ISHmu4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001688 ND Halomicrobium mukohataei
Halomicrobium mukohataei DSM 12286
DNA section
IS Length : 1616 bp

Ends


Left end : CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCAGGCGTGAATCGCGTAAGCTCTGTGAGACAATCTTTGTGATTGTTGCCGACTGAATACGTAACATA II struct. : Yes
Right end : ACCGGTATTCCCATGTAGGGAAGCCGCGCCGTCATCGGGCTACGCCCGACTGCTTGAGGGATCTTCGATCCCTCTCCGTTCACGGCGCGGAGGATGTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GACGCCTCGGCGCGATCTCGGTGCCGTCtcac

DNA sequence

CTTGATTCAGCGAGAGAATCCCGCCGTTCACGGCAGGCGTGAATCGCGTAAGCTCTGTGAGACAATCTTTGTGATTGTTGCCGACTGAATACGTAACATA
AGTATTTAGTGGGACAAAAATGTACAAATTCTTGTGCGAACAGAGATAGATGTGGAGCGCGGTGGCGACCTGCATGAGCGGATCAAAGAGTACGCTCGTG
AGAATGGTATCCGCCATCCGCGTGCTTACCGTGAGCTCATCGAACAAGGGTTAGAGACGGATGGAAACGACGACTAAGACGCTCGAAGCCACGCTTGTCC
CGCCGACAGCACACAAAGAGCGGAAACTGTGTGACCTGCTCGAAACCTACCGGGAGGGGCTTCACGAGGCGTTCGACGCCAGGTGTGACACGATGAGCGC
AACCAGCGATGTGGTGACGCCTTACGACCTGCCGTATCAGGCGAAAGCGGCGCTGTGCAACTACGTCCCGCAACTTCACAACACCTACGACGCTCAAGAG
TTAGACGATGACCACCCGGTTCGGCTCACCAACCAAGCCGCCGAGTTTGACCACTCTCCGGCGCGTGACTACGAGTTTACGTGGTGGGCACCACAACCCG
GTCGTGGGACGAATTTCTGGATACCGCTTCGTATCAATCCCGAACAGGAGGATCTGTGGCACGACCTCGTAGATGGGAACGCTTCGGCAGGCCAACTCCG
CCTGCAACGGAACCGCACATCGTGGACGTTACACGTCACTGTCGAGTTTCCGGTCGAAGAACCCGACTACGCGACGGACGGCGACGACGTGACGCACATC
GGTCTGGATATTGGTGAAACTGCCCTGATAACGGGCTGTGCCCTCAAGGACGGTTCACCAACTGGCCCGTTCGTGTGTGACGGGAGCCGTGCGAAGCATC
TCCGCAAAGAGATGCACACCACCCTGAAACGACTCCAAGAGCGAGACGCCGTCGAGTGGCGGATTGACGAGCGATTCAACCACTACCAGAACGCGCTTAC
CGATATTGTCGAGAAGGCGTCTCGGCAGGCCGTCGAGTACGCCCGGCAATTCGAGAAGCCGGTGCTGGTAATGGAGAACCTGACGTACATCCGCGAAGAA
TTGGACTACGGTTCGTACATGAACCGGCGACTCCATGCGTGGGCGTTCGCTCGATTACAGAACCGCGTCGAGGACAAATCGAAAGAGGCCGGTATCCCGG
TCGAATACGTCCGACCGGAGTACACCAGCCAGACGTGCCACGCCTGCGGCCACATCGGAAACAGAGCCGCGCAAGCCACGTTCCGGTGTACCAACGACGA
GTGTCACATCACGGAGTTTCAGGGCGATATAAACGGCGCAATCAACGTTGCACAACGGGCTGACCCGTGGGGAGAGAGCGTGCCGCTGAAACCGGCAGGC
AATGACTCGCCTCGGGATGGGAGTGCCTGTGACAGCACCACGACCCACACCAAGCAGAGCCAACCACGGCAGATGACGCTTAGCGAGGTCGGGTCGGAAC
CCACTGCCGGTAGTTGACCGGTATTCCCATGTAGGGAAGCCGCGCCGTCATCGGGCTACGCCCGACTGCTTGAGGGATCTTCGATCCCTCTCCGTTCACG
GCGCGGAGGATGTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1257 bp418 aa2611517+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

METTTKTLEATLVPPTAHKERKLCDLLETYREGLHEAFDARCDTMSATSDVVTPYDLPYQAKAALCNYVPQLHNTYDAQELDDDHPVRLTNQAAEFDHSP
ARDYEFTWWAPQPGRGTNFWIPLRINPEQEDLWHDLVDGNASAGQLRLQRNRTSWTLHVTVEFPVEEPDYATDGDDVTHIGLDIGETALITGCALKDGSP
TGPFVCDGSRAKHLRKEMHTTLKRLQERDAVEWRIDERFNHYQNALTDIVEKASRQAVEYARQFEKPVLVMENLTYIREELDYGSYMNRRLHAWAFARLQ
NRVEDKSKEAGIPVEYVRPEYTSQTCHACGHIGNRAAQATFRCTNDECHITEFQGDINGAINVAQRADPWGESVPLKPAGNDSPRDGSACDSTTTHTKQS
QPRQMTLSEVGSEPTAGS

 

Blast result :
Comments
ISHmu4 is 88% aa similar to ISH12.
References
1] Pfeiffer, F. (2013) Direct submission
2] Tindall,B.J., Schneider,S., Lapidus,A., Copeland,A., Glavina Del Rio,T., Nolan,M., Lucas,S., Chen,F., Tice,H., Cheng,J.F., Saunders,E., Bruce,D., Goodwin,L., Pitluck,S., Mikhailova,N., Pati,A., Ivanova,N., Mavrommatis,K., Chen,A., Palaniappan,K., Chain,P., Land,M., Hauser,L., Chang,Y.J., Jeffries,C.D., Brettin,T., Han,C., Rohde,M., Goker,M., Bristow,J., Eisen,J.A., Markowitz,V., Hugenholtz,P., Klenk,H.P., Kyrpides,N.C. and Detter,J.C. (2009) Stand Genomic Sci 1 (3), 270-277