ISPsma1

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF953351 ND Psychrobacter maritimus
Psychrobacter arcticus 273-4
Psychrobacter sp. 1501
Psychrobacter maritimus MR29-12, plasmid pKLH80
Psychrobacter cryohalolentis K5, plasmid 1
DNA section
IS Length : 983 bp

Ends


IR Length : 20/21

IRL : ACCCCACTCTCAACTTCGAAAGTGATTGAAAAAAGAAGAGCACCTCACTA
IRR : ACCCCACTCTCAACTTGAAATAAGCAAATCAAACTGAAGAGGCGGATTAC

Insertion site


Left flankDirect repeatRight flankDR Length
TAACAAGTATTTTAAATATT0
TCTTTTTTGTTAATTACTGTAAGTAATT8
TTTGATGTATTTAAAATGTTAATATTA7
TGGATTTACCAGTAAATAGTAATTTGA7
AAATACTTATATTCAATCCTTCTCTAA7
AATAAAGGGTATAAATAGTTATTTAAT7
AAGATTTTATTAa/tTTAAGCTCTAAAGT9
AAAGACTTAATACAATATGTAAATGCGT8
ATATTCTTAATTCATATTCTTAATTCAT8
GTCTTTTTACTTTTAAACTGAGTGTTT7
AGGCAATGACCTATTTAATAAAGTGTT7
ACTATCTTATAAGATATAGGCAATTCA7
ATAATTATCTAAGCTTATCGTTAATT6

DNA sequence

ACCCCACTCTCAACTTCGAAAGTGATTGAAAAAAGAAGAGCACCTCACTAATCTATTGTTTTCGACCAAGAATACAATGGAGTTGTGAGATGCCCATAGA
CGAATTTATCATCAATATCTATTTAATGGTAGAGCAATATTACAAAATAGTCGTCACCAAACCCTTGCGAAGTGCAGGTTACGCGCCAAAGTTGAGTGAT
CCTGAGGTTATTTGCATGGAGATGGTCGGTGAATTTTTACACCTTGATCAAGACAAACAAATTTGGCAATACTTTACCCAGCATTGGCAAGACTGGTTTC
CAGCCATCGGCTCATACCCTAACTTCGCAAAGCACTGCGCCAATCTGTGGCAAGTCAAACAGCAGATACAAGATAAAGTCAGTCAAATTGAAGGCCGTGA
CAACATTCATTTTATGGATGGCTTTCCGATACCCGTCTGTCATTATGGACGCGCTTATCGGCATAAAAACTATCAAGACTTAGCAGCTTTTAGTTACTGC
GCCGCTAAGCAAGAGAGATACTATGGCTTTGAGGGACATTTGCTTGTTAATTTATCTGGCATGATTAAAGGCTTTACCGTTGCCCCTGCCAATGTTGATG
AAAGAGCGGTTGCGCCTGATATTACTGACCATATCCATGGTTTGCTCGGCGCTGATAAAGGGTATATCAGCCCGAGTCTGACATCGTACTACGACGCTCA
AGGAGTAGATTTACAAACGCCACTCAGAGCCAACATGAAAGAGGATAGACCCAAACCTGTGGTAAGACGGCTAATGAAAGCCCGCCGTATCGTTGAAACA
GTCATTGGTCAGCTATCAGAACGATTTAATATACAAAGAGTGCGAGCAAGAGATTTATGGCATTTGTCTCATCGATTGATTCGTAAGATTCTTTCACACA
ACTCTGCTGCTTTGATACTCAACAAAAAACTTGGTAATCCGCCTCTTCAGTTTGATTTGCTTATTTCAAGTTGAGAGTGGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa90974+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIDEFIINIYLMVEQYYKIVVTKPLRSAGYAPKLSDPEVICMEMVGEFLHLDQDKQIWQYFTQHWQDWFPAIGSYPNFAKHCANLWQVKQQIQDKVSQI
EGRDNIHFMDGFPIPVCHYGRAYRHKNYQDLAAFSYCAAKQERYYGFEGHLLVNLSGMIKGFTVAPANVDERAVAPDITDHIHGLLGADKGYISPSLTSY
YDAQGVDLQTPLRANMKEDRPKPVVRRLMKARRIVETVIGQLSERFNIQRVRARDLWHLSHRLIRKILSHNSAALILNKKLGNPPLQFDLLISS

 

Blast result :
Comments
ISPsma1 is 80% aa similar to ISAba9.
Direct repeats were identified in all hosts other than the original.
References
1] Kurakov A. (2013) Direct submission to ISfinder