ISPa51

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KF682466 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa 39/2010
DNA section
IS Length : 1208 bp

Ends


IR Length : 13/15

IRL : GAGGCGCTGAACAAACCCCATCCCCGGCGCATATCTTGGTAAAATAGCCC
IRR : GAACCGCTGAACAAAGTCGCTCAAGCGAGCGAATTTATCAATTTTACAAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCCTCACCACCTATGAATCCGGCTT6

DNA sequence

GAGGCGCTGAACAAACCCCATCCCCGGCGCATATCTTGGTAAAATAGCCCAATTCGTCAAGACTGAGTCCGTACCCATGCAAATCACCTTCGCCGAAGCC
GAGTTCACCAGCAAAAAGAAGCAAACCCGTCGTGATCGCCTGTTGGCCGATCTGGAAAGCCTGGTGCCTTGGGCTGTTCTGGAGGCGGTGATTGAGCCGC
ACTATCCCAAAACAGACGGCAAACAAGGCCGGCCAGCCATGGGGCTTTCTCGGATGCTGCGCATGTACATCCTGCAACAGGTGATGGGGTTTTCCGATGA
AGGCACGGAGGATGCGGTCTATGACAGCGCGGCGATTCAGCTCTTTATGGGCATCGACCTTGGGCGTGATGCCGTGCCGGATGCAACCACCTTATTGCGC
TTTCGGCGACTGTTGGAAACTCACAATCTGACCCGGCAAATTTTTGCTGCAGTCAATTACCAGCTGGCGACTCAAGGGCTATACCTGAAGGAAGGCACGG
TCGTTGATGCCACCATCATTTCTGCGCCGCCTTCTATCAAAAACGAAAGCAAAAGCCGTGACCCTGAAATGCGTCACGCCAAGAAAGGTAACCAGTATTA
CTTTGGCATGAAAGCTCATATCGGCGTTGATGCGGCCAGCGGCCTGGTGCATACGATGGTTACGACTCCCGCGAACGCTCACGACGTCACCCAGGCGCAT
GCCTTGCTGCATGGCGAAGAGCAGGAGGTCTATGGTGACTCAGGGTATCAGGGCGTTGAGAAACGAGAAGAGAACAAGGGCAAAAAGGTAGACTGGGTGA
TTGCCATGCGTCACGGGAAGCGCCGCAAGCTGCGTGAAAGTGGTACAGAAGAAGGTCGACTTGTAGATAAAATCGAGCAGCTCAAGAGCCAGATTCGCGC
CAAGGTTGAGCATCCGTTTTATTGGGTCAAGGTGCACTTTGGCCATCGCAAGACGCGCTACCGTGGTCTGGCGAAAAATACCGCCCAGTTGTATAGCCTG
TTTGCTTTGGCGAACTTATTTTTGTCGAAGCGATGTATGTCGTTGGCGGGATAAATCCGCCTAAAACCCGGGATGCTGCCCGGAAAAGCAGCAAAAACGG
GTAAAACCGTTCAAAAATAGATGTTTTTATGACTCTGACGCTCGATTTTCAGAGCTGATTTGTAAAATTGATAAATTCGCTCGCTTGAGCGACTTTGTTC
AGCGGTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa771054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQITFAEAEFTSKKKQTRRDRLLADLESLVPWAVLEAVIEPHYPKTDGKQGRPAMGLSRMLRMYILQQVMGFSDEGTEDAVYDSAAIQLFMGIDLGRDAV
PDATTLLRFRRLLETHNLTRQIFAAVNYQLATQGLYLKEGTVVDATIISAPPSIKNESKSRDPEMRHAKKGNQYYFGMKAHIGVDAASGLVHTMVTTPAN
AHDVTQAHALLHGEEQEVYGDSGYQGVEKREENKGKKVDWVIAMRHGKRRKLRESGTEEGRLVDKIEQLKSQIRAKVEHPFYWVKVHFGHRKTRYRGLAK
NTAQLYSLFALANLFLSKRCMSLAG

 

Blast result :
Comments
ISPa51 is 74% aa similar to ISPa9.
References
1] Wolkowicz,T., Patzer,J.A. and Kaminska,W. (2013) Direct submission GenBank.