ISHmu4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001688 | ND | Halomicrobium mukohataei | Halomicrobium mukohataei DSM 12286 |
DNA section
IS Length : 1616 bp
Ends
Left end : CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCAGGCGTGAATCGCGTAAGCTCTGTGAGACAATCTTTGTGATTGTTGCCGACTGAATACGTAACATA II struct. : Yes
Right end : ACCGGTATTCCCATGTAGGGAAGCCGCGCCGTCATCGGGCTACGCCCGACTGCTTGAGGGATCTTCGATCCCTCTCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GACGCCTCGGCG | CGAT | CTCGGTGCCGTC | tcac |
DNA sequence
CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCAGGCGTGAATCGCGTAAGCTCTGTGAGACAATCTTTGTGATTGTTGCCGACTGAATACGTAACATA
AGTATTTAGTGGGACAAAAATGTACAAATTCTTGTGCGAACAGAGATAGATGTGGAGCGCGGTGGCGACCTGCATGAGCGGATCAAAGAGTACGCTCGTG
AGAATGGTATCCGCCATCCGCGTGCTTACCGTGAGCTCATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCCACGCTTGTCC
CGCCGACAGCACACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGGGAGGGGCTTCACGAGGCGTTCGACGCCAGGTGTGACACGATGAGCGC
AACCAGCGATGTGGTGACGCCTTACGACCTGCCGTATCAGGCGAAAGCGGCGCTGTGCAACTACGTCCCGCAACTTCACAACACCTACGACGCTCAAGAG
TTAGACGATGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGTGACTACGAGTTTACGTGGTGGGCACCACAACCCG
GTCGTGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAGGAGGATCTGTGGCACGACCTCGTAGATGGGAACGCTTCGGCAGGCCAACTCCG
CCTGCAACGGAACCGCACATCGTGGACGTTACACGTCACTGTCGAGTTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCACATC
GGTCTGGATATTGGTGAAACTGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTGCGAAGCATC
TCCGCAAAGAGATGCACACCACCCTGAAACGACTCCAAGAGCGAGACGCCGTCGAGTGGCGGATTGACGAGCGATTCAACCACTACCAGAACGCGCTTAC
CGATATTGTCGAGAAGGCGTCTCGGCAGGCCGTCGAGTACGCCCGGCAATTCGAGAAGCCGGTGCTGGTAATGGAGAACCTGACGTACATCCGCGAAGAA
TTGGACTACGGTTCGTACATGAACCGGCGACTCCATGCGTGGGCGTTCGCTCGATTACAGAACCGCGTCGAGGACAAATCGAAAGAGGCCGGTATCCCGG
TCGAATACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCCTGCGGCCACATCGGAAACAGAGCCGCGCAAGCCACGTTCCGGTGTACCAACGACGA
GTGTCACATCACGGAGTTTCAGGGCGATATAAACGGCGCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGC
AATGACTCGCCTCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCAAGCAGAGCCAACCACGGCAGATGACGCTTAGCGAGGTCGGGTCGGAAC
CCACTGCCGGTAGTTGACCGGTATTCCCATGTAGGGAAGCCGCGCCGTCATCGGGCTACGCCCGACTGCTTGAGGGATCTTCGATCCCTCTCCGTTCACG
GCGCGGAGGATGTCAC
AGTATTTAGTGGGACAAAAATGTACAAATTCTTGTGCGAACAGAGATAGATGTGGAGCGCGGTGGCGACCTGCATGAGCGGATCAAAGAGTACGCTCGTG
AGAATGGTATCCGCCATCCGCGTGCTTACCGTGAGCTCATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCCACGCTTGTCC
CGCCGACAGCACACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGGGAGGGGCTTCACGAGGCGTTCGACGCCAGGTGTGACACGATGAGCGC
AACCAGCGATGTGGTGACGCCTTACGACCTGCCGTATCAGGCGAAAGCGGCGCTGTGCAACTACGTCCCGCAACTTCACAACACCTACGACGCTCAAGAG
TTAGACGATGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGTGACTACGAGTTTACGTGGTGGGCACCACAACCCG
GTCGTGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAGGAGGATCTGTGGCACGACCTCGTAGATGGGAACGCTTCGGCAGGCCAACTCCG
CCTGCAACGGAACCGCACATCGTGGACGTTACACGTCACTGTCGAGTTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCACATC
GGTCTGGATATTGGTGAAACTGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTGCGAAGCATC
TCCGCAAAGAGATGCACACCACCCTGAAACGACTCCAAGAGCGAGACGCCGTCGAGTGGCGGATTGACGAGCGATTCAACCACTACCAGAACGCGCTTAC
CGATATTGTCGAGAAGGCGTCTCGGCAGGCCGTCGAGTACGCCCGGCAATTCGAGAAGCCGGTGCTGGTAATGGAGAACCTGACGTACATCCGCGAAGAA
TTGGACTACGGTTCGTACATGAACCGGCGACTCCATGCGTGGGCGTTCGCTCGATTACAGAACCGCGTCGAGGACAAATCGAAAGAGGCCGGTATCCCGG
TCGAATACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCCTGCGGCCACATCGGAAACAGAGCCGCGCAAGCCACGTTCCGGTGTACCAACGACGA
GTGTCACATCACGGAGTTTCAGGGCGATATAAACGGCGCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGC
AATGACTCGCCTCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCAAGCAGAGCCAACCACGGCAGATGACGCTTAGCGAGGTCGGGTCGGAAC
CCACTGCCGGTAGTTGACCGGTATTCCCATGTAGGGAAGCCGCGCCGTCATCGGGCTACGCCCGACTGCTTGAGGGATCTTCGATCCCTCTCCGTTCACG
GCGCGGAGGATGTCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1257 bp | 418 aa | 261 | 1517 | + | No |
AG : TnpB
ORF sequence :
METTTKTLEATLVPPTAHKERKLCDLLETYREGLHEAFDARCDTMSATSDVVTPYDLPYQAKAALCNYVPQLHNTYDAQELDDDHPVRLTNQAAEFDHSP
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEDLWHDLVDGNASAGQLRLQRNRTSWTLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRAKHLRKEMHTTLKRLQERDAVEWRIDERFNHYQNALTDIVEKASRQAVEYARQFEKPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKSKEAGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDECHITEFQGDINGAINVAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTKQS
QPRQMTLSEVGSEPTAGS
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEDLWHDLVDGNASAGQLRLQRNRTSWTLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRAKHLRKEMHTTLKRLQERDAVEWRIDERFNHYQNALTDIVEKASRQAVEYARQFEKPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKSKEAGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDECHITEFQGDINGAINVAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTKQS
QPRQMTLSEVGSEPTAGS
Blast result :
Comments
ISHmu4 is 88% aa similar to ISH12.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277