ISVa6

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_LK021130 ND Vibrio anguillarum
Vibrio anguillarum NB10
Vibrio anguillarum O1
DNA section
IS Length : 1091 bp

Ends


IR Length : 22/27

IRL : CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTGAGA
IRR : CTTAGTATCAAGTTTGAAGTGCGACACTTTCTACAGATGCGCATGAATAT

Insertion site


Left flankDirect repeatRight flankDR Length
GATTGTTATGTATCTTACACCAG3
CTTTGTTAGCTTTTTTGAGGTGC3
GATTGTTATACCCGTACTGTATT3
CTTTGTTATGTTTAGCTTTTTAC3

DNA sequence

CTTGGATTCAAGTACGAAGTGCGACACCTCTGAACATAAAAACAGTGAGATGCGATAATCATGAAGTTTGCTCCCGCCAAGAAGTAAAAAACATGAGATA
CACGCACCTCACTGAGAACGAAAGGTATATGATTTCTGCACTCAGAAAGCAAGGAATTAGTACCGCTAAAATAGCTAAACAACTGGGTCGTCACAAAGCT
ACTATCTATCGAGAAATTGAACGCAATTCCCGATACAACAGACACTTTAAAAGGTACTCCTATCAGGCGTGGAGAGCCCAACAAATGGCTCGCAACCGGC
TGAGTCGCTCGCGCAGAAATAAGCGCTACAGCGAAATCGACTTCAGGTTACCTGAAGCCTTGCTACGACTGGATTGGAGCCCTGACCAAATCGTCGGATA
CCTAAGAGTAAGAGGCTATCCAACAATGAGTCACGAGCTCATTTATCAGCATATTTGGAACGACAAAACTCTCGGTGGAACACTATGGAAACACCTACGC
CAATCCACTAAGAAAAGGCGTAAAAGGTATAACTCAAAAGACAGCCGAGGTCGGCTGGCAGCAAAGCGTCATATTACCGAAAGACCTGCAAAAGCTGAGC
ATCGAAAAGAGCCTGGTCACTGGGAGATTGATACCGTCGTTGGCCGCGGAACCAAGCACTGTATCGTGACTTTAGTTGACAGAATGACTGGCTACACTTT
TATTGGGCAAATGGACGATAGAACAAGCGAGTCGCTCAACGTAAGAATGAGCAAAATCATGACCCGCTCTGACTTACCTTTTAAGACGATAACTGCGGAT
AACGGCACTGAATTTCATGGTTATGCACAACTAGAAAAACATCATAACTGTCTGTTTTACTTTGCAAATCCATACCACTCATGGGAGCGAGGGACTAATG
AAAACACCAATGGTTTGATACGACAATACTTACCAAAACGAACTTCTATGTCACACGTGACACAGAAGCTCTGCAATGAAATTGCACACAAATTAAATAC
GCGCCCACGCAAAAGACTTGGGTATAGGACACCAACGGAGTATATTCATGCGCATCTGTAGAAAGTGTCGCACTTCAAACTTGATACTAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa931061+No
ORF function : Transposase
Description :

ORF sequence :

MRYTHLTENERYMISALRKQGISTAKIAKQLGRHKATIYREIERNSRYNRHFKRYSYQAWRAQQMARNRLSRSRRNKRYSEIDFRLPEALLRLDWSPDQI
VGYLRVRGYPTMSHELIYQHIWNDKTLGGTLWKHLRQSTKKRRKRYNSKDSRGRLAAKRHITERPAKAEHRKEPGHWEIDTVVGRGTKHCIVTLVDRMTG
YTFIGQMDDRTSESLNVRMSKIMTRSDLPFKTITADNGTEFHGYAQLEKHHNCLFYFANPYHSWERGTNENTNGLIRQYLPKRTSMSHVTQKLCNEIAHK
LNTRPRKRLGYRTPTEYIHAHL

 

Blast result :
Comments
ISVa6 is 57% aa similar to ISAeca1.
References