ISPsma1
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF953351 | ND | Psychrobacter maritimus | Psychrobacter arcticus 273-4 Psychrobacter sp. 1501 Psychrobacter maritimus MR29-12, plasmid pKLH80 Psychrobacter cryohalolentis K5, plasmid 1 |
DNA section
IS Length : 983 bp
Ends
IR Length : 20/21
IRL : ACCCCACTCTCAACTTCGAAAGTGATTGAAAAAAGAAGAGCACCTCACTA
IRR : ACCCCACTCTCAACTTGAAATAAGCAAATCAAACTGAAGAGGCGGATTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACAAGTAT | TTTAAATATT | 0 | |
TCTTTTTTGT | TAATTACT | GTAAGTAATT | 8 |
TTTGATGTAT | TTAAAAT | GTTAATATTA | 7 |
TGGATTTACC | AGTAAAT | AGTAATTTGA | 7 |
AAATACTTAT | ATTCAAT | CCTTCTCTAA | 7 |
AATAAAGGGT | ATAAATA | GTTATTTAAT | 7 |
AAGATTTTAT | TAa/tTTAA | GCTCTAAAGT | 9 |
AAAGACTTAA | TACAATAT | GTAAATGCGT | 8 |
ATATTCTTAA | TTCATATT | CTTAATTCAT | 8 |
GTCTTTTTAC | TTTTAAA | CTGAGTGTTT | 7 |
AGGCAATGAC | CTATTTA | ATAAAGTGTT | 7 |
ACTATCTTAT | AAGATAT | AGGCAATTCA | 7 |
ATAATTATCT | AAGCTT | ATCGTTAATT | 6 |
DNA sequence
ACCCCACTCTCAACTTCGAAAGTGATTGAAAAAAGAAGAGCACCTCACTAATCTATTGTTTTCGACCAAGAATACAATGGAGTTGTGAGATGCCCATAGA
CGAATTTATCATCAATATCTATTTAATGGTAGAGCAATATTACAAAATAGTCGTCACCAAACCCTTGCGAAGTGCAGGTTACGCGCCAAAGTTGAGTGAT
CCTGAGGTTATTTGCATGGAGATGGTCGGTGAATTTTTACACCTTGATCAAGACAAACAAATTTGGCAATACTTTACCCAGCATTGGCAAGACTGGTTTC
CAGCCATCGGCTCATACCCTAACTTCGCAAAGCACTGCGCCAATCTGTGGCAAGTCAAACAGCAGATACAAGATAAAGTCAGTCAAATTGAAGGCCGTGA
CAACATTCATTTTATGGATGGCTTTCCGATACCCGTCTGTCATTATGGACGCGCTTATCGGCATAAAAACTATCAAGACTTAGCAGCTTTTAGTTACTGC
GCCGCTAAGCAAGAGAGATACTATGGCTTTGAGGGACATTTGCTTGTTAATTTATCTGGCATGATTAAAGGCTTTACCGTTGCCCCTGCCAATGTTGATG
AAAGAGCGGTTGCGCCTGATATTACTGACCATATCCATGGTTTGCTCGGCGCTGATAAAGGGTATATCAGCCCGAGTCTGACATCGTACTACGACGCTCA
AGGAGTAGATTTACAAACGCCACTCAGAGCCAACATGAAAGAGGATAGACCCAAACCTGTGGTAAGACGGCTAATGAAAGCCCGCCGTATCGTTGAAACA
GTCATTGGTCAGCTATCAGAACGATTTAATATACAAAGAGTGCGAGCAAGAGATTTATGGCATTTGTCTCATCGATTGATTCGTAAGATTCTTTCACACA
ACTCTGCTGCTTTGATACTCAACAAAAAACTTGGTAATCCGCCTCTTCAGTTTGATTTGCTTATTTCAAGTTGAGAGTGGGGT
CGAATTTATCATCAATATCTATTTAATGGTAGAGCAATATTACAAAATAGTCGTCACCAAACCCTTGCGAAGTGCAGGTTACGCGCCAAAGTTGAGTGAT
CCTGAGGTTATTTGCATGGAGATGGTCGGTGAATTTTTACACCTTGATCAAGACAAACAAATTTGGCAATACTTTACCCAGCATTGGCAAGACTGGTTTC
CAGCCATCGGCTCATACCCTAACTTCGCAAAGCACTGCGCCAATCTGTGGCAAGTCAAACAGCAGATACAAGATAAAGTCAGTCAAATTGAAGGCCGTGA
CAACATTCATTTTATGGATGGCTTTCCGATACCCGTCTGTCATTATGGACGCGCTTATCGGCATAAAAACTATCAAGACTTAGCAGCTTTTAGTTACTGC
GCCGCTAAGCAAGAGAGATACTATGGCTTTGAGGGACATTTGCTTGTTAATTTATCTGGCATGATTAAAGGCTTTACCGTTGCCCCTGCCAATGTTGATG
AAAGAGCGGTTGCGCCTGATATTACTGACCATATCCATGGTTTGCTCGGCGCTGATAAAGGGTATATCAGCCCGAGTCTGACATCGTACTACGACGCTCA
AGGAGTAGATTTACAAACGCCACTCAGAGCCAACATGAAAGAGGATAGACCCAAACCTGTGGTAAGACGGCTAATGAAAGCCCGCCGTATCGTTGAAACA
GTCATTGGTCAGCTATCAGAACGATTTAATATACAAAGAGTGCGAGCAAGAGATTTATGGCATTTGTCTCATCGATTGATTCGTAAGATTCTTTCACACA
ACTCTGCTGCTTTGATACTCAACAAAAAACTTGGTAATCCGCCTCTTCAGTTTGATTTGCTTATTTCAAGTTGAGAGTGGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 90 | 974 | + | No |
Chemistry : DDE
ORF sequence :
MPIDEFIINIYLMVEQYYKIVVTKPLRSAGYAPKLSDPEVICMEMVGEFLHLDQDKQIWQYFTQHWQDWFPAIGSYPNFAKHCANLWQVKQQIQDKVSQI
EGRDNIHFMDGFPIPVCHYGRAYRHKNYQDLAAFSYCAAKQERYYGFEGHLLVNLSGMIKGFTVAPANVDERAVAPDITDHIHGLLGADKGYISPSLTSY
YDAQGVDLQTPLRANMKEDRPKPVVRRLMKARRIVETVIGQLSERFNIQRVRARDLWHLSHRLIRKILSHNSAALILNKKLGNPPLQFDLLISS
EGRDNIHFMDGFPIPVCHYGRAYRHKNYQDLAAFSYCAAKQERYYGFEGHLLVNLSGMIKGFTVAPANVDERAVAPDITDHIHGLLGADKGYISPSLTSY
YDAQGVDLQTPLRANMKEDRPKPVVRRLMKARRIVETVIGQLSERFNIQRVRARDLWHLSHRLIRKILSHNSAALILNKKLGNPPLQFDLLISS
Blast result :
Comments
ISPsma1 is 80% aa similar to ISAba9.
Direct repeats were identified in all hosts other than the original.
Direct repeats were identified in all hosts other than the original.
References
1] Kurakov A. (2013) Direct submission to ISfinder