ISHhu1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LN831302 | ND | Halobacterium hubeiense | Halobacterium hubeiense plasmid pSTJ001 Halobacterium hubeiense |
DNA section
IS Length : 1835 bp
Ends
Left end : GGAAAATTCAAGGCGAAAGCCTCGCCCTTCAGGGCGGGGATGAAGCCGACCAACAGTATTCAACCGCCGTCGATGGCATAGACGCGGTTCCAACACAATT II struct. : Yes
Right end : TCCTAAAGAAGTGCGCACAAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGAGGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TCAGGGGGCGTA | TTAC | TGGGTGTCGTTC | TCAA |
AGACTTTAATCG | TTAC | TCACTGACAAAT | TCAA |
DNA sequence
GGAAAATTCAAGGCGAAAGCCTCGCCCTTCAGGGCGGGGATGAAGCCGACCAACAGTATTCAACCGCCGTCGATGGCATAGACGCGGTTCCAACACAATT
TTTAACCGGTCCGACCATGATAGTATACATAGATGGTAAAGAGTACCCGTCACGCGAAATACGAACTCTATTACCACATAGTGTTCGTGCCGAAGTATCG
GCGTTCGCCCCTGACGGGGAAGACGAAGGACCGTCTCGAAACCATCTTCACGGAAATCTGTGAGGACAAAGACCTCGAACTGGCCGAGTCCGAGGTCATG
CCCGACCACGTACACCTGTTCATCGGGAGTCCACCGAAGAACGCCCCGTCACTCATCGTCAACTGGGTCAAGGGCATCTCGGCGCGGAAGTATAACCAGC
GATACGACGACCGCGTGAAGTGGACTCGTTCGTACTACGTCGGTACGGCGGGTAGTTCCTCGAAGGGCGCTGTCGAACAGTACATCGCTGAACAGGAAGG
TGGTGACGAATGAAGCGCGTCAACACCTTCGAGGTCGTGCCACAGACCGAGAACGACAAAGAGTGCCTTCTACGGCTACTCGACGCCTCCGCCTCCCTGT
GGAACGAACTCACCTACGAACGCCGTCAGAACTACTTCGGTGACGGCGACGTGTGGGACACCTCCGAGTACCGAGGACGCTACAACGGTGTCGTCGGAAG
CGCGACCGTTCAACAGGTCACGCGCAAGAACAGCGAAGCGTGGCGGTCGTTCTTCGCGCTCAAAGAGAACGGAGAGCATGCGAACCCACCGTCGTACTGG
GGCAACGAGGAGGATGGACGAGAACTCCGTACCTACATCCGAAACAACCAGTACACGATTCAGTGGGGCAAGCGTAGCCGTCTCGAACTCCCCGTTGGGC
AAGAGTTGAAAGACGAATACGGACTCGGCTACCACGAACGCCTCCGTCTCGAAGTCCGAGGCAACCCGAAGTGGGACGGCGAACAGGGTCGTCTGGAACT
TGAGTACGACGGGGTGAGCGACACGTTCAGGGCTTTCCAACCAGTCACAGTCCCTGATTCTCGACTGGATTCACCACTGGCTTCGGAAGAAGCCGCCCTC
GACGTTGGCGCAAACAACCTCGTCGCCTGTTCTACGACTACTGGGAACCAGTACCTCTACGACGGTCGGGAGTTGTTCGGACGGTTCCGTGAGACGACTG
ACGAAATCGCCCGCCTGCAGTCGAAACTCCGCGAGGGACGCTACAGTTCCAAGCGGATTCGACGGCTGTATCGACAGCGGACGAAGCGCCGTGACCACGC
ACAGAACGCGCTGGTGCGCGACCTCGTTGAACGGCTGTACGACGAGGGCGTGGCGACGGTGTACGTGGGCGATTTGACCGACGTGCTGGAAACGCACTGG
TCGGTCAGGGTGAACGAGAAGACGCACAACTTCTGGGCGTTCAAGAAGTTCATCCACCGTCTCGCGTGTGTCTGTGAGGAATACGGCATCAGCCTCGAAG
TCGAGTCGGAAGCGTGGACAAGTCAGACGTGTCCCGAGTGTGGCGACCACGAGGAGACGGTTCGCCATGAGGATACGCTGACGTGTCCGTGTGGGTTCGA
GGGACACGCAGACCTCACGGCGTCAGAGACGTTCCTTCGGGAAAACAGCGGTACGGAAGTCAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGAC
CACGATTGGTCGGGGAAACCACACCCTCACGAAAGTCCTAAAGAAGTGCGCACAAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGA
GGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA
TTTAACCGGTCCGACCATGATAGTATACATAGATGGTAAAGAGTACCCGTCACGCGAAATACGAACTCTATTACCACATAGTGTTCGTGCCGAAGTATCG
GCGTTCGCCCCTGACGGGGAAGACGAAGGACCGTCTCGAAACCATCTTCACGGAAATCTGTGAGGACAAAGACCTCGAACTGGCCGAGTCCGAGGTCATG
CCCGACCACGTACACCTGTTCATCGGGAGTCCACCGAAGAACGCCCCGTCACTCATCGTCAACTGGGTCAAGGGCATCTCGGCGCGGAAGTATAACCAGC
GATACGACGACCGCGTGAAGTGGACTCGTTCGTACTACGTCGGTACGGCGGGTAGTTCCTCGAAGGGCGCTGTCGAACAGTACATCGCTGAACAGGAAGG
