ISPsesp1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
BADY01000112 | ND | Pseudoalteromonas sp. | Pseudoalteromonas sp. BSi20495 |
DNA section
IS Length : 1202 bp
Ends
IR Length : 21/24
IRL : CAGGGCGGGATCACACTTTGTAAATAAACAAATTTTATGATCTAATACCA
IRR : CAGGGCGCGAGCATACTTTGTTAAAATTGTTAACCAAAAAGAAGTTCTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
CAGGGCGGGATCACACTTTGTAAATAAACAAATTTTATGATCTAATACCATAAATTTCATCACCTTAAACTTATTATGTCACTCTTCTCACATTTAGAAC
TCGTCAAAGATAATCGTTCACATATAAATCAGCACCATAACTTAGTTGATGTGCTTTTTCTTATTATTACTGCCGTTACATCAGGGTGTGAAAGCTGGCA
AGGTATTGAAATCTATGGAGAAAGTAAGCTTAATTGGTTAAGAGGATTTCGTTCTTTCAAAAATGGCATACCCACTCGACATAGTATTGCTCGGATTTTT
AGAACCGTTGATACTGACTCATTACTACTCGCGATGTATAGCTGGGTCAATCAAAACCGCGTTAAGTCAGCGCATCCTGTCATTGCCTTCGATGGCAAAA
CTATTCGCGGAGCAAGTAAACACATTGCTGATAAATTACATCTCGTCTCAGCATTTGATTGTGAAGCAGGTCTCACATTATTCCACCAAACAGTTGGCAG
TAAGACGAATGAAATACCGGCAGTTCGGGATTTATTGAAAATACTCGATATCAATAACACCGTCATTACACTTGATGCTTTGCACTGCCAAAAAGAAACG
CTAAAACAGCTAATTAGCAGACATGCAGATTATCTAGTGCAAGCAAAGGGTAATCAAAAGAAACTTTATAGCGCGATTCAAGATGCATTTACACACCAGT
ATGAATCTGAAAACTCAGAGATACTTAGTCATGTAACACAAGATGAAGGGCATGGGCGAAAAGAAGTACGCACGATAGATTGTCTTGATGCGCGTTTATT
ACCGAGTGAAATTAAAGAGAGCTGGCCATCAGTTAGGACAATCGTTGCGGTGCAACGAGAGCGAACGAAGGGTAATAGAACGAGTATTGACACACATTAC
TACCTAACATCGTTGACAGACAATATATTGATAAATAAAGCAATAAGACAACATTGGCTGATAGAAAATCAGCAACACTGGATACTGGATGTCGTATTTA
AAGAAGATGCCTGTCAAATACATGAGCCATTAAGTGCGCAACATATGGCACTATTTAGACGCGTCGTTAGGAACATGATAAAGCAGCATACGAAAAGCAA
GGGGTCAATAAGAAGTAAGTGTGTAAGAGCTTGTTATGATGATGCTTTTAGAGAAGAACTTCTTTTTGGTTAACAATTTTAACAAAGTATGCTCGCGCCC
TG
TCGTCAAAGATAATCGTTCACATATAAATCAGCACCATAACTTAGTTGATGTGCTTTTTCTTATTATTACTGCCGTTACATCAGGGTGTGAAAGCTGGCA
AGGTATTGAAATCTATGGAGAAAGTAAGCTTAATTGGTTAAGAGGATTTCGTTCTTTCAAAAATGGCATACCCACTCGACATAGTATTGCTCGGATTTTT
AGAACCGTTGATACTGACTCATTACTACTCGCGATGTATAGCTGGGTCAATCAAAACCGCGTTAAGTCAGCGCATCCTGTCATTGCCTTCGATGGCAAAA
CTATTCGCGGAGCAAGTAAACACATTGCTGATAAATTACATCTCGTCTCAGCATTTGATTGTGAAGCAGGTCTCACATTATTCCACCAAACAGTTGGCAG
TAAGACGAATGAAATACCGGCAGTTCGGGATTTATTGAAAATACTCGATATCAATAACACCGTCATTACACTTGATGCTTTGCACTGCCAAAAAGAAACG
CTAAAACAGCTAATTAGCAGACATGCAGATTATCTAGTGCAAGCAAAGGGTAATCAAAAGAAACTTTATAGCGCGATTCAAGATGCATTTACACACCAGT
ATGAATCTGAAAACTCAGAGATACTTAGTCATGTAACACAAGATGAAGGGCATGGGCGAAAAGAAGTACGCACGATAGATTGTCTTGATGCGCGTTTATT
ACCGAGTGAAATTAAAGAGAGCTGGCCATCAGTTAGGACAATCGTTGCGGTGCAACGAGAGCGAACGAAGGGTAATAGAACGAGTATTGACACACATTAC
TACCTAACATCGTTGACAGACAATATATTGATAAATAAAGCAATAAGACAACATTGGCTGATAGAAAATCAGCAACACTGGATACTGGATGTCGTATTTA
AAGAAGATGCCTGTCAAATACATGAGCCATTAAGTGCGCAACATATGGCACTATTTAGACGCGTCGTTAGGAACATGATAAAGCAGCATACGAAAAGCAA
GGGGTCAATAAGAAGTAAGTGTGTAAGAGCTTGTTATGATGATGCTTTTAGAGAAGAACTTCTTTTTGGTTAACAATTTTAACAAAGTATGCTCGCGCCC
TG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1098 bp | 365 aa | 76 | 1173 | + | No |
Chemistry : Unknow
ORF sequence :
MSLFSHLELVKDNRSHINQHHNLVDVLFLIITAVTSGCESWQGIEIYGESKLNWLRGFRSFKNGIPTRHSIARIFRTVDTDSLLLAMYSWVNQNRVKSAH
PVIAFDGKTIRGASKHIADKLHLVSAFDCEAGLTLFHQTVGSKTNEIPAVRDLLKILDINNTVITLDALHCQKETLKQLISRHADYLVQAKGNQKKLYSA
IQDAFTHQYESENSEILSHVTQDEGHGRKEVRTIDCLDARLLPSEIKESWPSVRTIVAVQRERTKGNRTSIDTHYYLTSLTDNILINKAIRQHWLIENQQ
HWILDVVFKEDACQIHEPLSAQHMALFRRVVRNMIKQHTKSKGSIRSKCVRACYDDAFREELLFG
PVIAFDGKTIRGASKHIADKLHLVSAFDCEAGLTLFHQTVGSKTNEIPAVRDLLKILDINNTVITLDALHCQKETLKQLISRHADYLVQAKGNQKKLYSA
IQDAFTHQYESENSEILSHVTQDEGHGRKEVRTIDCLDARLLPSEIKESWPSVRTIVAVQRERTKGNRTSIDTHYYLTSLTDNILINKAIRQHWLIENQQ
HWILDVVFKEDACQIHEPLSAQHMALFRRVVRNMIKQHTKSKGSIRSKCVRACYDDAFREELLFG
Blast result :
Comments
ISPsesp1 is 69% aa similar to ISSba1.
References
1] ISfinder annotation (2013)
2] Xie,B.B., Qin,Q.L., Bian,F., Shu,Y.L. and Zhang,Y.Z.(2011)Direct GenBank submission.
2] Xie,B.B., Qin,Q.L., Bian,F., Shu,Y.L. and Zhang,Y.Z.(2011)Direct GenBank submission.