ISPa51
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KF682466 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa 39/2010 |
DNA section
IS Length : 1208 bp
Ends
IR Length : 13/15
IRL : GAGGCGCTGAACAAACCCCATCCCCGGCGCATATCTTGGTAAAATAGCCC
IRR : GAACCGCTGAACAAAGTCGCTCAAGCGAGCGAATTTATCAATTTTACAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCCTCACCA | CCTATG | AATCCGGCTT | 6 |
DNA sequence
GAGGCGCTGAACAAACCCCATCCCCGGCGCATATCTTGGTAAAATAGCCCAATTCGTCAAGACTGAGTCCGTACCCATGCAAATCACCTTCGCCGAAGCC
GAGTTCACCAGCAAAAAGAAGCAAACCCGTCGTGATCGCCTGTTGGCCGATCTGGAAAGCCTGGTGCCTTGGGCTGTTCTGGAGGCGGTGATTGAGCCGC
ACTATCCCAAAACAGACGGCAAACAAGGCCGGCCAGCCATGGGGCTTTCTCGGATGCTGCGCATGTACATCCTGCAACAGGTGATGGGGTTTTCCGATGA
AGGCACGGAGGATGCGGTCTATGACAGCGCGGCGATTCAGCTCTTTATGGGCATCGACCTTGGGCGTGATGCCGTGCCGGATGCAACCACCTTATTGCGC
TTTCGGCGACTGTTGGAAACTCACAATCTGACCCGGCAAATTTTTGCTGCAGTCAATTACCAGCTGGCGACTCAAGGGCTATACCTGAAGGAAGGCACGG
TCGTTGATGCCACCATCATTTCTGCGCCGCCTTCTATCAAAAACGAAAGCAAAAGCCGTGACCCTGAAATGCGTCACGCCAAGAAAGGTAACCAGTATTA
CTTTGGCATGAAAGCTCATATCGGCGTTGATGCGGCCAGCGGCCTGGTGCATACGATGGTTACGACTCCCGCGAACGCTCACGACGTCACCCAGGCGCAT
GCCTTGCTGCATGGCGAAGAGCAGGAGGTCTATGGTGACTCAGGGTATCAGGGCGTTGAGAAACGAGAAGAGAACAAGGGCAAAAAGGTAGACTGGGTGA
TTGCCATGCGTCACGGGAAGCGCCGCAAGCTGCGTGAAAGTGGTACAGAAGAAGGTCGACTTGTAGATAAAATCGAGCAGCTCAAGAGCCAGATTCGCGC
CAAGGTTGAGCATCCGTTTTATTGGGTCAAGGTGCACTTTGGCCATCGCAAGACGCGCTACCGTGGTCTGGCGAAAAATACCGCCCAGTTGTATAGCCTG
TTTGCTTTGGCGAACTTATTTTTGTCGAAGCGATGTATGTCGTTGGCGGGATAAATCCGCCTAAAACCCGGGATGCTGCCCGGAAAAGCAGCAAAAACGG
GTAAAACCGTTCAAAAATAGATGTTTTTATGACTCTGACGCTCGATTTTCAGAGCTGATTTGTAAAATTGATAAATTCGCTCGCTTGAGCGACTTTGTTC
AGCGGTTC
GAGTTCACCAGCAAAAAGAAGCAAACCCGTCGTGATCGCCTGTTGGCCGATCTGGAAAGCCTGGTGCCTTGGGCTGTTCTGGAGGCGGTGATTGAGCCGC
ACTATCCCAAAACAGACGGCAAACAAGGCCGGCCAGCCATGGGGCTTTCTCGGATGCTGCGCATGTACATCCTGCAACAGGTGATGGGGTTTTCCGATGA
AGGCACGGAGGATGCGGTCTATGACAGCGCGGCGATTCAGCTCTTTATGGGCATCGACCTTGGGCGTGATGCCGTGCCGGATGCAACCACCTTATTGCGC
TTTCGGCGACTGTTGGAAACTCACAATCTGACCCGGCAAATTTTTGCTGCAGTCAATTACCAGCTGGCGACTCAAGGGCTATACCTGAAGGAAGGCACGG
TCGTTGATGCCACCATCATTTCTGCGCCGCCTTCTATCAAAAACGAAAGCAAAAGCCGTGACCCTGAAATGCGTCACGCCAAGAAAGGTAACCAGTATTA
CTTTGGCATGAAAGCTCATATCGGCGTTGATGCGGCCAGCGGCCTGGTGCATACGATGGTTACGACTCCCGCGAACGCTCACGACGTCACCCAGGCGCAT
GCCTTGCTGCATGGCGAAGAGCAGGAGGTCTATGGTGACTCAGGGTATCAGGGCGTTGAGAAACGAGAAGAGAACAAGGGCAAAAAGGTAGACTGGGTGA
TTGCCATGCGTCACGGGAAGCGCCGCAAGCTGCGTGAAAGTGGTACAGAAGAAGGTCGACTTGTAGATAAAATCGAGCAGCTCAAGAGCCAGATTCGCGC
CAAGGTTGAGCATCCGTTTTATTGGGTCAAGGTGCACTTTGGCCATCGCAAGACGCGCTACCGTGGTCTGGCGAAAAATACCGCCCAGTTGTATAGCCTG
TTTGCTTTGGCGAACTTATTTTTGTCGAAGCGATGTATGTCGTTGGCGGGATAAATCCGCCTAAAACCCGGGATGCTGCCCGGAAAAGCAGCAAAAACGG
GTAAAACCGTTCAAAAATAGATGTTTTTATGACTCTGACGCTCGATTTTCAGAGCTGATTTGTAAAATTGATAAATTCGCTCGCTTGAGCGACTTTGTTC
AGCGGTTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 77 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MQITFAEAEFTSKKKQTRRDRLLADLESLVPWAVLEAVIEPHYPKTDGKQGRPAMGLSRMLRMYILQQVMGFSDEGTEDAVYDSAAIQLFMGIDLGRDAV
PDATTLLRFRRLLETHNLTRQIFAAVNYQLATQGLYLKEGTVVDATIISAPPSIKNESKSRDPEMRHAKKGNQYYFGMKAHIGVDAASGLVHTMVTTPAN
AHDVTQAHALLHGEEQEVYGDSGYQGVEKREENKGKKVDWVIAMRHGKRRKLRESGTEEGRLVDKIEQLKSQIRAKVEHPFYWVKVHFGHRKTRYRGLAK
NTAQLYSLFALANLFLSKRCMSLAG
PDATTLLRFRRLLETHNLTRQIFAAVNYQLATQGLYLKEGTVVDATIISAPPSIKNESKSRDPEMRHAKKGNQYYFGMKAHIGVDAASGLVHTMVTTPAN
AHDVTQAHALLHGEEQEVYGDSGYQGVEKREENKGKKVDWVIAMRHGKRRKLRESGTEEGRLVDKIEQLKSQIRAKVEHPFYWVKVHFGHRKTRYRGLAK
NTAQLYSLFALANLFLSKRCMSLAG
Blast result :
Comments
ISPa51 is 74% aa similar to ISPa9.
References
1] Wolkowicz,T., Patzer,J.A. and Kaminska,W. (2013) Direct submission GenBank.