TGGTGACGAATGAAGCGCGTCAACACCTTCGAGGTCGTGCCACAGACCGAGAACGACAAAGAGTGCCTTCTACGGCTACTCGACGCCTCCGCCTCCCTGT
GGAACGAACTCACCTACGAACGCCGTCAGAACTACTTCGGTGACGGCGACGTGTGGGACACCTCCGAGTACCGAGGACGCTACAACGGTGTCGTCGGAAG
CGCGACCGTTCAACAGGTCACGCGCAAGAACAGCGAAGCGTGGCGGTCGTTCTTCGCGCTCAAAGAGAACGGAGAGCATGCGAACCCACCGTCGTACTGG
GGCAACGAGGAGGATGGACGAGAACTCCGTACCTACATCCGAAACAACCAGTACACGATTCAGTGGGGCAAGCGTAGCCGTCTCGAACTCCCCGTTGGGC
AAGAGTTGAAAGACGAATACGGACTCGGCTACCACGAACGCCTCCGTCTCGAAGTCCGAGGCAACCCGAAGTGGGACGGCGAACAGGGTCGTCTGGAACT
TGAGTACGACGGGGTGAGCGACACGTTCAGGGCTTTCCAACCAGTCACAGTCCCTGATTCTCGACTGGATTCACCACTGGCTTCGGAAGAAGCCGCCCTC
GACGTTGGCGCAAACAACCTCGTCGCCTGTTCTACGACTACTGGGAACCAGTACCTCTACGACGGTCGGGAGTTGTTCGGACGGTTCCGTGAGACGACTG
ACGAAATCGCCCGCCTGCAGTCGAAACTCCGCGAGGGACGCTACAGTTCCAAGCGGATTCGACGGCTGTATCGACAGCGGACGAAGCGCCGTGACCACGC
ACAGAACGCGCTGGTGCGCGACCTCGTTGAACGGCTGTACGACGAGGGCGTGGCGACGGTGTACGTGGGCGATTTGACCGACGTGCTGGAAACGCACTGG
TCGGTCAGGGTGAACGAGAAGACGCACAACTTCTGGGCGTTCAAGAAGTTCATCCACCGTCTCGCGTGTGTCTGTGAGGAATACGGCATCAGCCTCGAAG
TCGAGTCGGAAGCGTGGACAAGTCAGACGTGTCCCGAGTGTGGCGACCACGAGGAGACGGTTCGCCATGAGGATACGCTGACGTGTCCGTGTGGGTTCGA
GGGACACGCAGACCTCACGGCGTCAGAGACGTTCCTTCGGGAAAACAGCGGTACGGAAGTCAGGCCGATGGCACGGCCCGTGCGATTCGAGTGGGACGAC
CACGATTGGTCGGGGAAACCACACCCTCACGAAAGTCCTAAAGAAGTGCGCACAAACCCGCAAGTTGCCTCCGTGGGTCGGTAGCCGAACCCCCAACGGA
GGAATCCTCGCGCTTTAGCGCGGGGAGGATGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
381 bp | 126 aa | 133 | 513 | + | No |
Chemistry : Y1
ORF sequence :
MVKSTRHAKYELYYHIVFVPKYRRSPLTGKTKDRLETIFTEICEDKDLELAESEVMPDHVHLFIGSPPKNAPSLIVNWVKGISARKYNQRYDDRVKWTRS
YYVGTAGSSSKGAVEQYIAEQEGGDE
YYVGTAGSSSKGAVEQYIAEQEGGDE
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1275 bp | 424 aa | 510 | 1784 | + | No |
AG : TnpB
ORF sequence :
MKRVNTFEVVPQTENDKECLLRLLDASASLWNELTYERRQNYFGDGDVWDTSEYRGRYNGVVGSATVQQVTRKNSEAWRSFFALKENGEHANPPSYWGNE
EDGRELRTYIRNNQYTIQWGKRSRLELPVGQELKDEYGLGYHERLRLEVRGNPKWDGEQGRLELEYDGVSDTFRAFQPVTVPDSRLDSPLASEEAALDVG
ANNLVACSTTTGNQYLYDGRELFGRFRETTDEIARLQSKLREGRYSSKRIRRLYRQRTKRRDHAQNALVRDLVERLYDEGVATVYVGDLTDVLETHWSVR
VNEKTHNFWAFKKFIHRLACVCEEYGISLEVESEAWTSQTCPECGDHEETVRHEDTLTCPCGFEGHADLTASETFLRENSGTEVRPMARPVRFEWDDHDW
SGKPHPHESPKEVRTNPQVASVGR
EDGRELRTYIRNNQYTIQWGKRSRLELPVGQELKDEYGLGYHERLRLEVRGNPKWDGEQGRLELEYDGVSDTFRAFQPVTVPDSRLDSPLASEEAALDVG
ANNLVACSTTTGNQYLYDGRELFGRFRETTDEIARLQSKLREGRYSSKRIRRLYRQRTKRRDHAQNALVRDLVERLYDEGVATVYVGDLTDVLETHWSVR
VNEKTHNFWAFKKFIHRLACVCEEYGISLEVESEAWTSQTCPECGDHEETVRHEDTLTCPCGFEGHADLTASETFLRENSGTEVRPMARPVRFEWDDHDW
SGKPHPHESPKEVRTNPQVASVGR
Blast result :
Comments
ISHhu1 is 67% (TnpA : the transposase) aa similar to ISNpe10 and 80% (TnpB) aa similar to ISNpe11.
References
1] F. Pfeiffer (2013) Direct submission.
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130
2] Jaakkola S.T., Pfeiffer F., Ravantti J.J., Guo Q., Liu Y., Chen X., Ma H., Yang C., Oksanen H.M., Bamford D.H. (2015) Environ Microbiol. doi: 10.1111/1462-2920.13130