACCAGACGTAGAAGTCGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGAGACGAATGGGAACTCCACCTCGTCTGCAAGAAAGAAATTCCTGTC
GAAGACGCGCCCGGCGACAACACGGCAGGCATCGACCTTGGCATCAGCAATTACCTCGCCATCGACTACGAGGACGGCCCCTCGGAGTTGTATCCGGGGA
ACGTGCTGAAAGAGGATAAGCACTATTTCACTCGCGAGGAGTACCAGACCGAAGGCGAGAACGGACCGTCAAAGCGTGCGTTGAAAGCTCGTCGGAAACT
CTCCCGACGCAAAGCCCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCGGTGTCTCGAAGAAGATGTGGCGAAGATCGCGGTTGGCGACCTCAGC
GACATCCGGGAAGACGAAAACGGTGACTCGCGGAACTGGGGTCAGTCGGGGAATAAGAAATTGCACGGGTGGGCATTCGACCGGTTCACGAACCTGCTCG
AATACAAGGCCGAAGAACACGGCATCCTCGTTGACCGGGTGAACGAAGACAACACCTCGAAGACGTGTTCGTGTTGTGGGCAGATTCGAGACAGCAACCG
CGTGGAGCGTGGTCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAACGCCGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCC
CCGACCGGGGATATGAGTAACGGCTGGTTGGCCCAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGATGGTTCACACCGAGAGAACAGGGAGACTGCA
AACCGTAATATCCCAACGCTCGGGAATCCCACCCCTTCAGGGGTGGGAGGAGGTCAA
TCATAATTTTTAATAGTATATTGCTCATAACTGGTTATGAATACAGTACGGATGTTGGAGACGACCCGCACCTATGTCGCACGCATCACGAACCACTCAC
AGGTTCGTGACGACCTCGACCAGTGCGGGTTCGCCGCGTCCAAACTGTGGAACGTCGGCCGCTACTACATCCAACAACGGTGGGCTGAAGACAGTGAGAT
ACCCGACGAAGCCGAGCTGAAGTCGGAGTTGAAAGACCACGAACGCTACAGTGACCTGCATTCCCAGTCAAGTCAGCGAGTTCTCGAAGAGCTTGCTGAG
GCGTTCAATGGGTGGTACAGCTCCGACGATGGCAACAACCCACCGGGCTATCGGAAACGTGGCGATCGACACCCACGCTCCACCGTGACGTGGAAACAGA
AAGGCATCAAGCACGACGCTAAACACGGTCAACTCCGACTCTCGAAAGGCTGGAATCTGAAAGAGGGACGGTCTGACTTCATCCTCGCCGAGTACGAAAC
CCGACCAGACGTAGAAGTCGAGAACATCCAGCAGGTGCGTGCCGTCTGGAACGGAGACGAATGGGAACTCCACCTCGTCTGCAAGAAAGAAATTCCTGTC
GAAGACGCGCCCGGCGACAACACGGCAGGCATCGACCTTGGCATCAGCAATTACCTCGCCATCGACTACGAGGACGGCCCCTCGGAGTTGTATCCGGGGA
ACGTGCTGAAAGAGGATAAGCACTATTTCACTCGCGAGGAGTACCAGACCGAAGGCGAGAACGGACCGTCAAAGCGTGCGTTGAAAGCTCGTCGGAAACT
CTCCCGACGCAAAGCCCACTTCCTCCACACTCTCAGCAAGCACATCGTTGAGCGGTGTCTCGAAGAAGATGTGGCGAAGATCGCGGTTGGCGACCTCAGC
GACATCCGGGAAGACGAAAACGGTGACTCGCGGAACTGGGGTCAGTCGGGGAATAAGAAATTGCACGGGTGGGCATTCGACCGGTTCACGAACCTGCTCG
AATACAAGGCCGAAGAACACGGCATCCTCGTTGACCGGGTGAACGAAGACAACACCTCGAAGACGTGTTCGTGTTGTGGGCAGATTCGAGACAGCAACCG
CGTGGAGCGTGGTCTGTACGTCTGTGAGTCGTGCGAGACGACGATGAACGCCGACGTGAACGGTGCGGTGAATATCCGACGAAAGATAACTCAGAGTCCC
CCGACCGGGGATATGAGTAACGGCTGGTTGGCCCAGCCCGGAGTCTTCCTGTTCGACCGCGAGAGCGGATGGTTCACACCGAGAGAACAGGGAGACTGCA
AACCGTAATATCCCAACGCTCGGGAATCCCACCCCTTCAGGGGTGGGAGGAGGTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 152 | 1408 | + | No |
AG : TnpB
ORF sequence :
MLETTRTYVARITNHSQVRDDLDQCGFAASKLWNVGRYYIQQRWAEDSEIPDEAELKSELKDHERYSDLHSQSSQRVLEELAEAFNGWYSSDDGNNPPGY
RKRGDRHPRSTVTWKQKGIKHDAKHGQLRLSKGWNLKEGRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGISN
YLAIDYEDGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRALKARRKLSRRKAHFLHTLSKHIVERCLEEDVAKIAVGDLSDIREDENGDSRNWGQSG
NKKLHGWAFDRFTNLLEYKAEEHGILVDRVNEDNTSKTCSCCGQIRDSNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGWFTPREQGDCKP
RKRGDRHPRSTVTWKQKGIKHDAKHGQLRLSKGWNLKEGRSDFILAEYETRPDVEVENIQQVRAVWNGDEWELHLVCKKEIPVEDAPGDNTAGIDLGISN
YLAIDYEDGPSELYPGNVLKEDKHYFTREEYQTEGENGPSKRALKARRKLSRRKAHFLHTLSKHIVERCLEEDVAKIAVGDLSDIREDENGDSRNWGQSG
NKKLHGWAFDRFTNLLEYKAEEHGILVDRVNEDNTSKTCSCCGQIRDSNRVERGLYVCESCETTMNADVNGAVNIRRKITQSPPTGDMSNGWLAQPGVFL
FDRESGWFTPREQGDCKP
Blast result :
Comments
ISHxa1 is 94% (TnpB) aa similar to ISHmu7.
References
1] Pfeiffer F. (2013) Direct submission.
2] Anderson, I., Tindall, B.J., Rohde, M., Lucas, S., Han, J., Lapidus, A., Cheng, J.F., Goodwin, L., Pitluck, S., Peters, L., Pati, A., Mikhailova, N., Pagani, I., Teshima, H., Han, C., Tapia, R., Land, M., Woyke, T., Klenk, H.P., Kyrpides, N., Ivanova, N. Stand.(2012) Genomic Sci. 6: 31-42
2] Anderson, I., Tindall, B.J., Rohde, M., Lucas, S., Han, J., Lapidus, A., Cheng, J.F., Goodwin, L., Pitluck, S., Peters, L., Pati, A., Mikhailova, N., Pagani, I., Teshima, H., Han, C., Tapia, R., Land, M., Woyke, T., Klenk, H.P., Kyrpides, N., Ivanova, N. Stand.(2012) Genomic Sci. 6: 31-42