ISPa52

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KF682467 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 21/2010
DNA section
IS Length : 1190 bp

Ends


IR Length : 13/18

IRL : GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATACCCCGATCCTACC
IRR : GGATGGTCTGAAGTAGTCGAGTTTTTCTGACTGACTTCAGGCACTGCTGA

Insertion site


Left flankDirect repeatRight flankDR Length
GCGGAAACCGCCAGTGCAGTGGCG4

DNA sequence

GGAAACTCTGAAGAAGACTTCCTGATTTGGCAAAATACCCCGATCCTACCCGCCGAGTAGCCCGATGAAGCAGATGACTTTCTCCGACGCCGAGTACGCC
GGCAAGCGCAAGCAGACCCGCAAAGAGTCGTTCTTGATCGAAATGGATCGGGTAGTGCCATGGAAGGGTTTGGTTGCCTTGATCGAGCCCCACTACCCCA
AGGGTGAAGGCGGACGTCCGGCCTATCCGCTGATGGCGATGCTGCGGGTTCATTTGATGCAGAACTGGTTTGGCTACAGCGATCCGGCGATGGAAGAGGC
ACTGTACGAGACCACCATCCTGCGGCAGTTCGCGGGGCTGAGCCTGGAGCGTATCCCCGACGAAACCACCATCCTCAACTTCCGTCGCCTGCTGGAGAAA
CACGAACTGGCTGCTGGCATCCTGGCCGTGATCAATGGCTACCTGGGTGACCGTGGCCTGTCGCTGCGCCAAGGCACCATTGTCGATGCCACATTGATCA
ATGCACCGAGCTCGACCAAGAACAAGGACGGCAAACGCGACCCAGAGATGCATCAGACCAAGAAGGGCAACCAGTATTACTTCGGGGCCAAGGCACACAT
AGGTGTCGACGATGAATCGGGTTTGGTGCACAGCGTGGTGGTCACGGCAGCCAATGTCGCGGATGTCACCCAGGTCGATAAGCTGCTGCACGGCGAGGAG
AACATGGTCGGCGCAGACGCCGGTTACACCGGCGTCGAGAAGCGTCCCGAACATGAAGGCCGCGAAGTCATCTGGCAGATCGCGGCCCGCCGCAGCACTT
ACAAGAAGCTGGATAAGCGCAGCGCGCTGTACAAAGCCAAGCGCAAGATCGAGAAGGCCAAAGCCCAGGTGCGCGCCAAGGTCGAGCACCCGTTCCGGGT
GATCAAGCGTCAGTTTGGCTACACCAAGGTGCGCTTCCGAGGCCTGGCGAAGAATACGTCGCAGATGGTTACGCTGTTTGCGCTATCGAATCTGTGGATG
GCTCGCCGACATTTACTGACCTCTGCAGGAGAGGTGCGCCTGTAATGCGAGGCATAGCCGCTGCGAGGTGCTCGCAGCGGCTCAAGCATCGAATTGAGCC
GGCGACTTGATCGTTTTTTGATCATTATCCCGCTTTAAAATCAGCAGTGCCTGAAGTCAGTCAGAAAAACTCGACTACTTCAGACCATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa651045+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQMTFSDAEYAGKRKQTRKESFLIEMDRVVPWKGLVALIEPHYPKGEGGRPAYPLMAMLRVHLMQNWFGYSDPAMEEALYETTILRQFAGLSLERIPDE
TTILNFRRLLEKHELAAGILAVINGYLGDRGLSLRQGTIVDATLINAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVAD
VTQVDKLLHGEENMVGADAGYTGVEKRPEHEGREVIWQIAARRSTYKKLDKRSALYKAKRKIEKAKAQVRAKVEHPFRVIKRQFGYTKVRFRGLAKNTSQ
MVTLFALSNLWMARRHLLTSAGEVRL

 

Blast result :
Comments
ISPa52 is 98% aa similar to ISPre1.
References
1] Wolkowicz,T., Patzer,J.A. and Kaminska,W. (2013) Direct submission GenBank.