ISPsesp1

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
BADY01000112 ND Pseudoalteromonas sp.
Pseudoalteromonas sp. BSi20495
DNA section
IS Length : 1202 bp

Ends


IR Length : 21/24

IRL : CAGGGCGGGATCACACTTTGTAAATAAACAAATTTTATGATCTAATACCA
IRR : CAGGGCGCGAGCATACTTTGTTAAAATTGTTAACCAAAAAGAAGTTCTTC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CAGGGCGGGATCACACTTTGTAAATAAACAAATTTTATGATCTAATACCATAAATTTCATCACCTTAAACTTATTATGTCACTCTTCTCACATTTAGAAC
TCGTCAAAGATAATCGTTCACATATAAATCAGCACCATAACTTAGTTGATGTGCTTTTTCTTATTATTACTGCCGTTACATCAGGGTGTGAAAGCTGGCA
AGGTATTGAAATCTATGGAGAAAGTAAGCTTAATTGGTTAAGAGGATTTCGTTCTTTCAAAAATGGCATACCCACTCGACATAGTATTGCTCGGATTTTT
AGAACCGTTGATACTGACTCATTACTACTCGCGATGTATAGCTGGGTCAATCAAAACCGCGTTAAGTCAGCGCATCCTGTCATTGCCTTCGATGGCAAAA
CTATTCGCGGAGCAAGTAAACACATTGCTGATAAATTACATCTCGTCTCAGCATTTGATTGTGAAGCAGGTCTCACATTATTCCACCAAACAGTTGGCAG
TAAGACGAATGAAATACCGGCAGTTCGGGATTTATTGAAAATACTCGATATCAATAACACCGTCATTACACTTGATGCTTTGCACTGCCAAAAAGAAACG
CTAAAACAGCTAATTAGCAGACATGCAGATTATCTAGTGCAAGCAAAGGGTAATCAAAAGAAACTTTATAGCGCGATTCAAGATGCATTTACACACCAGT
ATGAATCTGAAAACTCAGAGATACTTAGTCATGTAACACAAGATGAAGGGCATGGGCGAAAAGAAGTACGCACGATAGATTGTCTTGATGCGCGTTTATT
ACCGAGTGAAATTAAAGAGAGCTGGCCATCAGTTAGGACAATCGTTGCGGTGCAACGAGAGCGAACGAAGGGTAATAGAACGAGTATTGACACACATTAC
TACCTAACATCGTTGACAGACAATATATTGATAAATAAAGCAATAAGACAACATTGGCTGATAGAAAATCAGCAACACTGGATACTGGATGTCGTATTTA
AAGAAGATGCCTGTCAAATACATGAGCCATTAAGTGCGCAACATATGGCACTATTTAGACGCGTCGTTAGGAACATGATAAAGCAGCATACGAAAAGCAA
GGGGTCAATAAGAAGTAAGTGTGTAAGAGCTTGTTATGATGATGCTTTTAGAGAAGAACTTCTTTTTGGTTAACAATTTTAACAAAGTATGCTCGCGCCC
TG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1098 bp365 aa761173+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSLFSHLELVKDNRSHINQHHNLVDVLFLIITAVTSGCESWQGIEIYGESKLNWLRGFRSFKNGIPTRHSIARIFRTVDTDSLLLAMYSWVNQNRVKSAH
PVIAFDGKTIRGASKHIADKLHLVSAFDCEAGLTLFHQTVGSKTNEIPAVRDLLKILDINNTVITLDALHCQKETLKQLISRHADYLVQAKGNQKKLYSA
IQDAFTHQYESENSEILSHVTQDEGHGRKEVRTIDCLDARLLPSEIKESWPSVRTIVAVQRERTKGNRTSIDTHYYLTSLTDNILINKAIRQHWLIENQQ
HWILDVVFKEDACQIHEPLSAQHMALFRRVVRNMIKQHTKSKGSIRSKCVRACYDDAFREELLFG

 

Blast result :
Comments
ISPsesp1 is 69% aa similar to ISSba1.
References
1] ISfinder annotation (2013)
2] Xie,B.B., Qin,Q.L., Bian,F., Shu,Y.L. and Zhang,Y.Z.(2011)Direct GenBank submission.