ISPa52
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KF682467 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 21/2010 |
DNA section
IS Length : 1190 bp
Ends
IR Length : 13/18
IRL : GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATACCCCGATCCTACC
IRR : GGATGGTCTGAAGTAGTCGAGTTTTTCTGACTGACTTCAGGCACTGCTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGGAAACCG | CCAG | TGCAGTGGCG | 4 |
DNA sequence
GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATACCCCGATCCTACCCGCCGAGTAGCCCGATGAAGCAGATGACTTTCTCCGACGCCGAGTACGCC
GGCAAGCGCAAGCAGACCCGCAAAGAGTCGTTCTTGATCGAAATGGATCGGGTAGTGCCATGGAAGGGTTTGGTTGCCTTGATCGAGCCCCACTACCCCA
AGGGTGAAGGCGGACGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTTCATTTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGGC
ACTGTACGAGACCACCATCCTGCGGCAGTTCGCGGGGCTGAGCCTGGAGCGTATCCCCGACGAAACCACCATCCTCAACTTCCGTCGCCTGCTGGAGAAA
CACGAACTGGCTGCTGGCATCCTGGCCGTGATCAATGGCTACCTGGGTGACCGTGGCCTGTCGCTGCGCCAAGGCACCATTGTCGATGCCACATTGATCA
ATGCACCGAGCTCGACCAAGAACAAGGACGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAGGGCAACCAGTATTACTTCGGGGCCAAGGCACACAT
AGGTGTCGACGATGAATCGGGTTTGGTGCACAGCGTGGTGGTCACGGCAGCCAATGTCGCGGATGTCACCCAGGTCGATAAGCTGCTGCACGGCGAGGAG
AACATGGTCGGCGCAGACGCCGGTTACACCGGCGTCGAGAAGCGTCCCGAACATGAAGGCCGCGAAGTCATCTGGCAGATCGCGGCCCGCCGCAGCACTT
ACAAGAAGCTGGATAAGCGCAGCGCGCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGCGCCAAGGTCGAGCACCCGTTCCGGGT
GATCAAGCGTCAGTTTGGCTACACCAAGGTGCGCTTCCGAGGCCTGGCGAAGAATACGTCGCAGATGGTTACGCTGTTTGCGCTATCGAATCTGTGGATG
GCTCGCCGACATTTACTGACCTCTGCAGGAGAGGTGCGCCTGTAATGCGAGGCATAGCCGCTGCGAGGTGCTCGCAGCGGCTCAAGCATCGAATTGAGCC
GGCGACTTGATCGTTTTTTGATCATTATCCCGCTTTAAAATCAGCAGTGCCTGAAGTCAGTCAGAAAAACTCGACTACTTCAGACCATCC
GGCAAGCGCAAGCAGACCCGCAAAGAGTCGTTCTTGATCGAAATGGATCGGGTAGTGCCATGGAAGGGTTTGGTTGCCTTGATCGAGCCCCACTACCCCA
AGGGTGAAGGCGGACGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTTCATTTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGGC
ACTGTACGAGACCACCATCCTGCGGCAGTTCGCGGGGCTGAGCCTGGAGCGTATCCCCGACGAAACCACCATCCTCAACTTCCGTCGCCTGCTGGAGAAA
CACGAACTGGCTGCTGGCATCCTGGCCGTGATCAATGGCTACCTGGGTGACCGTGGCCTGTCGCTGCGCCAAGGCACCATTGTCGATGCCACATTGATCA
ATGCACCGAGCTCGACCAAGAACAAGGACGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAGGGCAACCAGTATTACTTCGGGGCCAAGGCACACAT
AGGTGTCGACGATGAATCGGGTTTGGTGCACAGCGTGGTGGTCACGGCAGCCAATGTCGCGGATGTCACCCAGGTCGATAAGCTGCTGCACGGCGAGGAG
AACATGGTCGGCGCAGACGCCGGTTACACCGGCGTCGAGAAGCGTCCCGAACATGAAGGCCGCGAAGTCATCTGGCAGATCGCGGCCCGCCGCAGCACTT
ACAAGAAGCTGGATAAGCGCAGCGCGCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGCGCCAAGGTCGAGCACCCGTTCCGGGT
GATCAAGCGTCAGTTTGGCTACACCAAGGTGCGCTTCCGAGGCCTGGCGAAGAATACGTCGCAGATGGTTACGCTGTTTGCGCTATCGAATCTGTGGATG
GCTCGCCGACATTTACTGACCTCTGCAGGAGAGGTGCGCCTGTAATGCGAGGCATAGCCGCTGCGAGGTGCTCGCAGCGGCTCAAGCATCGAATTGAGCC
GGCGACTTGATCGTTTTTTGATCATTATCCCGCTTTAAAATCAGCAGTGCCTGAAGTCAGTCAGAAAAACTCGACTACTTCAGACCATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 65 | 1045 | + | No |
Chemistry : DDE
ORF sequence :
MKQMTFSDAEYAGKRKQTRKESFLIEMDRVVPWKGLVALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVAD
VTQVDKLLHGEENMVGADAGYTGVEKRPEHEGREVIWQIAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTSQ
MVTLFALSNLWMARRHLLTSAGEVRL
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVAD
VTQVDKLLHGEENMVGADAGYTGVEKRPEHEGREVIWQIAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTSQ
MVTLFALSNLWMARRHLLTSAGEVRL
Blast result :
Comments
ISPa52 is 98% aa similar to ISPre1.
References
1] Wolkowicz,T., Patzer,J.A. and Kaminska,W. (2013) Direct submission GenBank.